insyn1 (LOC106587233)


Basic Information

Item Value
gene id insyn1
gene name LOC106587233
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64218174 ~ 64277755 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607209.2
ggggagaggggatccAGGCAGAGGACACTGTAGCTACGTAGCTAGTGCTGTGTCTTTAAAACGCCAGGCCCCTCCTCCCACCACACAGTCAGAGCGGAGCAGCAAAGCAAGTTGTGCTGGCAATAGCCTGAGCCCCACGATAAACCCTGGCATCAGCCTGCCTTCATCCGGCAGTCAGCGAGGACACTTCAGGGCGCAGGGGCAGAGAGACgggacggagagagagtgagacagaaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagtgtcgtTAGGAGCAGGGCTCTGACTGATACAGATCCTCTCCACAGCTCTGTACGCAGTAGCTCTTTCTGCTGTTTCCCGACGCCGGCAGGGTTGATGAGGATGGcgggtggcttcttcctttccaCAGCATCGTCACTAGAGCAACGGTAGCATCAGCATCTACAGCAGCAACAGTTTCAGCCTCAGCATcatcagtagcagcagcagccggATCTATACTCTGCTGCTGGTCCCTATTCTTCAGCCGCCTCCTCTCTCTGGTGTCTAAGAGTGCTGCTGTCAGGGCCGTTCAGCCCACCTCCTCTTCCGactcctcctgcctcctcctcaagcctgcctcctcctccatcccGCCTCTTCCTCCACATCTCCATCCTCCACatgctctccctccttccttccgcTGAGACACGGCACTGAATGAATTCTTCACCCTCTGACTGGAGCTGCTTTCTCTGGGAAGACATGCTGCTGAGTctagagaggagaaaagagagagggaacgagacagaaaaagagagagaggaagaaaaaaacaactgctttcctttctgtctctccaggTGTCATGTGTGATTGGCCAGCTTGCCCTCTGGCAGTAGCATCAGCCTGGATTCAGTGTGTGTCTCACCCCCCTGCCTGTGCCTGGGCTCCGGCTGTCCCTGGGGACGCGCTACTGGGATTTACCTCTTACTGCTGGATGGAGATGGCGCAGGGCTTTCTGCCTTTTTGAAAACTGTTCACAGAAGGAGAAATACACAGATAAACAGAATAAGGAAATATAATGAATCaatcagcagcacaaccaggcAGACTACTGGATTCCCTTAGCAACAACTCAGGGAGAATAAGAGAGAAGTGAATTGTCTCTTCCTATCTTCTCTGGTGTCTGGTTTCTGGGCGCAACCCTGCAGACCAGAGTGGACCAACAGTCGGATCTGAAAGAGCAGGACAAGGGGCACTGCAAGGGCACGAAGGACACGCAAGTCACCCTAACACCAGGGGAAGgaccctcctcttccacctcctcctgttcATCACCATGTTGGTTTGTCATTCTTCCCCTGCACATTCTATTAATTAGTCACATTTTACTCGCTAAGACATCCGTTTATACTCATTCCTGCCAACTGGAATAAGCCCTGCCACTGAAGAAAATATTGGAcattcttcacacacacacaaacaagcacagagagactctcaccctcctcctaccttccttcctcctctctttgaCGAGAAATGAACAACACATGTCGGTCATCATCTGAGCATGAAATGGATGTGTGCAGAAGTTGCTTTTGATGTGGGCTATTTCTTTATTCCTTCAAGATTAGTTTATTCTCCTGTCACTTCTGAGAGAAAAGGAACACTGCACAGCAGAGGACACAGGAGGAATATCTCTTGTTTTCAAAAGGatttgtcctcctctctccctaaaAAAGACAGAAGCCAAACTGAGGGAGTATATGTAGAAGGCGAAGCTTGTCCCTACTGCCTACCAATAATGTAGACCAAGATCATTATCAAAAAAATAGCAACTGCTGGGAGTTCTACTTTTCTGTTACGCTTGGATATTCTGATCTACAGGGGAGGTTGAACATGTACCCCTTGTTCAGCTTGACAACCTGGGATGCACTCTTTTACAGTAACCTGGCTGACACCAAGTCACTGCATCGTACCCGCTAAATAAGATTGTAAAGGGAggtgagtgggaggggaaaagAGCAACTTCCTCATACAGACGATCTAAATAAATATCCTCCTCAGAGACCGATGCAAACGTATACACTGACACATGAGATGAGTAGGCTCTCTGGCTCAACACTATTATATAAGGTGTTTTCACACACACCATCTTAGCTCCTGTTCTTCTCTTTTTCCTCCTGTTCCGTGGATTTAACTTGAGTTTTTTCATGTTTCTTTTGGCTTCATTTTTGGTACGATCCATCCTGGAGTCATGGATGGAGGAGGGTAACGCAAGGGGGTTGAGCGCTCAGGCCAGGCAAGGTCTTTTGGCTGTCCAGGGGATTTTAAGATGTTGAGGTCTCCCTGCGTGGCCGGGGCCCCTGTTCGGATCAGTAGCACTGAGGCTCCTTGCGGCCAGAGACATGGACCCCGACTCGGCTCCCCCCCGCCCCTGCCCTCAGCCTCAGCCTGCCAGCCCCTGGCCCCAAGTCGCCCTGTGAAGGATGTCCCTCAGCAGAGCTCCGGCCCGGGACACCTCTGAGACCCCCAGCCAGACCCCCAGAGAACGGATCCGCAGCCACATGAAGATGGTGATCAACCAGCTGGACGGCATTCTCAAAGAGCTCAAGGATGTGGCCAAGGAACTCCGGGAGGTGGTGGGTCAGATCGACAAGCTGACGTCAGACTTTGACTTTGACCTGGAGCTGGATGACTGGACAGTGGCCACAGCGAGCAGCACGTCCAGCAGCGAGAGGGGCCTGGGAGAGGCCTTCAGGCTGGACTTCCTCAATCCTGACGTGCTCTCAGACAGCTGGGAGTTCTGCAGCTATCTGGAGGCCTCCGTCGCTGCAGCAAACGCCGCCCACAAAGCAGCGCCAACAGAGCAGCCCACGGATGCAGGGCTGGAGCCGGGGGCGGGGCGTGGGTGCATCCctacccagacccagaccccAACCCCACCCCCCACAACCGCCTCAGCCTACTCCCAAATGAATGGGGGGCTGCCAATCCCTAACGGACCTCTCATAGTCACCCCAGACTCGTCCAGTGCCAGCGAAGAGGCTTCCAGCTCCACACACAGCCACAAGACCTCTCGCACGTCCGGCACCAGAGAGAGAGTCCGCTTCAGTGACAAGATCCTATACCACGCCCTGTGCTGTGATGATGacgaggaggatgaagaggagggagatgaggagaaggGCGGCTGTGCGACCCCAGACACTGACGACAGTGAGCCCAGTCCTAGTCAAGCCGGCTCGCCCACACCACCGCTCTCCTCCTCAGAGCACTCCGTCCTCCATAACTGTCTGGACCCTTCTTATGTCTCGTTCCCAGTGAACGTGGCAGCGGGGACTCACACGCTGCCCAGAAAGGGTCTTCTCAATCTCGCAAGCTGCCGGAAAAAACTGCTACGGAACAGCAGCACACAGACTGTTTCAGATAAAAGCACCCAAACAGTACTGCCCTATATTCCAGCCAAACAGAAAACAAAGGACCACTGAGAAACAGTAACTTTACAACAACAGAACTAATGAAAAAGGACTGTGTACTATTTAATATTAAATACATAGATCATAGATTaatacacaaataaataaataaatacatattaatTACTAAATAAATACATGATATGGGAAATTACTCGACTACCTAAAGTCATTTTGAGGCTCAGGGAAATAAAGGATAAAGGCAGTTCCTTATGGCAGAGAGAAAAGGGATATTGACGGACCAAAAGGTTAGTGCCTGCTAATGTTAAGAAATGGACCGAAAGGATTCCCTATTTCTAACCATTTGCAACACTTATTGAGATTACTAAAGTAATCTTTTTTCTAGGAAGTTGAAATTGTTCTGAAATCGGAAAGTAAATGTGAAGAGGTCGTTTCCCTCCTCGTACACCAGTATAAATCACGAGAAAATATCATGCTTGTTCTTTAAGATGTGGTTAAAAAACACTGCACATTCTGTACACTGAGAATCTGTATAAACATTGTCTTTTTCATCTTCCAATTATTTCAAATGTCAAGGGGGTTCCTGGTGTAACAACAGGGAGTGTATCTAGATGCACAAGTCAAGCCTTCTTCTCTCTTTGATGTCATCATAAGTGAGTCAAGGCCCAGAAAAACACGGTTTGACCTGCCCTTGATTTTATTAATCAATTCAATAATTTATCTCTTGATCTGCTGCTGAAACTGTAGTTGTGGAAAGCAAGAAGAAAAACAGGTATTTTTGCGAGATTCTGTGCTCCAACTCCACATTGTGACATTTCCACTTGATCTGTCCGTTCCTCTCTGCAAGGGAGCAAGGTTGTTAGGGGTGAGGACTTGAATAGAAGTGCACAAAGTCAAGATGCAAAAGGTTATGTCTCTCCATTCTGAATCCCAGTAGGGATTTGGACTCAATAGAGCAGCATTTTATTCACAGGGATTATGCCAATAGCAGTGCTGATCAATAAGGCTGATTGAGAGAGTGCTGTGAGAGGTCTCTCTGCTGAGCAGGCAGACCCTGCTCCTGGGGGCCCACAACAAAAACTCACAGTTAGACCTCCATCTATTTCCTCTGCTATTAGTGGCAGACATGGACAGACGCAGCCTTCAAGAAAGAGATTGGCATTCAAGAAATGTGTGGCCGGATGTGAAAGAGTgggtgcagacagagagagatggagagagagagaagggggggaggagagagaggaagaaagagaggtggGAGAGTGAATGCATTGGAGAATGCAGGAGAGGGTAAAGGGCTGACCTCACAAAGAAAATGTGCTGCTAGATTGTTGTTAATCAACCCTCGGAACACAATCATTTCCCCTCTAATCACCAGGAGCTGACTCATGTCTCTGAGGATGGCCAGAGAGAACTCTTCTCCCAGATACAGATCTATTACTGTCCATAGGCCCCCAACTGCCCTGGGCCCCAGGTTATAGTGCagaagagaacacacacataatCAGGATTGGACTCTTTCAAGGACTATCCTTGACTACACATTCCATATATTTATCACATATTTTACATCTCATTATCTTATGTAAAGGGATTTTGTTAAAACACACATAATGAACACATCTA
>XM_021607210.2
ggggagaggggatccAGGCAGAGGACACTGTAGCTACGTAGCTAGTGCTGTGTCTTTAAAACGCCAGGCCCCTCCTCCCACCACACAGTCAGAGCGGAGCAGCAAAGCAAGTTGTGCTGGCAATAGCCTGAGCCCCACGATAAACCCTGGCATCAGCCTGCCTTCATCCGGCAGTCAGCGAGGACACTTCAGGGCGCAGGGGCAGAGAGACgggacggagagagagtgagacagaaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagtgtcgtTAGGAGCAGGGCTCTGACTGATACAGATCCTCTCCACAGCTCTGTACGCAGTAGCTCTTTCTGCTGTTTCCCGACGCCGGCAGGGTTGATGAGGATGGcgggtggcttcttcctttccaCAGCATCGTCACTAGAGCAACGGTAGCATCAGCATCTACAGCAGCAACAGTTTCAGCCTCAGCATcatcagtagcagcagcagccggATCTATACTCTGCTGCTGGTCCCTATTCTTCAGCCGCCTCCTCTCTCTGGTGTCTAAGAGTGCTGCTGTCAGGGCCGTTCAGCCCACCTCCTCTTCCGactcctcctgcctcctcctcaagcctgcctcctcctccatcccGCCTCTTCCTCCACATCTCCATCCTCCACatgctctccctccttccttccgcTGAGACACGGCACTGAATGAATTCTTCACCCTCTGACTGGAGCTGCTTTCTCTGGGAAGACAgTGTCATGTGTGATTGGCCAGCTTGCCCTCTGGCAGTAGCATCAGCCTGGATTCAGTGTGTGTCTCACCCCCCTGCCTGTGCCTGGGCTCCGGCTGTCCCTGGGGACGCGCTACTGGGATTTACCTCTTACTGCTGGATGGAGATGGCGCAGGGCTTTCTGCCTTTTTGAAAACTGTTCACAGAAGGAGAAATACACAGATAAACAGAATAAGGAAATATAATGAATCaatcagcagcacaaccaggcAGACTACTGGATTCCCTTAGCAACAACTCAGGGAGAATAAGAGAGAAGTGAATTGTCTCTTCCTATCTTCTCTGGTGTCTGGTTTCTGGGCGCAACCCTGCAGACCAGAGTGGACCAACAGTCGGATCTGAAAGAGCAGGACAAGGGGCACTGCAAGGGCACGAAGGACACGCAAGTCACCCTAACACCAGGGGAAGgaccctcctcttccacctcctcctgttcATCACCATGTTGGTTTGTCATTCTTCCCCTGCACATTCTATTAATTAGTCACATTTTACTCGCTAAGACATCCGTTTATACTCATTCCTGCCAACTGGAATAAGCCCTGCCACTGAAGAAAATATTGGAcattcttcacacacacacaaacaagcacagagagactctcaccctcctcctaccttccttcctcctctctttgaCGAGAAATGAACAACACATGTCGGTCATCATCTGAGCATGAAATGGATGTGTGCAGAAGTTGCTTTTGATGTGGGCTATTTCTTTATTCCTTCAAGATTAGTTTATTCTCCTGTCACTTCTGAGAGAAAAGGAACACTGCACAGCAGAGGACACAGGAGGAATATCTCTTGTTTTCAAAAGGatttgtcctcctctctccctaaaAAAGACAGAAGCCAAACTGAGGGAGTATATGTAGAAGGCGAAGCTTGTCCCTACTGCCTACCAATAATGTAGACCAAGATCATTATCAAAAAAATAGCAACTGCTGGGAGTTCTACTTTTCTGTTACGCTTGGATATTCTGATCTACAGGGGAGGTTGAACATGTACCCCTTGTTCAGCTTGACAACCTGGGATGCACTCTTTTACAGTAACCTGGCTGACACCAAGTCACTGCATCGTACCCGCTAAATAAGATTGTAAAGGGAggtgagtgggaggggaaaagAGCAACTTCCTCATACAGACGATCTAAATAAATATCCTCCTCAGAGACCGATGCAAACGTATACACTGACACATGAGATGAGTAGGCTCTCTGGCTCAACACTATTATATAAGGTGTTTTCACACACACCATCTTAGCTCCTGTTCTTCTCTTTTTCCTCCTGTTCCGTGGATTTAACTTGAGTTTTTTCATGTTTCTTTTGGCTTCATTTTTGGTACGATCCATCCTGGAGTCATGGATGGAGGAGGGTAACGCAAGGGGGTTGAGCGCTCAGGCCAGGCAAGGTCTTTTGGCTGTCCAGGGGATTTTAAGATGTTGAGGTCTCCCTGCGTGGCCGGGGCCCCTGTTCGGATCAGTAGCACTGAGGCTCCTTGCGGCCAGAGACATGGACCCCGACTCGGCTCCCCCCCGCCCCTGCCCTCAGCCTCAGCCTGCCAGCCCCTGGCCCCAAGTCGCCCTGTGAAGGATGTCCCTCAGCAGAGCTCCGGCCCGGGACACCTCTGAGACCCCCAGCCAGACCCCCAGAGAACGGATCCGCAGCCACATGAAGATGGTGATCAACCAGCTGGACGGCATTCTCAAAGAGCTCAAGGATGTGGCCAAGGAACTCCGGGAGGTGGTGGGTCAGATCGACAAGCTGACGTCAGACTTTGACTTTGACCTGGAGCTGGATGACTGGACAGTGGCCACAGCGAGCAGCACGTCCAGCAGCGAGAGGGGCCTGGGAGAGGCCTTCAGGCTGGACTTCCTCAATCCTGACGTGCTCTCAGACAGCTGGGAGTTCTGCAGCTATCTGGAGGCCTCCGTCGCTGCAGCAAACGCCGCCCACAAAGCAGCGCCAACAGAGCAGCCCACGGATGCAGGGCTGGAGCCGGGGGCGGGGCGTGGGTGCATCCctacccagacccagaccccAACCCCACCCCCCACAACCGCCTCAGCCTACTCCCAAATGAATGGGGGGCTGCCAATCCCTAACGGACCTCTCATAGTCACCCCAGACTCGTCCAGTGCCAGCGAAGAGGCTTCCAGCTCCACACACAGCCACAAGACCTCTCGCACGTCCGGCACCAGAGAGAGAGTCCGCTTCAGTGACAAGATCCTATACCACGCCCTGTGCTGTGATGATGacgaggaggatgaagaggagggagatgaggagaaggGCGGCTGTGCGACCCCAGACACTGACGACAGTGAGCCCAGTCCTAGTCAAGCCGGCTCGCCCACACCACCGCTCTCCTCCTCAGAGCACTCCGTCCTCCATAACTGTCTGGACCCTTCTTATGTCTCGTTCCCAGTGAACGTGGCAGCGGGGACTCACACGCTGCCCAGAAAGGGTCTTCTCAATCTCGCAAGCTGCCGGAAAAAACTGCTACGGAACAGCAGCACACAGACTGTTTCAGATAAAAGCACCCAAACAGTACTGCCCTATATTCCAGCCAAACAGAAAACAAAGGACCACTGAGAAACAGTAACTTTACAACAACAGAACTAATGAAAAAGGACTGTGTACTATTTAATATTAAATACATAGATCATAGATTaatacacaaataaataaataaatacatattaatTACTAAATAAATACATGATATGGGAAATTACTCGACTACCTAAAGTCATTTTGAGGCTCAGGGAAATAAAGGATAAAGGCAGTTCCTTATGGCAGAGAGAAAAGGGATATTGACGGACCAAAAGGTTAGTGCCTGCTAATGTTAAGAAATGGACCGAAAGGATTCCCTATTTCTAACCATTTGCAACACTTATTGAGATTACTAAAGTAATCTTTTTTCTAGGAAGTTGAAATTGTTCTGAAATCGGAAAGTAAATGTGAAGAGGTCGTTTCCCTCCTCGTACACCAGTATAAATCACGAGAAAATATCATGCTTGTTCTTTAAGATGTGGTTAAAAAACACTGCACATTCTGTACACTGAGAATCTGTATAAACATTGTCTTTTTCATCTTCCAATTATTTCAAATGTCAAGGGGGTTCCTGGTGTAACAACAGGGAGTGTATCTAGATGCACAAGTCAAGCCTTCTTCTCTCTTTGATGTCATCATAAGTGAGTCAAGGCCCAGAAAAACACGGTTTGACCTGCCCTTGATTTTATTAATCAATTCAATAATTTATCTCTTGATCTGCTGCTGAAACTGTAGTTGTGGAAAGCAAGAAGAAAAACAGGTATTTTTGCGAGATTCTGTGCTCCAACTCCACATTGTGACATTTCCACTTGATCTGTCCGTTCCTCTCTGCAAGGGAGCAAGGTTGTTAGGGGTGAGGACTTGAATAGAAGTGCACAAAGTCAAGATGCAAAAGGTTATGTCTCTCCATTCTGAATCCCAGTAGGGATTTGGACTCAATAGAGCAGCATTTTATTCACAGGGATTATGCCAATAGCAGTGCTGATCAATAAGGCTGATTGAGAGAGTGCTGTGAGAGGTCTCTCTGCTGAGCAGGCAGACCCTGCTCCTGGGGGCCCACAACAAAAACTCACAGTTAGACCTCCATCTATTTCCTCTGCTATTAGTGGCAGACATGGACAGACGCAGCCTTCAAGAAAGAGATTGGCATTCAAGAAATGTGTGGCCGGATGTGAAAGAGTgggtgcagacagagagagatggagagagagagaagggggggaggagagagaggaagaaagagaggtggGAGAGTGAATGCATTGGAGAATGCAGGAGAGGGTAAAGGGCTGACCTCACAAAGAAAATGTGCTGCTAGATTGTTGTTAATCAACCCTCGGAACACAATCATTTCCCCTCTAATCACCAGGAGCTGACTCATGTCTCTGAGGATGGCCAGAGAGAACTCTTCTCCCAGATACAGATCTATTACTGTCCATAGGCCCCCAACTGCCCTGGGCCCCAGGTTATAGTGCagaagagaacacacacataatCAGGATTGGACTCTTTCAAGGACTATCCTTGACTACACATTCCATATATTTATCACATATTTTACATCTCATTATCTTATGTAAAGGGATTTTGTTAAAACACACATAATGAACACATCTA
>TU604460
aggggatccAGGCAGAGGACACTGTAGCTACGTAGCTAGTGCTGTGTCTTTAAAACGCCAGGCCCCTCCTCCCACCACACAGTCAGAGCGGAGCAGCAAAGCAAGTTGTGCTGGCAATAGCCTGAGCCCCACGATAAACCCTGGCATCAGCCTGCCTTCATCCGGCAGTCAGCGAGGACACTTCAGGGCGCAGGGGCAGAGAGACgggacggagagagagtgagagagagagagagagagagagagagagagagagagagagagagag

Function

NR:

description
PREDICTED: UPF0583 protein C15orf59 homolog

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607209.2 False 5088 mRNA 0.49 3 64218174 64277755
