LOC110526350 (LOC106562128)


Basic Information

Item Value
gene id LOC110526350
gene name LOC106562128
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 64958215 ~ 64973767 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473933.2
cacaatatACGTGACTCATGACTTTCTGATATTCCCGCGCTCATCAAGCAAAACAAacgtagctaactagctagcgttAGCTCCTCTTATAAATATATATCTTATAttcttaaatattttatttttttacaaatgacaACTGTAACGTTACATAAATCTATATGGAGGTTGAAACTTTTTGGGGCGTTTTTTTGCCTGGGACCAAAGAAGACGACGGTAATCCATGGAAGATGTTTGAGCCCAGTGAAAGCGCGGGTGAATTGGTGCTCACCATTGTGGAATCCGGTCATATGTTGGTGTCCCAAGGTCACGATCTTCTGGATGGGTTTTCCTTGCTTGATGCTCCAAGCTTCCTCAAAGTTCAGCAGAAATCAGATACCCTACTTTTCCGTCTGACTGTTAAGGGGGAGAGTTGTTCGATCGGGATGCAGTTCAGTGGCAGCAGGGCTGAGGCCCTGGAGGAGCGTGGCAGTGCAGTACTCAGACTGAAGGAGTACCTGCCTGTCACCACACAGGGGgggccaccaccaccactcagcTGCACCCCAACATCCAATCAGCCCCCTACCAAGACCACTGCACAGGATCAACAGGCGAGTGCTGGGGAGGCTATGGCTACTGAACCGGAGGTCGTCCAGGGCTCTTTATCCATCAAACGTCTTACCCAGCACTTCCTGGGCGAGCATGGTCTGTCCTTGCCCCTGGTGTCCTTGCCCCTGGTGCCACAGTGCTCTGTTCTGTGGGGAGCTGGAGCCCTTCCTCCGCCTGTGTCTCTTGGACCCCAGCTTCCCTGCcttggtggaggaggtggaagggGAGCTGAAGAAAGTGCTCCAGGACTGAGGAGCTAAAGCTCATCAACACAAACAGCCAGAGGGAGACAGGTCAACTCACTACACACGggactcctgagagaACCTGCAAGCCAGActgtcgtcttgtgaaacagtggatgtaaagaatctagctagctaaagcatttactgcaaattcaATGTACAATTGTGTTAGCTTGCCTTGCTTATATTTGCcatgcaatgcagctgaagtaacatagcgAGCTAACTatttgcttattgtgtagtggaagATGAAAATAACTGTATTCCTATgaatgtgtagctagctacagtatgtagccgatctgtgtatggacccttaAAAggttaggttctgaactaatattcataccaatgaacctcagctatcatagttgtatcaacttcaagtctgaatggcattaatgaagcctatggattgagtagaatataataactttattgtgccaaggatgcaagtcctatatacatgtactgttattaccatgcatgagatccccacattgtagcctgtacattgactatattcactgatcatgtacacttccttggcaaataaaggtgcggtt
>XM_021607246.2
GGTTGAAACTTTTTGGGGCGTTTTTTTGCCTGGGACCAAAGAAGACGACGGTAATCCATGGAAGGTGACGTGAAGTTGTCTAGTCGTGAATTTTGTCCAACAACGTCGGTCTTTATATGAGATAACGCTAGCCAAAGTTAGATGTTTGAGCCCAGTGAAAGCGCGGGTGAATTGGTGCTCACCATTGTGGAATCCGGTCATATGTTGGTGTCCCAAGGTCACGATCTTCTGGATGGGTTTTCCTTGCTTGATGCTCCAAGCTTCCTCAAAGTTCAGCAGAAATCAGATACCCTACTTTTCCGTCTGACTGTTAAGGGGGAGAGTTGTTCGATCGGGATGCAGTTCAGTGGCAGCAGGGCTGAGGCCCTGGAGGAGCGTGGCAGTGCAGTACTCAGACTGAAGGAGTACCTGCCTGTCACCACACAGGGGgggccaccaccaccactcagcTGCACCCCAACATCCAATCAGCCCCCTACCAAGACCACTGCACAGGATCAACAGGCGAGTGCTGGGGAGGCTATGGCTACTGAACCGGAGGTCGTCCAGGGCTCTTTATCCATCAAACGTCTTACCCAGCACTTCCTGGGCGAGCATGGTCTGTCCTTGCCCCTGGTGTCCTTGCCCCTGGTGCCACAGTGCTCTGTTCTGTGGGGAGCTGGAGCCCTTCCTCCGCCTGTGTCTCTTGGACCCCAGCTTCCCTGCcttggtggaggaggtggaagggGAGCTGAAGAAAGTGCTCCAGGACTGAGGAGCTAAAGCTCATCAACACAAACAGCCAGAGGGAGACAGGTCAACTCACTACACACGGTACACATGTGGGTGGGAGGTGGGTTGTGGAAGAGTTGGGGAATGTGTtgtttagaggtcgaccgattaatcggaatggccgatttaattagggcacatttcaagttttcataacaatcagaaatctgtatttttggacaccgatttggccaattttatttttaaaataaatg
>XM_021607245.2
cacaatatACGTGACTCATGACTTTCTGATATTCCCGCGCTCATCAAGCAAAACAAacgtagctaactagctagcgttAGCTCCTCTTATAAATATATATCTTATAttcttaaatattttatttttttacaaatgacaACTGTAACGTTACATAAATCTATATGGAGGTTGAAACTTTTTGGGGCGTTTTTTTGCCTGGGACCAAAGAAGACGACGGTAATCCATGGAAGATGTTTGAGCCCAGTGAAAGCGCGGGTGAATTGGTGCTCACCATTGTGGAATCCGGTCATATGTTGGTGTCCCAAGGTCACGATCTTCTGGATGGGTTTTCCTTGCTTGATGCTCCAAGCTTCCTCAAAGTTCAGCAGAAATCAGATACCCTACTTTTCCGTCTGACTGTTAAGGGGGAGAGTTGTTCGATCGGGATGCAGTTCAGTGGCAGCAGGGCTGAGGCCCTGGAGGAGCGTGGCAGTGCAGTACTCAGACTGAAGGAGTACCTGCCTGTCACCACACAGGGGgggccaccaccaccactcagcTGCACCCCAACATCCAATCAGCCCCCTACCAAGACCACTGCACAGGATCAACAGGCGAGTGCTGGGGAGGCTATGGCTACTGAACCGGAGGTCGTCCAGGGCTCTTTATCCATCAAACGTCTTACCCAGCACTTCCTGGGCGAGCATGGTCTGTCCTTGCCCCTGGTGTCCTTGCCCCTGGTGCCACAGTGCTCTGTTCTGTGGGGAGCTGGAGCCCTTCCTCCGCCTGTGTCTCTTGGACCCCAGCTTCCCTGCcttggtggaggaggtggaagggGAGCTGAAGAAAGTGCTCCAGGACTGAGGAGCTAAAGCTCATCAACACAAACAGCCAGAGGGAGACAGGTCAACTCACTACACACGGTACACATGTGGGTGGGAGGTGGGTTGTGGAAGAGTTGGGGAATGTGTtgtttagaggtcgaccgattaatcggaatggccgatttaattagggcacatttcaagttttcataacaatcagaaatctgtatttttggacaccgatttggccaattttatttttaaaataaatg

