LOC110526317 (LOC100196237)


Basic Information

Item Value
gene id LOC110526317
gene name LOC100196237
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 63219436 ~ 63224162 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052191.1
GTCAGAGCCCCCTGCCCCTTCTGCTTCTCCAGACAGATGGACAGCCGGCCAGTTCACCTTTCAGGGAAGAGGAGTTCATTATAGTTTGCTTGTGCCATCGCTTGTCTCTGCAGCACAGTGCTATGATACAGGGACGTGATAGAATGTGGAAACGGTCATAGCTGGTATTAACTGCTAATCACTAACCTTGTGCTGAACTGCACACGAATGTCTTTTGAATGCTCTGAGTGATTTATAATATGCTGAAACAGATCTACTTGCTGTCAAACTAGTATGTTACTGGATGTGGCAGGGAAGCCATGTTCTTCATAGTGAAGTGAATGCAATTTGAGGTTAATTATATTATTAGCTCTTGCTTTTTGCTCATTCTTACCCCAGCGGTGTTGACTTTCTCAGCAATGCACTACTTCAATGATTATTCCTCCTCCAATCACATACTAACATACAAAACATTGTTTTTCTCATGTATCTATACAACTTTAACAGTTCAACATGCAGGCAGGGTAGAGCGATCatgatgtgtgtgtatttttcaGATTGATGAGCTGTCTATTAAACCTTCTGATCGATCCCAGGTGTCTGGCCCCGGGCCTTCATCCCAGATCTACGATAACAACGCCCTCCCTGAGCTGCCCTCAGTTCCCGACACGCTTCCCACTTCCTCCTTTGGAGTTGGACGAAACACTGCGAGCTCTGATGACATCGACTTTGATGACCTGTCACGGCGCTTTGAGGATCTGAAGAAGAAGACCTAATCCTCCAGTATCCCATCATGCTGTGTTGTCAGTCACCGCAGTTACAGGAAATGTTTAAATATTTGGATTGGCACCCTTTGCAGTGAAACTCTCCTCACTGTGTAGTTTTACTGATGTTAACATGAACTGTACCTCATTTAAACACACGTGTCTGTCTGGCATACTGAAGGTGAAGGCCCTTTAGAGGGCTATTTGACAGTACATTTTGCAGTACACTTTATTATCGACTACGTCCAATCAACTGGACCATATAGGTGTCATCTTTATATGAGCACTTTGGATATGAAATGGCCTTCCTGATAGTAACTAGTACTCTATGTAACCTCTCAATCTTTCTCGTTGTTATGGTTGTCCCCTATCCCCTTGACTCACAGTATGAGACAATAtttggttaataatcaaatagtCTTAACTAGTAGGGTCTCTCGTCCAGAGACTGGATTGAGTAATCCAGAATGTCAATAGTGTGTCGTTGGTGGGTTTCATGAACCTGTTTTTTTACCTGCCACTGAATCGCCTACTAGAACAACCTGTTTTCTGGCACACCCATTATGTCGAAATATTCAGGCCTAGGACATTTTCAAGACCGGGTGCTACGGCCTGTCGGGTTTTACCCTCGTTACTCTCTGGGTCTGGACCTTTGGGGACATCTGAAACCGGTTCTTTGACATATCTGTTACCTTACATGGGGTGAAGGGATTTAATTAGACTTGATTGATAAAGTGGGGTATTGCGATATGAAATACACAATGCTATTTACAGGAAGGATTGTTTTAATTGTACAGCAAACGAATGTTGGTAGGAGGTTGAAGGCAAGAGTtggaaaatatttttattttgtacatttgTTCTAATAATATTCACTTGATGTTTTAAAGATGATTTAGTTTAACCCTATACATGCACTTTCCATGTTTGTGTAAAATAACCCATGCAGTGTATTGGTGACTGGAATGCATGATTTCACTGGTGACAGAAATTATACTCTATGACAAACCACTTGACCATGTAAGTTTGATGTAAATACGTTCCTCAAATGTAATGGGTTCTTCTTCCTCTTTGTGTAATAGAGGTTTATAGTGTGATTCAGTATGTTATCTATGTATGTGCGTCACACTGCATTTACCATCATCCAAGACCTTCCCATTCTGTAAGTATATTCAGACTATGTACACGTAACATGCTGTGGTGGAAAAAcgacccaattgtcatacttgaataaaagtaaagatgccttaatagaaaatgactcaagtgaaagtcacccagtaaaatactacttgattaaaagtcaaagtatttggttttaaaataCTTAAGTATTGAAAGTATAAATAATTAAAAATTCCTTATTTTAAGCAACCAGAAAACACAATTCTTGTGTTTTTAAATTTTgcggatagccagggacacactcccaACACAGACATAATacacaaactaagcatttgtgtttagtaagcccaccagatcagaggcgatagagatgaccagggatgttattttgatagtgtgaattggaccaattttctgtcctgttaagcattcaaaatgtaacgagtacttttgggtgtcggggaaaatgtacaatattttttttgggggaaagtagtgaagtaaaagttgtcaaaattataaatagtaaagtacagatactccagaaaatgacttaagtagtactgtaaagtatttttacctaagtactttacaccacttgtAACATGCCTATTTCTTAATTTATATAATCTTTGTTAAAATTAGTtttaagtttttttattttatgaacATTGAATCTTGGTGATGGAAGTAGTTTTGATAAAGGAGAGAAACGGGGCTGGATTTGCTGTTCCAGTCTTATAGCTTGTTTTCACTCATTTACTATGGATGGAAGTTAGGACTGTCTACTCCACCATCCTAAAATAAGACTTTAACACTACCGTACAGTGACCCGCTCACTGCTTTGACTGCTCATCCTCTTAGGTGTAATATAGGATTGTTTGAAGAGTGTTTGATACTAACTTTGATTAGCAAGTGTACTGTATATCTTGTCACAAAACAGATATTAGCCTATGTTTCTTATGTCTAATAAAGGACATATTTCTAATTGAAGTTCTGGGGTGGCTAATTTTCTTAGATGTAATTGTTTCTGTGTCATATCTTTTCAAGTGAATAAGTGCTACTGTAATCAAGGAAGTCGGTTGGTAGTGCAGTGTAGCTACTAGTGCTGCCACTAGAGAGGGTAGATTACCAGTGTtagttgtttgcagtaactttgttgttgtaatatcgccAACAGACATGgctgtttcaccattaaggattccgGCTTTAAGACTGAAATATAGAGATGTTGATATGAATGTGATGTTTTTATACATATTCGTTTTTTTCTTTAGATGCCCGGCCTCATAGGGTTCAACTGTTGGCACATATGATGCCTTTAACAACTTCCAGCCTCCAATGAGAGGAGGACACCCCCCTGAGCTGCCCAGCTGCCCCCTCCCTACGAGTCTATTGATGAGCTGTCTATTAAACCTTCTGATCGATCCCAGGTGTCTGGCCCCGGGCCTTCATCCCAGATCTACGATAACAACGCCCTCCCTGAGCTGCCCTCAGTTCCCGACACGCTTCCCACTTCCTCCTTTGGAGTTGGACGAAACACTGCGAGCTCTGATGACATCGACTTTGATGACCTGTCACGGTGCTTTGAGGATCTGAAGAAGAAGACCTAATCCTCCAGTATCCCATCATGCTGTGTTGTCAGTCACCGCAGTTACAGGAAATGTTTAAATATTTGGATTGGCACCCTTTGCAGTAAAACTCTCCTCACTGTGTAGTTTTACTGATGTAAACATGGACTGTACTTCATTCAAACACACGTGTCTGTTTGGCATACTGAAGGTGAAGGCCCTTTAGAGGGCTATTTGACAGTACATTTTGCAGTACACTTTATTATCGACTACGTCCAATCAACTGGACCATATAGGTGTCATCTATATATGAGCACTTTGGATATAAAATGGCCTTCCTGATAGTAACTAGTACTCTATGTAACCTCTCAATCTTTCTCGTTGTTATGGTTGTCCCCTATCCCCTTGACTCACAGTATGAGACAATAtttggttaataatcaaatagtCTTAACCAATAGTGTCTCTCGT