XM_021607210.2 False 4991 mRNA 0.49 3 64218174 64277755
TU604460 True 268 lncRNA 0.58 2 64218180 64234840

Neighbor

gene id symbol gene type direction distance location
LOC110526331 LOC106587235 coding upstream 185882 64026685 ~ 64032292 (+)
LOC110526326 eif3j coding upstream 455287 63758243 ~ 63762887 (+)
strc1 LOC106587240 coding upstream 460936 63730434 ~ 63757238 (+)
LOC110526325 ctdspl2 coding upstream 490344 63702297 ~ 63727830 (+)
golm2 casc4 coding upstream 519059 63684063 ~ 63699115 (+)
LOC110526337 LOC106587231 coding downstream 217064 64494819 ~ 64499621 (+)
LOC110526343 LOC106587228 coding downstream 475274 64753029 ~ 64765798 (+)
LOC110526344 LOC106587225 coding downstream 491344 64769099 ~ 64781704 (+)
chrna5 LOC106587222 coding downstream 554869 64832624 ~ 64851098 (+)
LOC110526346 NA coding downstream 577221 64854976 ~ 64858185 (+)
G533766 NA non-coding upstream 7125 64210515 ~ 64211049 (+)
G533762 NA non-coding upstream 9774 64208142 ~ 64208400 (+)
G533761 NA non-coding upstream 10265 64207703 ~ 64207909 (+)
G533752 NA non-coding upstream 21096 64190790 ~ 64197078 (+)
G533748 NA non-coding upstream 32255 64185711 ~ 64185919 (+)
G533864 NA non-coding downstream 75135 64352890 ~ 64353122 (+)
G533889 NA non-coding downstream 115406 64393161 ~ 64393475 (+)
G533898 NA non-coding downstream 127175 64404930 ~ 64406861 (+)
G533903 NA non-coding downstream 137353 64415108 ~ 64415435 (+)
G533907 NA non-coding downstream 137963 64415718 ~ 64416829 (+)
G532489 NA other upstream 874419 63308533 ~ 63343755 (+)
LOC100750227 LOC106587244 other upstream 878676 63338236 ~ 63549030 (+)
G532237 LOC106591742 other upstream 1019440 63032931 ~ 63198734 (+)
LOC110526311 LOC106587159 other upstream 1203188 63005672 ~ 63068991 (+)
G532259 NA other upstream 1395558 62820420 ~ 62822616 (+)
G534453 NA other downstream 512567 64790322 ~ 64847104 (+)
G534653 NA other downstream 835525 65113280 ~ 65169563 (+)
LOC110526356 LOC106587213 other downstream 878754 65065380 ~ 65178884 (+)
G535150 LOC106587155 other downstream 1569868 65847623 ~ 65849441 (+)

Expression


Co-expression Network