chrna5 (LOC106587222)


Basic Information

Item Value
gene id chrna5
gene name LOC106587222
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64832624 ~ 64851098 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980693.1
TGTGCTGCTGGGGAAGATACCTGATAGTGATTAGTGATCAGACTcttctgggagagagaggggggctggCTTTCtggaggaggttgaggaggaggaggaggcgaaggaggagagagaggagagaaaggggggctGGTTTTCtggaggaggttgaggaggaggaaaaggaggagagagaggagagagagcgtgcTACCGTTCATTTAGAGGCAGCAGCAAGAGACTGAAGCATCGTCTGTCTGAGCTGAGGCAGGGCTGCATGGAATGGAGGAAAACTAGAGAGCAGCGCTGCTTGTCTGTCTGCCGACACACTGTCTGGACTCTCACGCTGCATTCAGGATAGATTGtgtgttgagtggatgatagGAATAGAGGATGCAGGTCTGATGTGCACAGTATGTCTGTTTGTGATCATATGTGAatgggtttgtgtgtgttcacTACATCCAAGCAGGTGAGTGTAATGTGTTCGCATGTACACtgttgtgcatgtgtgtatttgtgaaaTGTGTAagatgaaatgtgtgtgtttgcaaaTGTGCAAATTAGTTTCTATGTGTATGCAGTGCGTATCTGTATccatgtttgtgtgtacatgtaagGTATCTAAACTGATGCATACATATCCCATAACTTCCTCTGTTTGTGcactgtgttgtgctgtgttttcCTAGACTCTAGTTGTGTTGTAGTCATGGCTGCCTGAGGGACTGCTCCCTGGCTGTGTGGATCTGGAGCCCCCTCTGATATCATGCTGAGAGTTGGGCCAGCGGCCACCACTCTACTCCTGCTGCTGTCATACTGCTGCTGCCACCTGTGTCACTCTCTGGGAATCCCTAAACTGTCCTCCTATGCCAAGACAGAGGACAAACTGTTCAAGAACCTCTTCAGAAACTACCAGAAATGGGTGAGGCCTGTGGAATACCTCAACGGCACAGTACGGGTCAGATTTGGACTGGCCATCTCCCAGCTAGTGGACGTGGACGAGAAGAACCAGTTGATGACAACCAATGTGTGGATGAAACAGGAATGGTTGGACATGAAGCTACGCTGGGACCCTGATGACTACCTGGGCATCACTAACATCAGAGTCCCCTCGGACTCCATCTGGATCCCAGACATTGTGCTCTATGACAATGCCGATGGACGTTTTGAGGGCTCTGTCACCAAGGCTGTTGTCAAGTATGATGGCACCATCATCTGGACACAGCCCGCTAACTACAAGTCAGCCTGCATCATCGATGTCACCTTCTTCCCCTTTGACCTGCAGAACTGCTCCATGAAGTTTGGCTCCTGGACCTATGATGGCTCACAGGTTGACATCCTCCTGGAGGACTTCCATGTAGATAAGAGGGACTACTTTGACAATGGTGAATGGGAGATAGTGAAAGCGACAGGCAGCCGTGGTCTGAGGATGGACGGTCCCTGCCACTTCCCCTTCATCACCTACTCCTTTATCATCCGTAGACTGCCGCTCTTCTACACcctcttcctcattatcccctgtATCGGCCTTTCCTTCCTCACCATCCTGGTCTTCTACCTGCCCTCCAACGGCGGGGAGAAGATCTCCCTGTGCACCTCTGTGCTGGTGTCCCTCACCGTCTTCCTGCTCGTGATCGAGGAGATTATTCCGTCCTCCTCCAAGGTCATCCCTCTTATCGGGGAGTACCTGGTGTTCACCATGATCTTTGTCACGCTCTCAATTGTCATCACCGTCTTCGCTATCAACATCCACCACCGCTCCTCATCCACGCACCAAGGCATGGCGCCCTGGGTGCGCCGTATCTTCCTGCACAAGCTGCCTAAGCTGCTGTGTATGCGCAGCCACGTGGACCGCTATGCTACCCCAGGCGGGGCCAGGGAAGGACTGACAGGGAGAGAGTGGGCAGGACTGGCAAGAAGAGAGGGGGTAGTAGGGGGCATTACGAAGGGTTGTTCACCAGAGtccacccctcatctctcctctagGAATAACCTGCAGGCTGCTTTGGATTCTATCCGCTACATCACCATGCATGTGGTCAAGGAGAACGAGGTCAGAGAGgtggtgCAGGACTGGAAGTTTGTGGCTCAAGTTCTGGATCGTGTGTTCCTGTGGACCTTTCTCCTGGTCTCAGTActgggctctgctctgctcttcatCCCTGTCATCTACAAATGGGCAAACATCATCGTCCCCAACCATGCAGGTGGCAGCGGATAAGACTAAACTGAGACTAAGTGCACTGAGCACAATAATTTCAGAGACACTACAGTCAGTGCAGATAAAGAGACACTTACTCACGTGGGTGTGGGAGACCAGTTATAATTGCAATGGATTCTAGTTCCATCATGATTTTTGATTTGTGTAAATTAATGAGGGATTATTGTCTCTATGTTGCTGTATCTGTTTATAGATTAAATTAACAATCAATTGTTTTATATTCTGAAAGGAGGATACCTCCCTATAGGCATATCTCACAAAGTAAAGTATAACAATGAATACAA
