LOC110526344 (LOC106587225)


Basic Information

Item Value
gene id LOC110526344
gene name LOC106587225
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64769099 ~ 64781704 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607230.2
TCTGTAGCAGCTTGTCGGCACCGCGCGCTTTTATTACTTCCACTTCCCACTTTCTCTCTTCTTCTGCCTCCTTCTGTCGTCCGTGTCCTGATAGATTGAGGATTCATTTTCTGCAATCCTTAACAatgaacgcccaatttttcttcattttttcatGTTCGTTCTTTTTTCCCCATTTGTCGGGAGGCTCCTGCTCTGAGGCAGAACACAGGTTGTTCTCAGTGATATTCTCCAGCTACAATCAGTACATCCGCCCAGTGGAGAATGTGTCTGAACCAGTTATCGTGCAGTTTGAGGTGTCCATGTCCCAGCTGGTCAAAgtgGATGAAGTTAACCAGATTATGGAGACAAACCTGTGGCTGAGACATATCTGGAATGACTACAAACTGAGGTGGGATCCCAAAAACTTTGGAGGAGTGGAGTTCATTCGAGTGCCTTCTAGCAGGATATGGAAGCCAGATATCGTGCTGTACAATAATGCAGTGGGAGATTTCCAGGTGGACGATAAGACCAAGGCCCTGCTTCGCTACAATGGGGATGTGACCTGGATCCCTCCGGCCATCTTCAAGAGCTCCTGCAAGATTGACGTTACCTACTTCCCCTTCGACTACCAGAACTGCACCATGAAGTTTGGCTCTTGGACGTATGACAAGGCCAAGATAGACCTGGTTCTGATTGGCTCCACCATCAACCTCCATGACTTCTGGGAGAGTGGCGAGTGGACGATTATCAACGCCCCGGGTTACAAACATGACATCAAGTACAACTGCTGTGAGGAGATCTACACAGACATCACCTACTCCCTGTACATCAGACGGCTGCCTCTCTTCTATACCATCAACATGATCATCCCTTGTCTGCTCATCTCCTTTCTCACTGTGCTGGTCTTCTACTTGCCTTCTGACTGTGGGGAGAAGATCACCCTCTGTATCtccgtcctcctctccctcactgtgTTCCTCCTGGTCATCACCGAAACCATCCCTTCTACGTCGCTGGTCATCCCCCTCATCGGGGAGTACCTCCTCTTCACCATGATCTTCGTCACCCTCTCCATTGTCATCACCGTGTTCGTGCTGAACGTGCACTACCGCACGCCCAAGACCCACACCATGCCGTGCTGGGTGCGCAGTGTCTTCCTGGGGCTTCTACCCAGGGTCATGTTCATGACCCGGCCGGAGAGGGACCCTGAGAGGCTGCCTGGGGGGGTGGTTCAGCAGCTGATGCCCCAAGCCTCACGGCCCTGTGTGGTCTACACCACAGGAACCATGCAGGGGCAGCAGAAGCCCCAGGCCCTGGTCTCCACCGTGGCTGCCAGTGTGCTCCCAAGCCTGGCCCAGCGACAGCGCCTCTTCATCAGCACGGAGCTCACCAACCTCAATAACCTTAGCCttggtggggatggtggtggtgaCTCGGTTAATGCGGGCTCCAGCTTCCTGTGTCGCGAGGGCCGCTGCAACTGCTGCTGGCGTCAGAGGTCCACCAAGCTGCCTACTGAGacgggaggagggggtggaggggtggggagCATCGGGACCCACAGTGGAGGAGGGTCTGCTGGGATTGGGGGGGTTTGTGGAGGCGGTGGAAGCTCCTGCTCCAGCTCAGAGTCTCTGGATGGCAGGCTGAAGACTCTGTCCCCTCACTTCTCACCGGAGGTCAGGGAGGCCATGGAAAGTGTCAAGTATATCGCCGAAAACATGAGAATACAGAACGAAGCCAAGGAGGTCCAGGATGACTGGAAGTACGTTGCCATGGTGATCGACAGGATATTCCTGTGGTTGTTCATCTTGGTGTGTATCCTGGGGACCGCTGGGCTCTTTATCCAGCCCCTCCTATTGTTCAATATGTGACCCACTCATACACACAGCAATTACACAGTGACTGAGTGTTTTAAATCATACATGCACAGTCATTTTGTGTATCACCCAGTGATGCTGACCAAAGAAGCTGAGACGAACCAATACTGTGAACGGAAGGGAACCAGATTATGGAGGAAGGCAAGCTGATGCCAGCTGTTCCATGTCACTTCTCAGTATGTAGATACGTTTCTTATTGCTAaagtgtggtgtagtagtgatCACTTAGCTCCTGAGGACCAGACTCTGAAACCATGGCAACGTATAACTCCCGTACTGCTGCCTACCCATTCCCTTTTTTGTTTGCTTTGTGTTAATGACTTCATCATAGTGTCACTTGATTATGCCTGGCACAAAGAACCACACTATCGTCAACAAAAGGACCGTGACTAAAGGAACATCTATTGGACCAAAGGATCCCAAACATGTACATAGCAATGACTGCTTAAAGGGGGCTTTCCAAAAGTACATAACAAGTATCTCAAGTCAATTTCACACCTTATTGAAGTCATATCATGTTTTCAAATGTTGAATATCACCGAGTCATTTTGATATTGTTTATTTGTGAAATATGAATGTATTCCTAAAAACACATGCTGTATGTTCTTATTTACTACAACTATACAGCACCATTTCAATCTGATTCTAATGCTCAATAAGGTTTCAATGAACCACGGTGTCATATAATATACAGATAAGCTATTCATAGAAATCACAAACTGTTGAACATTAAAAGGCTATGATGCAGGATGGGTAACGTTATTACACCATATGGGTGAATGTGGAAAAACTATGAAAGCAACCTGAAATGATTTTCATTGTGCTGTGAGGGGTGACACCATGTGGTTATTATCTGCTACTACAAGTGACCACAATATGATCCAGAGGTCACTTACCATATGTTTGCAATCAAAGACACAAGATTTTGTATCTtcattttcagttttttttatttgtgcTGGAGAAGCACACACAACTTTGAAAACAGCTCTTTAAAGGCTCTTTCAACAGAAACGTCTGTCTGCAATGATCCCATGGTCATAGGATGAAGTGACTTCTGCAGTGGACTGAACACATGCTAACCTACCTGTAAACTCATTGCATTCCCAAATCGATATTTCTCTCCCTTATGAAAATTGAGTTTGGAGGTCCAGCTGGCAGGCAGGATGTAGATGCGATTATCAGTAGCAACAAGACCATGTAGAGGTTGGGTATAACCCTGTTacatcctccctgcctctctgcctcctaGCCTGGCCTCCCATCCCTGCCTCTCtagctccctgcctgcctcccctctctgccCTGGGCCCCCTTCTGCTTTATTGGACCACAATCAATATGGAGACCTGGTGATGAAGTACATCATTAGTCTGGGGCCTGGGCTACGGTCTTCATCTCACCATCCTACCGCTATGCCAAAGAGCATTTCTCCTGCTTTAACTTGACACTACTTATACTCTCTGTTAATAAGGAGGATGTGGTTGAGATCTCGTTATGTTGTACCATCATTCAAAAAACAGTTGGGTGTACAAGAGGAGGAAATGCACAATTATGAGTTATAGATATCTATGGCCTGTGGTATCTATGATAGAGAGTGAAACATTTTAAATAGGATTTTTGGGGAGCATTTCAATCCCACATTTGGGCAGACGAGGAATCTCTGGATGTTGTTTCTGTGGCTGTATGTTGTAGTCAGTAAACTGTAATCAGGTTGTCACTGAATCGTAACTGGATGTTAGCCAGGAAGCACAGTCACATACCGTTGTACTCTATCCCTTCTGATAACATTCCCCCTGCTGATTGATTGAATTAAAGCTCACTCAGTGCTCATTTCAGTGAACTAGTTTGAGGGGGAGATCTGTAACAGACCGTACTAAAGCCTGAAGGTTGTGGGGAGGCTGAGGGGATGAGTGCATTTATAGAACAGCGATGGTTCCATGACCACACTTGTGTGATGAGCATCCTTGTCTGAGACCTGAAGAGTTGCATTGCATGCAGGTATACATGCATGCGTTCTGTCCCTGTCGGTCACACTTAAGAATTGTCCCAGTGTTTTTTAGTCAGCATGAAATCATTTAGCATATTTTCATTTGAGAGGAAAGCAAGTTGAGATCATTGATTCCGTGCACCTGTTGTTCTTTTTAGTTACACATGGTCAATGTTAAATAATACCCATCATCCTCCAGGTCTATGGTGCAAACATATCCTGTAGCTGCGACAGTCCTACAAATACAGGAAATGACGTCATTCGTATTCACTCTTCTTAGTTAACATGTCTCAACTAAAAGAATCCCTGTCTAGTTTCAGGTCCATACCACAAATACACAAGGTAGAAAGAGCCAACCAACAAGTGTTTCAACAAGACTTGAACACAATGATCATGTTCATCCTCATCCTGTGTGCCTTGTCAAGAGAGGCCATGGTCCAAACCACAGGCAGGTCAAAGTCCATTAATTATTGAAGATGATTGAACTCTCTTTTAGATAATTACAATATGACACTCTACACATAAACGGTTTACATGTTGCAGATATTTTATGAGCCAAATACTTTTTATTTTCTGAAATATTAGCCAAGAAGATTTTTCCAGCAAAGATCTATTGGACTTCTACAGGAACAATAATGGAGGGAAGTGACCTTGTGGTAAAATGTAGTACACATGGGCGCAAGGAAGACAAAGTGGCATATGTTTACTTGTGCATTAACGGGGTTGCAGTGGAACAGAAGAGAGTTATACAAGAAGACACCTCTTTCACCATGAAAAGTGTTACTGGCCAACAGAGTggcaattacagctgtgtgttCTCTAAAACCCAATATCCACTCTCTGAAGTGCAGGGAAAAGGAGATAATTCCCTTTCCATCCAGGTGATGGACCGTATACTCCCTGCAGACATATCACTTGCAGGCTCAAGAACTGTGAGAAAGGGAGATGGTGTGGAGTTTAAGTGTACAATCTCAGGCCCAAGTTTTCAAACAAAAAATATCAGTGACTTAGTTCACGCTTACCTCTGCAAGTATGGCTCTGTTGTTCAGATCCAGGTGTTTGACGTAAAGAGCACGGAGGCAACTTTTACGATTAAAAGTTTTAATAAGAATGACGCAGGTAACTACAGTTGTGTGATTGATCTGCAATCAAAAACCCTCAAAGATGAAGACAGAACATTATATGGAAATAATGCAGTATTTCTACAGGTTAATG
>TU605157
ACTTTCTCTCTTCTTCTGCCTCCTTCTGTCGTCCGTGTCCTGATAGATTGAGGATTCATTTTCTGCAATCCTTAACAatgaacgcccaatttttcttcattttttcatGTTCGTTCTTTTTTCCCCATTTGTCGGGAGGCTCCTGCTCTGAGGCAGAACACAGGTTGTTCTCAGTGATATTCTCCAGCTACAATCAGTACATCCGCCCAGTGGAGAATGTGTCTGAACCAGTTATCGTGCAGTTTGAGGTGTCCATGTCCCAGCTGGTCAAAgtgGATGAAGTTAACCAGATTATGGAGACAAACCTGTGGCTGAGACATATCTGGAATGACTACAAACTGAGGTGGGATCCCAAAAACTTTGGAGGAGTGGAGTTCATTCGAGTGCCTTCTAGCAGGATATGGAAGCCAGATATCGTGCTGTACAATAATGCAGTGGGAGATTTCCAGGTGGACGATAAGACCAAGGCCCTGCTTCGCTACAATGGGGATGTGACCTGGATCCCTCCGGCCATCTTCAAGAGCTCCTGCAAGATTGACGTTACCTACTTCCCCTTC
>TU605156
TTCTCACCGGAGGTCAGGGAGGCCATGGAAAGTGTCAAGTATATCGCCGAAAACATGAGAATACAGAACGAAGCCAAGGAGGTCCAGGATGACTGGAAGTACGTTGCCATGGTGATCGACAGGATATTCCTGTGGTTGTTCATCTTGTGATGCTGACCAAAGAAGCTGAGACGAACCAATACTGTGAACGGAAGGGAACCAGATTATGGAGGAAGGCAAGCTGATGCCAGCTGTTCCATGTCACTTCTCAGTATGTAGATACGTTTCTTATTGCTAaagtgtggtgtagtagtgatCACTTAGCTCCTGAGGACCAGACTCTGAAACCATGGCAACGTATAACTCCCGTACTGCTGCCTACCCATTCCCTTTTTTGTTTGCTTTGTGTTAATGACTTCATCATAGTGTCACTTGATTATGCCTGGCACAAAGAACCACACTATCGTCAACAAAAGGACCGTGACTAAAGGAACATCTATTGGACCAAAGGATCCCAAACATGTACATAGCAATGACTGCTTAAAGGGGGCTTTCCAAAAGTACATAACAAGTATCTCAAGTCAAT

