LOC110526331 (LOC106587235)


Basic Information

Item Value
gene id LOC110526331
gene name LOC106587235
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64026685 ~ 64032292 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607204.2
TTCAGAACCGTGGAGAGCAGCCGCCATGGAATGAGGGAGAGCCAGATAGCGATTGGATAATCATATTAAGACGCAGATATCGCGAGTAGAGAGCAGTGTGCCTATTGGTCAGGACTGACGGGACAGCAGATTTACTGACAATGATAGGACAGCTACGGCATTGGAGATACATTACTTCCACGACCTCGTATAAAAAGTGAAATAACAGTGATTTATTCTACTTTATCTCTTCATTATCAAGCTTTGTCATTCCTCACATTCGATGAGGTGGAACTGATAGCATGCAGCCGAGGGACAGGACATTGTAAATAGCAACAGTGCGCTCAGGACAGGAGGTTCAAAAGATTGAGGACCAAAACAATCTGAACAACAAAACCAACAGTCATGGCTGAGAATAACTTTCCTCCAATACCGGGGTTCATCCCCCTGCAGCCGTGTTTCTACCAGGACTTTGATGAGGAGATCCCTGAACAGCATCGCACCATGTGCAAGAGACTCTACCACCTGTGGATCTTGCATGCAATCACCCTGGCTGTGAATCTGGTGGGCTGCTTTGTGTGGATGCTGGGTGGAGGGGGCGTGACAAATTTTGGCATGGCCATCATATGGTTGATTCTCTTCACCCCCTGCTCCTATGTGTGTTGGTTCAGGCCCATCTACAAGGCCTTCAAGACTGACAGCTCGTTCAACTTCATGGCGTTCTTCTTTGTGTTCATGGCCCAGGTGGGCATCAGTATTATCCAGTGCATAGGGATCCCAGGCTGGGGAAACTGCGGCTGGCTGGCCACCATCTCTTTCTTCAGCTACAACCTTTGGATCGCCTTGCTGATGCTCATCCCCACCCTCTTTTTCACTGCCACGGCAACGCTGTCCTTCATCGCCCTCACCAAGgtCCATAACTTCTACCGTGGCAGCGGGGGAAGCATAGGCAAGGCTCAGGAGGAGTGGACTACAGGGGCCTGGAAGAACCCCCACGTCCAGCAGGCAGCGCAGCAGGCAGCTATGGGAGCCGCCACGGGGGCCATGATGCCGGATCAGCAGTACTCCAGCAACACCCCACAGTACAATGACAACCAGATGTAG
>XM_021607205.2
CAGAACCGTGGAGAGCAGCCGCCATGGAATGAGGGAGAGCCAGATAGCGATTGGATAATCATATTAAGACGCAGATATCGCGAGTAGAGAGCAGTGTGCCTATTGGTCAGGACTGACGGGACAGCAGATTTACTGACAATGATAGGACAGCTACGGCATTGGAGATACATTACTTCCACGACCTCGTATAAAAAGTGAAATAACAGTGATTTATTCTACTTTATCTCTTCATTATCAAGCTTTGTCATTCCTCACATTCGATGAGGTGGAACTGATAGCATGCAGCCGAGGGACAGGACATTGTAAATAGCAACAGTGCGCTCAGGACAGGAGGTTCAAAAGATTGAGGACCAAAACAATCTGAACAACAAAACCAACAGTCATGGCTGCAGAGAATAACTTTCCTCCAATACCGGGGTTCATCCCCCTGCAGCCGTGTTTCTACCAGGACTTTGATGAGGAGATCCCTGAACAGCATCGCACCATGTGCAAGAGACTCTACCACCTGTGGATCTaaattcactgaggaggatggtccccCGCtatctcctctgaggagccttcaCACTAGTGTGTCTCTCATCCAGGCCGGTGGGAGATTATGCATACGCTGCCCCTTCTCATCTATTGACTTATATTTTCTTCTCTctgcagaccccccccccccccccatttagaCAGGTATTCTGAACCACTTATACACCAATAACAGTGTTGATGGAGTAATCTGTTAAATCCTTTCTGTCATTCCTTTTGTATGTTGTGCTTGATCTGCATGTTTGATGTTTCTATGAGTTTATGTTTCCATGATTTCagtcattctaaaatgtatttgaatCCATTTAACTAATCTCATTGAATAGTCACCCTTGTTACATTAGATGTATTGGTCAAGAATAGACAGAATTGTACAGAAAACTCAAAAGTAACCAATTAAAATACTTCTAGCCTTCACTTCGTTTCTTTGCCTGAGATGAAAAAAGACTAATCACTTAATGGGTCTATTATTATAGCTCTGGTTGGGTTTGTAGTTCGGATGAAGGGATATCTTTTCCCTTTGTGAACCAGTAATTGAAGCTGATTGGCTGCCTGTGGCAGTTCTGTGGAGCAGGCTGGAACTGAACCCCTAGCTCACGCAGCGCTTTAATTACAACCAATTCGATCTTAAGAGAAGTAGGTTTGCTAGATTACTGAGActtagagcaaaacagagaagggggaaaaaaatatggaCACCTGCAGAAAGGGCACTCAAGGAACCGGAGTGGACAGAAAGTGCACATTTATCTGAGAGCTGGTTCCCTGACTGGTGTTATTATTATACTTTTGCTTTGTTCTACTGGTGTGTATAACAGTGTGTTCTCCTGGTGATGTGTTTTACAGTGCATGCAATCACCCTGGCTGTGAATCTGGTGGGCTGCTTTGTGTGGATGCTGGGTGGAGGGGGCGTGACAAATTTTGGCATGGCCATCATATGGTTGATTCTCTTCACCCCCTGCTCCTATGTGTGTTGGTTCAGGCCCATCTACAAGGCCTTCAAGACTGACAGCTCGTTCAACTTCATGGCGTTCTTCTTTGTGTTCATGGCCCAGGTGGGCATCAGTATTATCCAGTGCATAGGGATCCCAGGCTGGGGAAACTGCGGCTGGCTGGCCACCATCTCTTTCTTCAGCTACAACCTTTGGATCGCCTTGCTGATGCTCATCCCCACCCTCTTTTTCACTGCCACGGCAACGCTGTCCTTCATCGCCCTCACCAAGgtCCATAACTTCTACCGTGGCAGCGGGGGAAGCATAGGCAAGGCTCAGGAGGAGTGGACTACAGGGGCCTGGAAGAACCCCCACGTCCAGCAGGCAGCGCAGCAGGCAGCTATGGGAGCCGCCACGGGGGCCATGATGCCGGATCAGCAGTACTCCAGCAACACCCCACAGTACAATGACAACCAGATGTAGGGGATAaagtggagggagggaagcaTGTCAAAGCATGAGCAGGAGTTTGTTATCTGTTTATCCCATCCCCCAAAAATGTGTCTTCATCACAGCAGCTCTTTCAATAGGCAATGGGTCTTCAACCCTTTCTTTGCCCAGGGACCCTctcccaggcaaaccggcaaCCTAGCCATTATTTTCTTCTCACATGTCTTGTCTTAGCATCAAGTGAATGATATGTTTGCAAAAATTTATGTCCAAGTCAAGAAAGTTTACCAGCAGCCAGCGGCACTTGACGCACTGGTAGCCTACAGTATGCCAGATACTTCAGTGTCAGCTGGTAATTGGCTCCAGTGAGTGTAATTAGCTCAATATTTGGAGTTAATAAATAATGTTGACATCATTAGAAAGAAGACATTCTCCTATTTCTACTGTAATAATTTATTCTGTTGTTGCTAGCGATATAACCCTGCTATAGGTcactatactacactatcacACTATACCAACTGACTCTGAACACCCATAACGTATAGACATTTCATGTTCCCAGCAACAACACTGAATTACAGTATctggtttctactgtgtgatGTCATATTCCTGCTTCTGCTGCTTTGTTTTGACGTGTCACATCAAAGATGCGTCCCTATCTTATATCACTGTGTTAGCAGGGCCCTGTGGCCACATGCACACAGCACCAACTCTGCTTGTCAGAGCTCATTTTGATCACCCACTATCCTCTCCTCAATGctcttcggggggggggggggggggggg
>XM_021607203.2
ACCGTGGAGAGCAGCCGCCATGGAATGAGGGAGAGCCAGATAGCGATTGGATAATCATATTAAGACGCAGATATCGCGAGTAGAGAGCAGTGTGCCTATTGGTCAGGACTGACGGGACAGCAGATTTACTGACAATGATAGGACAGCTACGGCATTGGAGATACATTACTTCCACGACCTCGTATAAAAAGTGAAATAACAGTGATTTATTCTACTTTATCTCTTCATTATCAAGCTTTGTCATTCCTCACATTCGATGAGGTGGAACTGATAGCATGCAGCCGAGGGACAGGACATTGTAAATAGCAACAGTGCGCTCAGGACAGGAGGTTCAAAAGATTGAGGACCAAAACAATCTGAACAACAAAACCAACAGTCATGGCTGCAGAGAATAACTTTCCTCCAATACCGGGGTTCATCCCCCTGCAGCCGTGTTTCTACCAGGACTTTGATGAGGAGATCCCTGAACAGCATCGCACCATGTGCAAGAGACTCTACCACCTGTGGATCTTGCATGCAATCACCCTGGCTGTGAATCTGGTGGGCTGCTTTGTGTGGATGCTGGGTGGAGGGGGCGTGACAAATTTTGGCATGGCCATCATATGGTTGATTCTCTTCACCCCCTGCTCCTATGTGTGTTGGTTCAGGCCCATCTACAAGGCCTTCAAGACTGACAGCTCGTTCAACTTCATGGCGTTCTTCTTTGTGTTCATGGCCCAGGTGGGCATCAGTATTATCCAGTGCATAGGGATCCCAGGCTGGGGAAACTGCGGCTGGCTGGCCACCATCTCTTTCTTCAGCTACAACCTTTGGATCGCCTTGCTGATGCTCATCCCCACCCTCTTTTTCACTGCCACGGCAACGCTGTCCTTCATCGCCCTCACCAAGgtCCATAACTTCTACCGTGGCAGCGGGGGAAGCATAGGCAAGGCTCAGGAGGAGTGGACTACAGGGGCCTGGAAGAACCCCCACGTCCAGCAGGCAGCGCAGCAGGCAGCTATGGGAGCCGCCACGGGGGCCATGATGCCGGATCAGCAGTACTCCAGCAACACCCCACAGTACAATGACAACCAGATGTAGGGGATAaagtggagggagggaagcaTGTCAAAGCATGAGCAGGAGTTTGTTATCTGTTTATCCCATCCCCCAAAAATGTGTCTTCATCACAGCAGCTCTTTCAATAGGCAATGGGTCTTCAACCCTTTCTTTGCCCAGGGACCCTctcccaggcaaaccggcaaCCTAGCCATTATTTTCTTCTCACATGTCTTGTCTTAGCATCAAGTGAATGATATGTTTGCAAAAATTTATGTCCAAGTCAAGAAAGTTTACCAGCAGCCAGCGGCACTTGACGCACTGGTAGCCTACAGTATGCCAGATACTTCAGTGTCAGCTGGTAATTGGCTCCAGTGAGTGTAATTAGCTCAATATTTGGAGTTAATAAATAATGTTGACATCATTAGAAAGAAGACATTCTCCTATTTCTACTGTAATAATTTATTCTGTTGTTGCTAGCGATATAACCCTGCTATAGGTcactatactacactatcacACTATACCAACTGACTCTGAACACCCATAACGTATAGACATTTCATGTTCCCAGCAACAACACTGAATTACAGTATctggtttctactgtgtgatGTCATATTCCTGCTTCTGCTGCTTTGTTTTGACGTGTCACATCAAAGATGCGTCCCTATCTTATATCACTGTGTTAGCAGGGCCCTGTGGCCACATGCACACAGCACCAACTCTGCTTGTCAGAGCTCATTTTGATCACCCACTATCCTCTCCTCAATGctcttcggggggggggggggggggggg

