LOC110526360 (LOC106587210)


Basic Information

Item Value
gene id LOC110526360
gene name LOC106587210
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65434411 ~ 65440976 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607265.2
GGTAGGGATGAAGGAAGGACGGTGAAAGTAGTCTAAGGCTTCTGTTGACAGGAAGCGGAAGTGGTCCTTAGACTAGCTAGCAGGAGTAAAAGACAGCAGCGATAAGACGTCCTTTCGTGGATAGTTGGAAATACAGTCAACATGCCTGTTTTAGCGTATAAAGCGTGAACATTCCCACCAACATGAACAACACTATGGAGGAACAGGAGAGGGATACTCTCCTTGCTGCAGTCCCCGAGTCCCAAGTTTTGACGCCGGGTCCTGGCACTGGCAGCAGCTCAAGACCAAGGGCTACAGATGGGGGCATCAGACCTTTGGAGAAGAGGGGACCCTACATCATGTCCAAAGCCTCAGCCATTCACATGAAACTACagaaacacagagaaatgGCCCGCAAAGCAATGAAGAAAAATGGCCTTACCTCAGGGGGTCCAGTCATGCAACAGCCCAGGCAAGGAGGAAagagAAGTGTGAAGTTCAACAAAGGTTATGCCGCTTTGACTCAGCACGCTGAAGATACACTGGTAGCATTGGAATCAGACAGTGATGATGAGCTAGATGTTGAGCAGTATTCCTCAGGATACTCTTCAGCTGAGGTGCACCCAGACCTGAGCAGGCAGCTGCTGCAGGATGGATACCGGCTGGATGAGATCCCTGACGACGAGGACCTGGACCTCATTCCCCCTAAAGCCATGGGTTCCTCAGCCTGCTGCTGCGCTGAGGACCCGTCGTGCTCCGTGCAGTGAGGAGGGCACTTAGTGCTGTGACCTGGCTGACCCTGCAGCTCTGTGTTTAAAGACTGGACCTCTGTTACCCTGACCTTAGCCACTGTTTAAGTCGAGCAAGGCCTCCCGTTACCCAAACCCTACCACTGTCTAAGCATGGAACCCCCCTAACACTTTAAATGGCTAGCCACTGTTTTTGCAGTGCTCTCTACACCCTAACTAACCTTAAGCATGGACTGAAGTCATCCAAAGCCTTAGCCACTGTCCAAGCAGGGCTCTCTGTCACCCCAAAGGTTGACCTCTGTGTTATTTTGGAACTAGATTAAATGCTAACCACGTTGCATCCCCTCTCAATAGACAGGTGCAGGGTGATTCATCTCTAGACATGCACTACACTCATTCACCTGATGGAGAAGGTCACTGTCTTGTTGTCCTCTTTGACATATCACTCCCAGGTCTATTTAAACATATAACATTTATATGCAAGGTAATATGCATACAGCAAATGTCCTAGAGCGGTTTGAAGGCTAAAGCTTTTTCTGCAAGCTTGTCTTGCTCCAATTCACTTTTTTTCAAAGTAAGCCCTTTGAAAACAAACCTGAACATTCCATAACTATAGCTTCATTGATTTGGAATTTTTAATCCATCTTCCTAAAATTCCCTGTTTTTGTTGTAAATCCCTGGTATTAATCTTGGGTCTAACCTCAGACCCTTAGGTGTCTTTGACACTACATGGTTTACTTGTATATGAATTAATGCTTTAAAAGATATAGGGATACTAGCACTTACTCTTATGTCAGGCTGCCTACCAATGCTTTGTCCCAAAAAAGTTATGTAAAAGGGTTACAAAATGGCACTGTTTACTGTAATGTTACAGCAATGAGAACTCTGGTCAATCTTGTCCTGCGTGTTAGAAGTAACATTACAGCCCATGGTGTCACTGAGGTTAACCACTACCTCCTGACAATGCTgtacacaacaacacaataaccCACTTGATCCTCTCTGTCTACTATGTATAGTAGTTACTAGATACTCAGAGGGACATGCATATGATATCAGAAGGCGATCTAAACAGACAAGCCTGTTACATTTTGATAATTCGCTCTCTCTCGCATGTCACTCAGCAAATTGTACAGTTTCCCACCCTAATGTTAGTGTTTTGGTATCTTCTGGTTTTAAAAGCAAGCAGTACATTGAGTACACTAAACATTTTGAAGAATTCTGTCTGTGTTGTCAAGCATTAGAATGGGTGATTCTCATCACTCAAGCCCTTACATGTGTGGCTAAAGATAAGTGTGTTTGCTAGTGCAGACCTAATGTGGAAGTGTGTGTTGgtctggctgcgtttacacaagcgacccaattctgatatttttcactaattggtctttgaccaatcacatcagcttTGAAAAAGAGCTGACTGGAGAGATCTGGcatgattggtcaaaagaccaatttagtagaaagaatatcagaattgggctgcctgtttaAACGCAGCCATTGAGTGCTTGACCTGTGTCACTAGAGATCACTAAGATAAATATTGGATTCATCACCATCCGGTGCAGTCAGTAGCCAGTACACTGCACTAGCCTGTACTAGCCTGTACTATGCAACTAATGGGACAATCTGCTTCCTTATCCTAGTTAAAACAATATACCAAGTGTTACTGAGTGCTAAATGCATTAACTTGAAATATTATTATGTAAAGGGAACActatttttatttgattataaATATTGTTTTTGCTATATTCAATATAATTAATTAATATACACATGTCCTTTTGTAATTTTCTTCTGGTTTGCTGGAGGGGATGTTACACCATTGAAAGTTATTCTCACAGAATTCAGAGAGCTACCAATCTAATCTCTGTCAAATATTTGTTAAAATGTTCGCTACCTCGCTCCTGTGCTACAAATAAATATTTGTTATGTAGAAGA
>TU605703
TGGATTCATCACCATCCGGTGCAGTCAGTAGCCAGTACACTGCACTAGCCTGTACTAGCCTGTACTATGCAACTAATGGGACAATCTGCTTCCTTATCCTAGTTAAAACAATATACCAAGTGTTACTGAGTGCTAAATGCATTAACTTGAAATATTATTATGTAAAGGGAACActatttttatttgattataaATATTGTTTTTGCTATATTCAATATAATTAATTAATATACACATGTCCTTTTGTAATTTTCTTCTGGTTTGCTGGAGGGGATGTTACACCATTGAAAGTTATTCTCACAGAATTCAGAGAGCTACCAATCTAATCTCTGTCAAATATTTGTTAAAATGTTCGCTACCTCGCTCCTGTGCTACAAATAAATATTTGTTATGTAGAAGAGTTTGGATGTACAGCGTTGAGGAAGCAGAATATGTTTATGTTGTTCTGGTATATTacgggtcggcaggtagcctagag
>TU605704
TGGATTCATCACCATCCGGTGCAGTCAGTAGCCAGTACACTGCACTAGCCTGTACTAGCCTGTACTATGCAACTAATGGGACAATCTGCTTCCTTATCCTAGTTAAAACAATATACCAAGTGTTACTGAGTGCTAAATGCATTAACTTGAAATATTATTATGTAAAGGGAACActatttttatttgattataaATATTGTTTTTGCTATATTCAATATAATTAATTAATATACACATGTCCTTTTGTAATTTTCTTCTGGTTTGCTGGAGGGGATGTTACACCATTGAAAGTTATTCTCACAGAATTCAGAGAGCTACCAATCTAATCTCTGTCAAATATTTGTTAAAATGTTCGCTACCTCGCTCCTGTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607265.2 False 2678 mRNA 0.43 6 65434411 65440898
TU605703 False 478 lncRNA 0.35 1 65440499 65440976
TU605704 True 371 lncRNA 0.35 1 65440499 65440869