Function

NR:

description
neuronal acetylcholine receptor subunit alpha-3-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607230.2 False 5067 mRNA 0.46 8 64769099 64781704
TU605157 False 557 TUCP 0.47 5 64769147 64776336
TU605156 True 565 lncRNA 0.45 3 64777381 64778182

Neighbor

gene id symbol gene type direction distance location
LOC110526343 LOC106587228 coding upstream 3301 64753029 ~ 64765798 (+)
LOC110526337 LOC106587231 coding upstream 269478 64494819 ~ 64499621 (+)
insyn1 LOC106587233 coding upstream 491344 64218174 ~ 64277755 (+)
LOC110526331 LOC106587235 coding upstream 736807 64026685 ~ 64032292 (+)
LOC110526326 eif3j coding upstream 1006212 63758243 ~ 63762887 (+)
chrna5 LOC106587222 coding downstream 50920 64832624 ~ 64851098 (+)
LOC110526346 NA coding downstream 73272 64854976 ~ 64858185 (+)
LOC118936302 NA coding downstream 100018 64881722 ~ 64884136 (+)
LOC110526348 NA coding downstream 109982 64891686 ~ 64895115 (+)
LOC110526349 LOC106587217 coding downstream 118097 64899801 ~ 64962147 (+)
G534130 NA non-coding upstream 8594 64760234 ~ 64760505 (+)
G534128 NA non-coding upstream 10984 64757830 ~ 64758115 (+)
G533991 NA non-coding upstream 196027 64553864 ~ 64573072 (+)
G533953 LOC100194703 non-coding upstream 262001 64504106 ~ 64507098 (+)
G534449 NA non-coding downstream 3916 64785620 ~ 64804863 (+)
G534509 NA non-coding downstream 174826 64956530 ~ 64957769 (+)
G534510 NA non-coding downstream 180735 64962439 ~ 64964242 (+)
G534530 NA non-coding downstream 182598 64964302 ~ 64964542 (+)
G534532 NA non-coding downstream 186093 64967797 ~ 64968004 (+)
G532489 NA other upstream 1425344 63308533 ~ 63343755 (+)
LOC100750227 LOC106587244 other upstream 1429601 63338236 ~ 63549030 (+)
G532237 LOC106591742 other upstream 1570365 63032931 ~ 63198734 (+)
LOC110526311 LOC106587159 other upstream 1754113 63005672 ~ 63068991 (+)
G532259 NA other upstream 1946483 62820420 ~ 62822616 (+)
G534453 NA other downstream 8618 64790322 ~ 64847104 (+)
G534653 NA other downstream 331576 65113280 ~ 65169563 (+)
LOC110526356 LOC106587213 other downstream 374805 65065380 ~ 65178884 (+)
G535150 LOC106587155 other downstream 1065919 65847623 ~ 65849441 (+)
G536406 NA other downstream 1821081 66602785 ~ 66604053 (+)
G534445 NA non-coding upstream 3367 64773647 ~ 64774014 (+)
LOC110526344 LOC106587225 other upstream 1045 64769099 ~ 64781704 (+)

Expression


Co-expression Network