LOC110526358 (LOC106587209)


Basic Information

Item Value
gene id LOC110526358
gene name LOC106587209
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65403608 ~ 65407275 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980718.1
TTGTGAAGCAGCTCCTGTCCCTTACGTCTCTTTGTGGGGAAACAGAGGGCACACTTCCTAGAGCATAactggagacagagacacagagttcCAGGCAGGACGCCCAGGGTTCCAGCCTACAGCCACTCCTGGCACAGCCCTGAGGGGGACAGCTCCCACAGAGCACCTTGGCCAAGAGGTCCACGAAAGGAGAAGAGACGCTAATCAACTGGACCGTCCCAGAAAGTGAGATGAGAGTTGATGATATGAATGATGTGAATCCAACTGATCAATGTGGGATCTGAACCCTAAGTGAGAGGTGTATTGAGTGTGTTGTATAAAGTAGCAGTTCTCTTGAAAAGTTAGACTGAAGCATCGAAGTATCCAGGTTACAAGGATAAAAGCTCATCgagagaaaacaagagaaagGACACTTCAGCTGAGAATGTATGCATTTTCAAGGTTCTTTTTTACGTCTTGAATTGTCCCATTTGTATTCTTAATTCACCACCCAGCGTTTATCTTATTTTTGCAGCTGTCTGTAAAGCAGCATGAAAAGACTCCATTGAAAGCACTTTCTGCAAGCCGGATAATATTCCTTTCTAAAGCCTTGAAACTTTCGCAGACGTCTACAGAAAAAAGAAACCTATAACGAGAATAAGAAAACAATGCTGTGCTGGATCCCATATGAGTACGAGTCGCTGACTGGACTTTTATGATTGGAGAAGATCCAGGAGTGAAGAGATGTATTCCGACTGTGGAGTTGGAGTGGCCAGCATTCAAAGACAGTATCAGGTCAGGGACTCTGTCAGACCATACACCGGACCTGGAGGGAATACACAGGTCCCAATGGAAACCGGTGTGACCCCAGCTAGGTGCCCAATATATCAGGTTCAGCCTTACAGTGGGCAGCCCTCCTGCACTGTCAACAGTGTTTCCAACACACAGCACACTCCGGTGCCTACACATCTAACTCCACCTCCCGCCGCACTTAAACCGGGCCAGGATGGGTTCAAGAAGGTGTGTCGCACAGAGGAGGCCAGCCCGTGCCCCTTCCCAGGATTGGCCTCAGGAGTGCTGGAGATGCGTGTCAAGGAGGGCAGTAAGATCCGTAACCTCATGGGTTTTGCCATGGCTCGCATGCAGGGGGATGTCAGTGGTGTTGGGGTTAGTGGAGGCGGTGGCCTGAGGCAGGTTGTTTTCTCTGGGTCAGGTCGTGCCGTCACCAAGACCATCACATGCGCTGAGATCATGAAGAGAAAAGTGGGGTCTCTGCACCAGCTGACCAAGCTGCGCTACAAGGGTGTGAGGGAGGTGTGGGAGAGCAAAGAAGGGGGGGCATCGGAGATGACTGTTCACAGGACCGTCCCCTCCATCAGCATCCTTTTGTCCAAAGACCCCCTGGACCCGCAGGAGCCCGGCTACCAGCCCCCTGAGACCCTCAGTGCTCTCTGGGAGGACAGAGACGGTGTGGATGCCCTACAGACAGCCAGCAAGAGACCTCTTGGTCTGTCCCCATACAGTAGTTTCCCTGACTCTAAGAGAGTGTGTCTGAGTCTGGACGAGGGGACTCTGGCTCTGTCCACCCccctggctaactgactgactgaactggtATCAAACAGTCGAGTGGGAAGGATCAGAGGAGTTCATTCTGCACTGCCCTCCACTCAAGCACAGTGCTGAAACAATCAGAACATTCACTCAGACAGAACCGTGCTTTCTGAGGAGAACTGAGCACCATGCCCACCCCATCCTCCAGAGGTCAGTCAAAATAGGACCTGAAAGCTTGTCTTTGTAGATAAAACATTTATTGAACCCATTTCTCAGCACAATCAATCATTCGCCTTTGTGCCCAGAAATACTTAATGTCATCATACTATATGTCACACTGTAAAAGCTTAGACATGACAGCACACTAATCACATTTTAAATCatcaacacaacaaaacacagagcGACCAATCACCCAAGATCCCAGATTTCTGCTTTCAGTAGACTGACAATACGTTTTGAACATTGTCGTTCTGTTTTCCTAATTATATCCTACAACTGCAAATCTGTTCAAATGCACAAGGTAGGTCCACAATATTGTAATGAATACACAGAATATCTACACTCCCCTACGTATATATTTGGACAGGGAAGCTAGCATGTTTCATTTGGCTCTACAcgccagcattttggatttgagatcaaatgtttcatatgatgCAACAATAGAGTATGTCAccttttaatttgagggtattttcatacatatccgttctaccatttagaaatgaatgcactttatgcatctagtccccccatttgaaggtgtcataagtgTTTTAACAAAGGCACTTACAATAGTCTACATTttatacactataacacaataagtgaatttgtccaaatacttatggcaccttcaaatggggggacaaTATACATAAAACGCATTCATTTCTAAACTATCCATAATATGACAAATGTATCATGTTTTCAAATATCCAAACATTCAAATAAACTATATGCAGGAAAAGCCTTTTTTTGTGTATTTCTATCCCTCAGACTTGCCTATAGTACTGTACAAAGTCCAGATTGAAAAGGAAATCACAGCATGCTGATGTGTTGATAAGAGTAACGGGAGTGAAATTTGTCTAAGAGACAGCTGATTTAATGACATGGCCCCCGATAAGACGCAGCTCCAGAACCAAGCAGCCTGACAGATGCTGGGGGCTGAAATACAGGGACAGATTATCATTAAGATTACAACACTACATTGCGGCACACTAGAGAAAAGGATCAAAACTAGGCTTGATATAACTAAACACAGTCAGTGTCCCACCAGAACATGAAACCATAGCAGCAGACTCAACTCCATACCATTACTACAGTGCTAGGGTTCACGTAGAGGATATTGTATGCAGTGTttgggagtagtgaactacatgtaatTCAACAAGTAATTTCATTACATTTGTTAGTGGAACTCAATTCAAatcttggtagtgttttcagtagttaattaccTTTTAGAGGTGTAGCTAACGAACTACACACAAAGAAAATATTGGTGAAGTAGGCAAGAATTTCCTCTCTTTTACggcatcagacctgcctaattctcacttgtAACAGTTTTTGTGTTgaataggctaaattacacatgATGTTAAATACGATCTTTGGgtatttgcaaaacattttggaaccGTATCAACAGTGggctaatgaaacaaataccaaaatatcatTTTTGAGAGGTATTTTTCTTTAACATCGGACTCCAGAGTGATATGTTATTGCAATTTGTAGTATGACATTTCAGATATGATCATTTAGTTTGGATGTTTTAAAAAAGATAACTTTAGATTCATTCCACCTTAAAAAAGCATAAGAAACACGATTGATCATTTATTTTCATCATGAGCAAAAGCTATTGGTTTTCTacccaaagttgcaaagaaaatgtttatttaaacaaGCAAAATGGATAAAAGGGTGTGGCGGCAGTAGCAGGAACAGTGGCATCTAGTGGGCAAAACGTGGTATTTTCACACTAGCTTATAGTAAATAACGCAAGCGACTTCAATGGCTAATtacgtagctcattcacagccatataaggagtcattggcatgaggcggttttaaaaaatgcggcacttcctgattggatttttatctgggtttcgcctgtaa