>XM_021607231.2
GTGCTGCTGGGGAAGATACCTGATAGTGATTAGTGATCAGACTcttctgggagagagaggggggctggCTTTCtggaggaggttgaggaggaggaggaggcgaaggaggagagagaggagagaaaggggggctGGTTTTCtggaggaggttgaggaggaggaaaaggaggagagagaggagagagagcgtgcTACCGTTCATTTAGAGGCAGCAGCAAGAGACTGAAGCATCGTCTGTCTGAGCTGAGGCAGGGCTGCATGGAATGGAGGAAAACTAGAGAGCAGCGCTGCTTGTCTGTCTGCCGACACACTGTCTGGACTCTCACGCTGCATTCAGGATAGATTGtgtgttgagtggatgatagGAATAGAGGATGCAGGTCTGATGTGCACAGTATGTCTGTTTGTGATCATATGTGAatgggtttgtgtgtgttcacTACATCCAAGCAGACTCTAGTTGTGTTGTAGTCATGGCTGCCTGAGGGACTGCTCCCTGGCTGTGTGGATCTGGAGCCCCCTCTGATATCATGCTGAGAGTTGGGCCAGCGGCCACCACTCTACTCCTGCTGCTGTCATACTGCTGCTGCCACCTGTGTCACTCTCTGGGAATCCCTAAACTGTCCTCCTATGCCAAGACAGAGGACAAACTGTTCAAGAACCTCTTCAGAAACTACCAGAAATGGGTGAGGCCTGTGGAATACCTCAACGGCACAGTACGGGTCAGATTTGGACTGGCCATCTCCCAGCTAGTGGACGTGGACGAGAAGAACCAGTTGATGACAACCAATGTGTGGATGAAACAGGAATGGTTGGACATGAAGCTACGCTGGGACCCTGATGACTACCTGGGCATCACTAACATCAGAGTCCCCTCGGACTCCATCTGGATCCCAGACATTGTGCTCTATGACAATGCCGATGGACGTTTTGAGGGCTCTGTCACCAAGGCTGTTGTCAAGTATGATGGCACCATCATCTGGACACAGCCCGCTAACTACAAGTCAGCCTGCATCATCGATGTCACCTTCTTCCCCTTTGACCTGCAGAACTGCTCCATGAAGTTTGGCTCCTGGACCTATGATGGCTCACAGGTTGACATCCTCCTGGAGGACTTCCATGTAGATAAGAGGGACTACTTTGACAATGGTGAATGGGAGATAGTGAAAGCGACAGGCAGCCGTGGTCTGAGGATGGACGGTCCCTGCCACTTCCCCTTCATCACCTACTCCTTTATCATCCGTAGACTGCCGCTCTTCTACACcctcttcctcattatcccctgtATCGGCCTTTCCTTCCTCACCATCCTGGTCTTCTACCTGCCCTCCAACGGCGGGGAGAAGATCTCCCTGTGCACCTCTGTGCTGGTGTCCCTCACCGTCTTCCTGCTCGTGATCGAGGAGATTATTCCGTCCTCCTCCAAGGTCATCCCTCTTATCGGGGAGTACCTGGTGTTCACCATGATCTTTGTCACGCTCTCAATTGTCATCACCGTCTTCGCTATCAACATCCACCACCGCTCCTCATCCACGCACCAAGGCATGGCGCCCTGGGTGCGCCGTATCTTCCTGCACAAGCTGCCTAAGCTGCTGTGTATGCGCAGCCACGTGGACCGCTATGCTACCCCAGGCGGGGCCAGGGAAGGACTGACAGGGAGAGAGTGGGCAGGACTGGCAAGAAGAGAGGGGGTAGTAGGGGGCATTACGAAGGGTTGTTCACCAGAGtccacccctcatctctcctctagGAATAACCTGCAGGCTGCTTTGGATTCTATCCGCTACATCACCATGCATGTGGTCAAGGAGAACGAGGTCAGAGAGgtggtgCAGGACTGGAAGTTTGTGGCTCAAGTTCTGGATCGTGTGTTCCTGTGGACCTTTCTCCTGGTCTCAGTActgggctctgctctgctcttcatCCCTGTCATCTACAAATGGGCAAACATCATCGTCCCCAACCATGCAGGTGGCAGCGGATAAGACTAAACTGAGACTAAGTGCACTGAGCACAATAATTTCAGAGACACTACAGTCAGTGCAGATAAAGAGACACTTACTCACGTGGGTGTGGGAGACCAGTTATAATTGCAATGGATTCTAGTTCCATCATGATTTTTGATTTGTGTAAATTAATGAGGGATTATTGTCTCTATGTTGCTGTATCTGTTTATAGATTAAATTAACAATCAATTGTTTTATATTCTGAAAGGAGGATACCTCCCTATAGGCATATCTCACAAAGTAAAGTATAACAATGAATACAA
>XM_021607232.2
