LOC110526343 (LOC106587228)


Basic Information

Item Value
gene id LOC110526343
gene name LOC106587228
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64753029 ~ 64765798 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607229.2
tgattgatagattttgttgtggattaatacatgaagaaaacaaaacatttttattGTCATACATTTGATTGTTTATAGCCTAAGTAGTATCCCCGAAATCTGCCTATAACCTATAACAGATCACATGGTTAAGTATCAACATTGAAGGAAGAATGGAAAATAGCAATTAGTCGATCCAAGATTTGCGCTCAGGAGatcatggtgtgtgtgagagcgatgCGCAACGAGTAAGGAAGGTGGAACGGTGTATGTTGGGGAAAGGGTCTCGTTTCTATCCCAACGCTGCTGCAAATCTCAACCTGGTACAGACACACAGTTTTCAGTAAACATTTGTTCTAACTAATGCGGGTGTCGTTATTTGTAGAGCCGGACAGGCGCGCGTGTATGGAGCTTTTTAGGAGTTGGGAATGCTCGGTAAGCACGTTAgatcctattattattattaggcttCCTGAATGAGGACACGGATGGATTTCGTGGCACTGTTGTCAAAATGACTCGGACTCTCACTCTCCTCGCTTTCCTTTTCACTTTGTTAAAACGTTGCAGTTGTGCGGACTCAGAGGAGCGTCTGATGAACTGGCTGCTTAGAAACGATCGCTACAACAAGCTGATCCGCCCAGCTGTGAACAGGACAGAGCGAGTCACTGTCAAACTACAGGTGTCCCTGGCCCAACTCATCAGTGTGaatgagagagagcagaTTATGACCACCAATGTTTGGCTCACACAGCACTGGGATGACTACAGGCTATCATGGGACCCTTCTCAATATGATGGCATTGACAAGCTTCGTATTCCTTCCAGACACATCTGGCTACCTGATATTGTGCTCTATAACAATGCGGATGGAACCTATGAGGTAACAGTCTTCACCAATGCCATTGTCCAGTTCAACGGCAGCATCGTCTGGCTGCCTCCGGCCATCTATAAGAGTGCCTGCAAGATCGAGGTCAAGCACTTCCCCTTTGACCAGCAGAACTGCACGCTCAAGTTCCGGTCATGGACCTACGACCACACCGAGCTCGATTTGGTCCTGAAGACAGGGGTGGCCAGCATGGACGACTTCACTCCCAGTGGGGAATGGGACATCTTGGCCCTGCCGGGCAGGCGGACAGTTAACCCTCTGGATCCTACCTACGTGGACCTCACCTATGACTTCATCATCAAGAGGAAGCCGCTGTTCTACACCATCAACCTAATCATCCCCTGTGTCCTCATCACCTCTCTGGCCATCCTGGTGTTCTACCTGCCGTCTGACTGTGGGGAGAAGATGACACTGTGTATCTCAGTCCTCCTGGCCCtcactgtgttcctcctcctGATCTCCAAGATCGTCCCTCCCACCTCGCTGGACGTGCCTCTGATCGGGAAGTACCTAATGTTCACCATGGTGCTGGTGACCTTCTCTATcattaccagtgtgtgtgtgctcaacgTACACCACCGCTCCCCCAGCACACACACCATGCCCTCCTGGGTCAAGGTAGTGTTCCTCAACAAGCTGCCCCATCTACTCTTCATGAGACGCCCGCAGAATAACTCTGCCCGCCAGCGGCTACGCCAGCAGAGACAACTCCGAGCTCGCAGGTCCATCCTGGCGGACCTGGGCTACCCTGCCACCACCACGCCCAAAACAGCCACCGCTGCCGCCATGTCTTCCTCTtctgccttcctctcctctgcctcggCCTTCGCCTCCCCGGGACACTTTTACAACAAAGTCACAGCTCCgctggggtacacccacaccttCAGGAAGGGGGAGGCCCGCTCCACCGAGTTCCTGCCCAACAGCTTCCCCTCCTCCCAGGACCTCCGTCAGAGAGGCAGCCCAGACTGGGGGGGAGATGTCCAGGAGGCAGTGGACGGGGTCCGCTTCGTGGCTGATCACATGATGGGGGACGATGATAACCAGAATGTGATCGAGGACTGGAAGTATGTGGCAATGGTGGTGGACCGTATGTTCCTGTGGATCTTTATAATAGTGTGTGTGACTGGAACCCTGGGTCTTTTCCTCCAGCCTCTATTTCAGCATTCAATAGTCCCCATCCAGCAGCCCAGCTCAGACACACCCCGTACCTGAACCCCCCCCCAAGAAGTATGGGGGTCATACATAGAAACAAGGGTCATAGAACATCAACCAACGCCATGTGGCCTACAGCAATACAagtctctgtatctctttctgtTTCTATTTCCTGGTCCTAACGTGACACAACGGTACAATGAAGAGTTGACTTTTTTTCATGTAGCTGAAGCAGAGATACAAATATGTCCCTCGAAAACTAGACTGAAAGTACAAGCATTACCCGGGTGGAGTAATAACCCACATAATACAGAGAGATATGTCAGATATCATTTGACTCCTATCCATGTTATATCACCCTGTTGTTGAGATGTAAAAGTGTaatgaaaaaaaatctataaatgtATAAAAAAGTTCAGTGAGTTTGATTAAATTCATTAACACCCAATAAAGTCTAAAGTGGTGGAGTACTTCATGAAATTATGTTCAGTGTGATTAGATAAAATAGCTTGACTCAGTTAAAGCAATTTTCAAAGTGCAAATTAGAATATTAGGTCACATTGATAAGATGGATATTGGGCAAAATCATGTAGCTCAGAACATTATGACTCAAGCTAGGGTGTTATAAAGAGGCCTCCTAACTGATACACCCCATATATAAAATGAGTTGGTGTATGAGTTACAAGTCTATAACCTGTGAATTACGGGGGATATTCCCCACAGATGTAGGATTTTGATGCAATAAACAGTTCCAGTTTAAAAACA
>TU604826
GAGTACTTCATGAAATTATGTTCAGTGTGATTAGATAAAATAGCTTGACTCAGTTAAAGCAATTTTCAAAGTGCAAATTAGAATATTAGGTCACATTGATAAGATGGATATTGGGCAAAATCATGTAGCTCAGAACATTATGACTCAAGCTAGGGTGTTATAAAGAGGCCTCCTAACTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607229.2 False 2794 mRNA 0.48 6 64753029 64765798
TU604826 True 180 lncRNA 0.34 1 64765499 64765678

