LOC110526359 (LOC106587211)


Basic Information

Item Value
gene id LOC110526359
gene name LOC106587211
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65414289 ~ 65430400 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607264.2
AAAGCCCCAGTTATCAGTGGGTAATGTAGCCTCGCAGTTTATTTACTGCGTTAGGCAGGTTAACACTGCTATGGGAGTGTGTATTTACAGCAATTAtgttgtaacgaccctgggttgaATGTATTACCTGAAGGTGTATGTTCATTGTATGCATTTATTTCCAAATGGCAGTTGTTGATAAGACCACCAAAGGTGAGGCTAACAGCCTACCTCGCGCGGTTGTCTCCTAGCACGTAGGCCCTGCGGTTTTGCGCAGACGCAATTGCTTCCCTTTTCGATGTCCCTCTGACTCGGTTCCTTAGCATACGACACCGTTAGCCACTAATTCTCACCGGTCGGCAAGATGTTCAGACCTGTTGTTCGACTTTCAACCTCTGGGGTACGGAGTTTAACGCGGACACGACCATGCTACTCGGCTCCTTTGGCCTCCCGATGCTACTCCCATGCCAAGGTGGAGACAGATGAGGAGTTTGATGCCCGTTGGGTCACTTATTTCAGCAAGCCAGACATTGATGCCTGGGAGCTGAAGAAAGGCATGAACACACTAATTGGCTATGACCTGGTACCTGAACCCAAAATCCTCGACTCAGCTCTTCGTGCTTGCCGAAGGTTGAATGACTTGGCCAGTGCTATCCGCATCCTCGAGGCAGTCAAGGACAAATCTGGTCCCCACAAAGATATCTACCCATACCTGATTCAAGAACTGCAGCCCACTCTGATTGAGCTGGGTATCTCCACACCTGAGGATCTGGGCATGGACATATTATAGACATCCTCTGGGTCATCTGGTGTCCAACAAGATGAACCACTTCTCTTCAAGTCTCTGCCTTGTCCTGGTGTCTGTTGATTTAATCCACACTCTCCTGTTGTGAATAAAATTATGAATTTAATAAAGAAATATCTATTGAT

Function

NR:

description
Cytochrome c oxidase subunit 5A, mitochondrial precursor

GO: NA

KEGG:

id description
K02264 COX5A; cytochrome c oxidase subunit 5a

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607264.2 True 909 mRNA 0.48 5 65414289 65430400

Neighbor

gene id symbol gene type direction distance location
LOC110526358 LOC106587209 coding upstream 7014 65403608 ~ 65407275 (+)
LOC110526357 LOC106587212 coding upstream 45712 65193659 ~ 65368577 (+)
LOC110526356 LOC106587213 coding upstream 235405 65065380 ~ 65178884 (+)
dhdh.2 LOC106587215 coding upstream 301218 65106709 ~ 65113071 (+)
LOC110526353 dhdh coding upstream 307969 65103224 ~ 65106320 (+)
LOC110526360 LOC106587210 coding downstream 4011 65434411 ~ 65440976 (+)
LOC110526363 LOC106587208 coding downstream 10692 65441092 ~ 65521598 (+)
LOC110526364 LOC106587206 coding downstream 144669 65575069 ~ 65580465 (+)
LOC110526366 LOC106587204 coding downstream 338383 65768783 ~ 65771390 (+)
LOC110526368 LOC106587203 coding downstream 344387 65774787 ~ 65792680 (+)
G534894 NA non-coding upstream 1304 65412372 ~ 65412985 (+)
G534870 NA non-coding upstream 37908 65375571 ~ 65376381 (+)
G534866 NA non-coding upstream 44006 65370016 ~ 65370283 (+)
G534799 NA non-coding upstream 183632 65229426 ~ 65230657 (+)
G534920 NA non-coding downstream 19092 65449492 ~ 65449693 (+)
G534921 NA non-coding downstream 19375 65449775 ~ 65450022 (+)
G534982 NA non-coding downstream 153872 65584272 ~ 65584519 (+)
G534984 NA non-coding downstream 155795 65586195 ~ 65586907 (+)
G534653 NA other upstream 296333 65113280 ~ 65169563 (+)
G534453 NA other upstream 567185 64790322 ~ 64847104 (+)
LOC110526344 LOC106587225 other upstream 637953 64769099 ~ 64781704 (+)
LOC100750227 LOC106587244 other upstream 2074791 63338236 ~ 63549030 (+)
G535150 LOC106587155 other downstream 417223 65847623 ~ 65849441 (+)
G536406 NA other downstream 1172385 66602785 ~ 66604053 (+)
G536995 zfhx3 other downstream 1582820 67013220 ~ 67018653 (+)
G537029 zfhx3 other downstream 1673906 67104306 ~ 67104908 (+)
G537032 LOC106587324 other downstream 1679276 67109676 ~ 67110628 (+)

Expression


Co-expression Network