CTGGGGAAGATACCTGATAGTGATTAGTGATCAGACTcttctgggagagagaggggggctggCTTTCtggaggaggttgaggaggaggaggaggcgaaggaggagagagaggagagaaaggggggctGGTTTTCtggaggaggttgaggaggaggaaaaggaggagagagaggagagagagcgtgcTACCGTTCATTTAGAGGCAGCAGCAAGAGACTGAAGCATCGTCTGTCTGAGCTGAGGCAGGGCTGCATGGAATGGAGGAAAACTAGAGAGCAGCGCTGCTTGTCTGTCTGCCGACACACTGTCTGGACTCTCACGCTGCATTCAGGATAGATTGtgtgttgagtggatgatagGAATAGAGGATGCAGGTCTGATGTGCACAGTATGTCTGTTTGTGATCATATGTGAatgggtttgtgtgtgttcacTACATCCAAGCAGGTGAGTGTAATGTGTTCGCATGTACACtgttgtgcatgtgtgtatttgtgaaaTGTGTAagatgaaatgtgtgtgtttgcaaaTGTGCAAATTAGTTTCTATGTGTATGCAGTGCGTATCTGTATccatgtttgtgtgtacatgtaagGTATCTAAACTGATGCATACATATCCCATAACTTCCTCTGTTTGTGcactgtgttgtgctgtgttttcCTAGACTCTAGTTGTGTTGTAGTCATGGCTGCCTGAGGGACTGCTCCCTGGCTGTGTGGATCTGGAGCCCCCTCTGATATCATGCTGAGAGTTGGGCCAGCGGCCACCACTCTACTCCTGCTGCTGTCATACTGCTGCTGCCACCTGTGTCACTCTCTGGGGCCTACACCACCAGGCTGTCATGGATACCAGCATGCCACAGAAGCCAGCTGATGCACTGATACAATGAGGAATCCCTAAACTGTCCTCCTATGCCAAGACAGAGGACAAACTGTTCAAGAACCTCTTCAGAAACTACCAGAAATGGGTGAGGCCTGTGGAATACCTCAACGGCACAGTACGGGTCAGATTTGGACTGGCCATCTCCCAGCTAGTGGACGTGGACGAGAAGAACCAGTTGATGACAACCAATGTGTGGATGAAACAGGAATGGTTGGACATGAAGCTACGCTGGGACCCTGATGACTACCTGGGCATCACTAACATCAGAGTCCCCTCGGACTCCATCTGGATCCCAGACATTGTGCTCTATGACAATGCCGATGGACGTTTTGAGGGCTCTGTCACCAAGGCTGTTGTCAAGTATGATGGCACCATCATCTGGACACAGCCCGCTAACTACAAGTCAGCCTGCATCATCGATGTCACCTTCTTCCCCTTTGACCTGCAGAACTGCTCCATGAAGTTTGGCTCCTGGACCTATGATGGCTCACAGGTTGACATCCTCCTGGAGGACTTCCATGTAGATAAGAGGGACTACTTTGACAATGGTGAATGGGAGATAGTGAAAGCGACAGGCAGCCGTGGTCTGAGGATGGACGGTCCCTGCCACTTCCCCTTCATCACCTACTCCTTTATCATCCGTAGACTGCCGCTCTTCTACACcctcttcctcattatcccctgtATCGGCCTTTCCTTCCTCACCATCCTGGTCTTCTACCTGCCCTCCAACGGCGGGGAGAAGATCTCCCTGTGCACCTCTGTGCTGGTGTCCCTCACCGTCTTCCTGCTCGTGATCGAGGAGATTATTCCGTCCTCCTCCAAGGTCATCCCTCTTATCGGGGAGTACCTGGTGTTCACCATGATCTTTGTCACGCTCTCAATTGTCATCACCGTCTTCGCTATCAACATCCACCACCGCTCCTCATCCACGCACCAAGGCATGGCGCCCTGGGTGCGCCGTATCTTCCTGCACAAGCTGCCTAAGCTGCTGTGTATGCGCAGCCACGTGGACCGCTATGCTACCCCAGGCGGGGCCAGGGAAGGACTGACAGGGAGAGAGTGGGCAGGACTGGCAAGAAGAGAGGGGGTAGTAGGGGGCATTACGAAGGGTTGTTCACCAGAGtccacccctcatctctcctctagGAATAACCTGCAGGCTGCTTTGGATTCTATCCGCTACATCACCATGCATGTGGTCAAGGAGAACGAGGTCAGAGAGgtggtgCAGGACTGGAAGTTTGTGGCTCAAGTTCTGGATCGTGTGTTCCTGTGGACCTTTCTCCTGGTCTCAGTActgggctctgctctgctcttcatCCCTGTCATCTACAAATGGGCAAACATCATCGTCCCCAACCATGCAGGTGGCAGCGGATAAGACTAAACTGAGACTAAGTGCACTGAGCACAATAATTTCAGAGACACTACAGTCAGTGCAGATAAAGAGACACTTACTCACGTGGGTGTGGGAGACCAGTTATAATTGCAATGGATTCTAGTTCCATCATGATTTTTGATTTGTGTAAATTAATGAGGGATTATTGTCTCTATGTTGCTGTATCTGTTTATAGATTAAATTAACAATCAATTGTTTTATATTCTGAAAGGAGGATACCTCCCTATAGGCATATCTCACAAAGTAAAGTATAACAATGAATACAA