Function

NR:

description
meiotic recombination protein REC114-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473933.2 False 1408 mRNA 0.47 7 64958215 64973767
XM_021607246.2 False 986 mRNA 0.52 6 64963833 64973601
XM_021607245.2 True 1075 mRNA 0.49 6 64963833 64973767

Neighbor

gene id symbol gene type direction distance location
LOC118965085 LOC106587172 coding downstream 59667 64897435 ~ 64898548 (-)
LOC110526341 LOC106562136 coding downstream 243101 64697204 ~ 64715114 (-)
LOC110526338 LOC106587230 coding downstream 315581 64509743 ~ 64642634 (-)
LOC110526336 LOC106562141 coding downstream 465350 64417864 ~ 64492865 (-)
LOC110526332 LOC106562143 coding downstream 873328 64049445 ~ 64084887 (-)
LOC110526352 LOC106587214 coding upstream 139511 65113278 ~ 65133825 (-)
LOC110526361 LOC106587207 coding upstream 551905 65525672 ~ 65546448 (-)
LOC110526365 LOC106587205 coding upstream 626330 65600097 ~ 65765382 (-)
LOC110526369 xlkd1 coding upstream 819052 65792819 ~ 65795668 (-)
LOC110526367 LOC106587202 coding upstream 824306 65798073 ~ 65820337 (-)
G534626 NA non-coding downstream 3255 64953520 ~ 64954960 (-)
G534603 NA non-coding downstream 63116 64855495 ~ 64895099 (-)
G534612 NA non-coding downstream 77611 64876906 ~ 64880604 (-)
G534559 NA non-coding downstream 116433 64795566 ~ 64841782 (-)
G534537 NA non-coding downstream 148627 64768414 ~ 64809588 (-)
G534651 NA non-coding upstream 4060 64977827 ~ 64978126 (-)
G534652 NA non-coding upstream 4371 64978138 ~ 64978443 (-)
G535431 LOC106562126 non-coding upstream 6243 64980010 ~ 64980314 (-)
G535528 NA non-coding upstream 166142 65139909 ~ 65141886 (-)
G535535 NA non-coding upstream 185433 65159200 ~ 65161324 (-)
G534349 NA other downstream 343419 64578798 ~ 64614796 (-)
G534201 NA other downstream 458601 64498453 ~ 64499614 (-)
igdcc3 LOC106562146 other downstream 1132690 63823887 ~ 63944930 (-)
LOC110526310 LOC106587159 other downstream 1967937 62985486 ~ 62991995 (-)
G536183 NA other upstream 1288719 66262486 ~ 66276289 (-)
LOC110526379 LOC106587193 other upstream 1303435 66277162 ~ 66326558 (-)
LOC110526387 LOC106587187 other upstream 1526621 66499996 ~ 66505055 (-)
G536630 LOC106562092 other upstream 1575600 66549367 ~ 66549974 (-)

Expression


Co-expression Network