Function

NR:

description
secretory carrier-associated membrane protein 5-like

GO:

id name namespace
GO:0015031 protein transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K19995 SCAMP; secretory carrier-associated membrane protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607204.2 False 1083 mRNA 0.51 7 64026685 64031533
XM_021607205.2 False 2711 mRNA 0.46 7 64026687 64032292
XM_021607203.2 True 1839 mRNA 0.49 7 64026691 64032292

Neighbor

gene id symbol gene type direction distance location
LOC110526326 eif3j coding upstream 263798 63758243 ~ 63762887 (+)
strc1 LOC106587240 coding upstream 269447 63730434 ~ 63757238 (+)
LOC110526325 ctdspl2 coding upstream 298855 63702297 ~ 63727830 (+)
golm2 casc4 coding upstream 327570 63684063 ~ 63699115 (+)
LOC110526321 LOC106562150 coding upstream 351488 63528470 ~ 63675197 (+)
insyn1 LOC106587233 coding downstream 185882 64218174 ~ 64277755 (+)
LOC110526337 LOC106587231 coding downstream 462527 64494819 ~ 64499621 (+)
LOC110526343 LOC106587228 coding downstream 720737 64753029 ~ 64765798 (+)
LOC110526344 LOC106587225 coding downstream 736807 64769099 ~ 64781704 (+)
chrna5 LOC106587222 coding downstream 800332 64832624 ~ 64851098 (+)
G533410 NA non-coding upstream 24889 63938389 ~ 64001796 (+)
G533360 NA non-coding upstream 198956 63826855 ~ 63827729 (+)
G533359 NA non-coding upstream 201759 63823929 ~ 63824926 (+)
G533351 NA non-coding upstream 213776 63812702 ~ 63812909 (+)
G533339 NA non-coding upstream 225861 63795729 ~ 63800824 (+)
G533584 NA non-coding downstream 13943 64046235 ~ 64046477 (+)
G533586 NA non-coding downstream 16159 64048451 ~ 64048682 (+)
G533668 NA non-coding downstream 81072 64113364 ~ 64113821 (+)
G533697 NA non-coding downstream 113329 64145621 ~ 64145854 (+)
G533701 NA non-coding downstream 115295 64147587 ~ 64147826 (+)
G532489 NA other upstream 682930 63308533 ~ 63343755 (+)
LOC100750227 LOC106587244 other upstream 687187 63338236 ~ 63549030 (+)
G532237 LOC106591742 other upstream 827951 63032931 ~ 63198734 (+)
LOC110526311 LOC106587159 other upstream 1011699 63005672 ~ 63068991 (+)
G532259 NA other upstream 1204069 62820420 ~ 62822616 (+)
G534453 NA other downstream 758030 64790322 ~ 64847104 (+)
G534653 NA other downstream 1080988 65113280 ~ 65169563 (+)
LOC110526356 LOC106587213 other downstream 1124217 65065380 ~ 65178884 (+)
G535150 LOC106587155 other downstream 1815331 65847623 ~ 65849441 (+)

Expression


Co-expression Network