Function

NR:

description
neuronal acetylcholine receptor subunit alpha-5-like isoform X1

GO: NA

KEGG:

id description
K04807 CHRNA5; nicotinic acetylcholine receptor alpha-5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980693.1 False 2490 mRNA 0.50 7 64832624 64851098
XM_021607231.2 False 2269 mRNA 0.51 8 64832625 64851098
XM_021607232.2 True 2553 mRNA 0.50 8 64832631 64851098

Neighbor

gene id symbol gene type direction distance location
LOC110526344 LOC106587225 coding upstream 50920 64769099 ~ 64781704 (+)
LOC110526343 LOC106587228 coding upstream 66826 64753029 ~ 64765798 (+)
LOC110526337 LOC106587231 coding upstream 333003 64494819 ~ 64499621 (+)
insyn1 LOC106587233 coding upstream 554869 64218174 ~ 64277755 (+)
LOC110526331 LOC106587235 coding upstream 800332 64026685 ~ 64032292 (+)
LOC110526346 NA coding downstream 3878 64854976 ~ 64858185 (+)
LOC118936302 NA coding downstream 30624 64881722 ~ 64884136 (+)
LOC110526348 NA coding downstream 40588 64891686 ~ 64895115 (+)
LOC110526349 LOC106587217 coding downstream 48703 64899801 ~ 64962147 (+)
LOC110526353 dhdh coding downstream 252126 65103224 ~ 65106320 (+)
G534449 NA non-coding upstream 27761 64785620 ~ 64804863 (+)
G534445 NA non-coding upstream 58610 64773647 ~ 64774014 (+)
G534130 NA non-coding upstream 72119 64760234 ~ 64760505 (+)
G534509 NA non-coding downstream 105432 64956530 ~ 64957769 (+)
G534510 NA non-coding downstream 111341 64962439 ~ 64964242 (+)
G534530 NA non-coding downstream 113204 64964302 ~ 64964542 (+)
G534532 NA non-coding downstream 116699 64967797 ~ 64968004 (+)
LOC110526356 LOC106587213 non-coding downstream 214282 65065380 ~ 65178884 (+)
G532489 NA other upstream 1488869 63308533 ~ 63343755 (+)
LOC100750227 LOC106587244 other upstream 1493126 63338236 ~ 63549030 (+)
G532237 LOC106591742 other upstream 1633890 63032931 ~ 63198734 (+)
LOC110526311 LOC106587159 other upstream 1817638 63005672 ~ 63068991 (+)
G534653 NA other downstream 262182 65113280 ~ 65169563 (+)
G535150 LOC106587155 other downstream 996525 65847623 ~ 65849441 (+)
G536406 NA other downstream 1751687 66602785 ~ 66604053 (+)
G536995 zfhx3 other downstream 2162122 67013220 ~ 67018653 (+)

Expression


Co-expression Network