Function

NR:

description
uncharacterized protein LOC110526358

GO: NA

KEGG:

id description
K14525 RPP25; ribonucleases P/MRP protein subunit RPP25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980718.1 True 3668 mRNA 0.44 1 65403608 65407275

Neighbor

gene id symbol gene type direction distance location
LOC110526357 LOC106587212 coding upstream 35031 65193659 ~ 65368577 (+)
LOC110526356 LOC106587213 coding upstream 224724 65065380 ~ 65178884 (+)
dhdh.2 LOC106587215 coding upstream 290537 65106709 ~ 65113071 (+)
LOC110526353 dhdh coding upstream 297288 65103224 ~ 65106320 (+)
LOC110526349 LOC106587217 coding upstream 441461 64899801 ~ 64962147 (+)
LOC110526359 LOC106587211 coding downstream 7014 65414289 ~ 65430400 (+)
LOC110526360 LOC106587210 coding downstream 27136 65434411 ~ 65440976 (+)
LOC110526363 LOC106587208 coding downstream 33817 65441092 ~ 65521598 (+)
LOC110526364 LOC106587206 coding downstream 167794 65575069 ~ 65580465 (+)
LOC110526366 LOC106587204 coding downstream 361508 65768783 ~ 65771390 (+)
G534870 NA non-coding upstream 27227 65375571 ~ 65376381 (+)
G534866 NA non-coding upstream 33325 65370016 ~ 65370283 (+)
G534799 NA non-coding upstream 172951 65229426 ~ 65230657 (+)
G534798 NA non-coding upstream 174783 65228104 ~ 65228825 (+)
G534894 NA non-coding downstream 5097 65412372 ~ 65412985 (+)
G534920 NA non-coding downstream 42217 65449492 ~ 65449693 (+)
G534921 NA non-coding downstream 42500 65449775 ~ 65450022 (+)
G534982 NA non-coding downstream 176997 65584272 ~ 65584519 (+)
G534653 NA other upstream 285652 65113280 ~ 65169563 (+)
G534453 NA other upstream 556504 64790322 ~ 64847104 (+)
LOC110526344 LOC106587225 other upstream 627272 64769099 ~ 64781704 (+)
LOC100750227 LOC106587244 other upstream 2064110 63338236 ~ 63549030 (+)
G535150 LOC106587155 other downstream 440348 65847623 ~ 65849441 (+)
G536406 NA other downstream 1195510 66602785 ~ 66604053 (+)
G536995 zfhx3 other downstream 1605945 67013220 ~ 67018653 (+)
G537029 zfhx3 other downstream 1697031 67104306 ~ 67104908 (+)
G537032 LOC106587324 other downstream 1702401 67109676 ~ 67110628 (+)

Expression


Co-expression Network