Neighbor

gene id symbol gene type direction distance location
LOC110526337 LOC106587231 coding upstream 253408 64494819 ~ 64499621 (+)
insyn1 LOC106587233 coding upstream 475274 64218174 ~ 64277755 (+)
LOC110526331 LOC106587235 coding upstream 720737 64026685 ~ 64032292 (+)
LOC110526326 eif3j coding upstream 990142 63758243 ~ 63762887 (+)
strc1 LOC106587240 coding upstream 995791 63730434 ~ 63757238 (+)
LOC110526344 LOC106587225 coding downstream 3301 64769099 ~ 64781704 (+)
chrna5 LOC106587222 coding downstream 66826 64832624 ~ 64851098 (+)
LOC110526346 NA coding downstream 89178 64854976 ~ 64858185 (+)
LOC118936302 NA coding downstream 115924 64881722 ~ 64884136 (+)
LOC110526348 NA coding downstream 125888 64891686 ~ 64895115 (+)
G533991 NA non-coding upstream 179957 64553864 ~ 64573072 (+)
G533953 LOC100194703 non-coding upstream 245931 64504106 ~ 64507098 (+)
G533907 NA non-coding upstream 336200 64415718 ~ 64416829 (+)
G533903 NA non-coding upstream 337594 64415108 ~ 64415435 (+)
G533898 NA non-coding upstream 346168 64404930 ~ 64406861 (+)
G534445 NA non-coding downstream 7849 64773647 ~ 64774014 (+)
G534449 NA non-coding downstream 19822 64785620 ~ 64804863 (+)
G534509 NA non-coding downstream 190732 64956530 ~ 64957769 (+)
G534510 NA non-coding downstream 196641 64962439 ~ 64964242 (+)
G532489 NA other upstream 1409274 63308533 ~ 63343755 (+)
LOC100750227 LOC106587244 other upstream 1413531 63338236 ~ 63549030 (+)
G532237 LOC106591742 other upstream 1554295 63032931 ~ 63198734 (+)
LOC110526311 LOC106587159 other upstream 1738043 63005672 ~ 63068991 (+)
G532259 NA other upstream 1930413 62820420 ~ 62822616 (+)
G534453 NA other downstream 24524 64790322 ~ 64847104 (+)
G534653 NA other downstream 347482 65113280 ~ 65169563 (+)
LOC110526356 LOC106587213 other downstream 390711 65065380 ~ 65178884 (+)
G535150 LOC106587155 other downstream 1081825 65847623 ~ 65849441 (+)
G534130 NA non-coding upstream 4994 64760234 ~ 64760505 (+)
G534128 NA non-coding upstream 7384 64757830 ~ 64758115 (+)

Expression


Co-expression Network