Neighbor

gene id symbol gene type direction distance location
LOC110526359 LOC106587211 coding upstream 4011 65414289 ~ 65430400 (+)
LOC110526358 LOC106587209 coding upstream 27136 65403608 ~ 65407275 (+)
LOC110526357 LOC106587212 coding upstream 65834 65193659 ~ 65368577 (+)
LOC110526356 LOC106587213 coding upstream 255527 65065380 ~ 65178884 (+)
dhdh.2 LOC106587215 coding upstream 321340 65106709 ~ 65113071 (+)
LOC110526363 LOC106587208 coding downstream 194 65441092 ~ 65521598 (+)
LOC110526364 LOC106587206 coding downstream 134171 65575069 ~ 65580465 (+)
LOC110526366 LOC106587204 coding downstream 327885 65768783 ~ 65771390 (+)
LOC110526368 LOC106587203 coding downstream 333889 65774787 ~ 65792680 (+)
LOC110526370 LOC106562103 coding downstream 392861 65833759 ~ 65843569 (+)
G534894 NA non-coding upstream 21426 65412372 ~ 65412985 (+)
G534870 NA non-coding upstream 58030 65375571 ~ 65376381 (+)
G534866 NA non-coding upstream 64128 65370016 ~ 65370283 (+)
G534799 NA non-coding upstream 203754 65229426 ~ 65230657 (+)
G534920 NA non-coding downstream 8594 65449492 ~ 65449693 (+)
G534921 NA non-coding downstream 8877 65449775 ~ 65450022 (+)
G534982 NA non-coding downstream 143374 65584272 ~ 65584519 (+)
G534984 NA non-coding downstream 145297 65586195 ~ 65586907 (+)
G535020 NA non-coding downstream 194760 65635658 ~ 65642430 (+)
G534653 NA other upstream 316455 65113280 ~ 65169563 (+)
G534453 NA other upstream 587307 64790322 ~ 64847104 (+)
LOC110526344 LOC106587225 other upstream 658075 64769099 ~ 64781704 (+)
LOC100750227 LOC106587244 other upstream 2094913 63338236 ~ 63549030 (+)
G535150 LOC106587155 other downstream 406725 65847623 ~ 65849441 (+)
G536406 NA other downstream 1161887 66602785 ~ 66604053 (+)
G536995 zfhx3 other downstream 1572322 67013220 ~ 67018653 (+)
G537029 zfhx3 other downstream 1663408 67104306 ~ 67104908 (+)
G537032 LOC106587324 other downstream 1668778 67109676 ~ 67110628 (+)

Expression


Co-expression Network