Function

NR:

description
IST1 homolog isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052191.1 True 3916 mRNA 0.40 4 63219436 63224162

Neighbor

gene id symbol gene type direction distance location
dhodh dhodh coding downstream 21308 63189073 ~ 63198128 (-)
LOC118964918 LOC106598822 coding downstream 75799 63140848 ~ 63143637 (-)
LOC118964916 LOC106581595 coding downstream 129559 63087062 ~ 63089877 (-)
LOC118964917 NA coding downstream 134462 63082219 ~ 63084974 (-)
LOC118936659 LOC106581595 coding downstream 183694 63032929 ~ 63035742 (-)
LOC110526314 LOC100196237 coding upstream 411 63224573 ~ 63235283 (-)
LOC110526941 LOC106562155 coding upstream 11794 63235956 ~ 63240653 (-)
LOC110526320 dhso coding upstream 101652 63325814 ~ 63330232 (-)
terb2 terb2 coding upstream 110754 63334916 ~ 63337941 (-)
cilp LOC106587239 coding upstream 540498 63764660 ~ 63773065 (-)
G532899 LOC106562187 non-coding downstream 43451 63173939 ~ 63175985 (-)
G532871 NA non-coding downstream 79097 63080820 ~ 63140339 (-)
G532886 NA non-coding downstream 209989 63009166 ~ 63009447 (-)
G532875 NA non-coding downstream 221106 62997707 ~ 62998330 (-)
LOC110526310 LOC106587159 non-coding downstream 229158 62985486 ~ 62991995 (-)
G532870 NA non-coding upstream 20708 63244870 ~ 63245226 (-)
G532866 NA non-coding upstream 21334 63245496 ~ 63246627 (-)
G532923 NA non-coding upstream 24140 63248302 ~ 63249004 (-)
G532924 NA non-coding upstream 24997 63249159 ~ 63249467 (-)
G532970 NA non-coding upstream 79924 63304086 ~ 63304969 (-)
G532766 NA other downstream 364429 62822905 ~ 62855007 (-)
G532763 NA other downstream 366619 62851696 ~ 62852817 (-)
LOC110526302 LOC106562167 other downstream 661037 62500665 ~ 62566214 (-)
znf536 LOC106562015 other downstream 3522473 59507092 ~ 59698393 (-)
igdcc3 LOC106562146 other upstream 599737 63823887 ~ 63944930 (-)
G534201 NA other upstream 1274291 64498453 ~ 64499614 (-)
G534349 NA other upstream 1354636 64578798 ~ 64614796 (-)
G534603 NA other upstream 1631333 64855495 ~ 64895099 (-)
LOC110526365 LOC106587205 other upstream 2399827 65600097 ~ 65765382 (-)

Expression


Co-expression Network