LOC110526361 (LOC106587207)


Basic Information

Item Value
gene id LOC110526361
gene name LOC106587207
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65525672 ~ 65546448 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607266.2
ATGTTTTAAACCTGGGTCGGAAGAGAGAGGCTACTGTTTAGCCTAGACTAGTCTCGCCTTCTCTGAATTTAGACTACGTACATGCTTTGCGTGACGGAAGAGACTATATCAAGTGCGTGGTCTATCCAAAAAATATTACTGAGTGGAGTCTGTCTCACTAACGAACAATTAAGCTACTTTTAGGCTACTGTACTTGATTGAAGACAATACTAAATGGAAGACCAGACTGTAAAGACCTCACCCTCGTGTTATATGCTAAAATAACGCTACTACAGTTTCAAGTAATTAATTGCCGAGAACCAAGACTCAAAAAAGCATGAGTCTACTCGCGCTCTTTGCAGTCTTTTTAGGACTATTTTTTCCGGTGAAAGCTTCGGACGTTTCCCACAAACCTAGAGTGACATTGACAGACAAAGATGTGAGCTTCCTAAGAATCCACCTGTCTGGGAATAACAGCCGTATAGAGCTCTTGCACGGCCCTCATGACAACATAGTATATGCTACAGGCAGCATAAACCTGTTCCAGACAAACTTCCACAGTTCTATGACCTCTACAATGGGTCCTGTGTTTGGAGAGGGTTGTAGAAGTAATGATCCCACATCACCAGACTGTCACTATAACATCACTGTTTTATGCAAGACTAAAGATCCAAACCAACTGTTCCTGTGTGGAACCAATGGACAACAACACACATTGTGCTGTTACATGAACCCATCAGACGACCCGTTTAACTGCACTCGATCCAAGGCCATCCAAGACATTAAACAACACATAAATGAAAGAGAGCCATCGCTCCTCATTGGTTCTCCTGAGGTAGAGCAGTTCTACACCACTCACTCAGGCACAGAGCGTTCCGTGGGGATCAACAGGTTCGGGAAGAAGAAGCTATGGACAGAAAACAGTGGAACAGAACAGAGATATGTGAGTTTGGTGGCTAGCGGGCATAGAGAGGATCGTCTGCAGGACAGACTATATGCTTTCTACATAGAGAAGAACCGAGACCCGTGTTTGGGCTGTGATCTCTGGGTTCCCTGGGTTGCTCAAGTCTGCATGGCTGATCTTGGAGGGCCCAAGTCTTATCTGCAGTTCAGGTGGACCTCCAAGCTGAGTGCCAGGCTCTTCTGTGGAGACCATGACAGCAGGCTGTACTTCACCCAGCTAGTGGACGTGAACACTGTTCTGGCAGAGAGGTGGCAGGATACCAGGGTCTATGCACTCTTCAGGAATGGCTGGGGTATGAGTGCTGTATGTGTCTACACCATAGAAGATATTGACCATATCTTTAAAACCTCCAACTTCACTGGGCACACGGGGTCCGTTCCAAGCCCACGACCTGGGGAGTGTGTTAAAGACAGTACTAAACTCCCCATGGAAGTCCTGAAGATGGTGGACAAGGTTTTAGAGATGAAGGAGGGGGTCACCAGTGGGCCTCTCCTGGTCACTCACCAGTATTACCACCACATCCGCGTGGACAGAGTCCAAGGCAAAGGGAAtgtcctgtttctgtctctagaGAATGGAGGGATTCATAAGGTTCTGGAGAGGGATGGTCAAGTCTTCGTCATCGCTGAGTTACAACCTTTTAACTACAGCGCACACATCCTCAGTATGATGTTGCACTCCTCCACGGGGAAGCTGTATCTGGCCTCCAGCAGAGAGCTGGTTCAGATTGACCTGGGCAGCTGTGAGCAGTATGGAGCCCAGTGTGAAGACTGTGTCCTGGCCAGAGACCCTTACTGCGGCTGGGACGGCAATCACTGCACCACAGCTACAAATAAGACAATTCAGGATGTGGAGAATGGGAACCATCAAGTATGCAGCAACATATCCAGAGGAGTTACTGCAAGTAAAGTTTACTTTCCAAGGTCACCAGTTGGCGCTGCAGATGAAATCAGAATTCCTCTATCTTCAAAGTACTTCCTCAGTTGCCCAACCTTGTCCAGCCACGCTGAGTACAGCTGGAGGCACCATGGCAACACCACATCAACACCGTGCATCTCCACAGGGTCAGAGCACCAGTGTCTCCTGCTAATAGAGAGCATGGGCCCTGAGCAGCAGGGAACATACAGCTgtgtgtctgaggagagaggcTACCACAGGACCCTGGTGCAATACAAGTTACAGCTAGACAGTGGGGCCACAGGCCTGGCCTCTCCCCGCTTGGCTTGTCTGGGTCTGGTACTAACACTGGTCCTGACTTTGCTCTGCTAGAATCAGCTCTGTGGGTTCTCACCCCAGCCCTATGGCCTAGCGGACTTGACTTGGACATGTCTGCACTTGTACTTTGGTCTTCCTTACACCCACGCTACCTCAAGAATAGTACATGACAGTCAACAGTCAAGTGACTGAGCCATTTCCTTTGTTTCTTTCACGATCAATTGGTCAAAAAACAGAACGCTGTAGAAGTTGAAGGAACTGCACTTGTGCTAAGTTAATGATTTATCTGGAGGAATTGGCctttatatattttataattaTGCTCTGTTTTCCAATATGGAACTTTGCAGATGTTTCAAATATTTTATGTGACAATCTGAATGTATAGTATATTGCTAAAACACTTAAGTTTTAGACAttttagaaatatatatatattttcttaacttTTAAGTTTCATGCTAACAGCATGAtagttgtaaatatatacagtaccagttaaaaatGTGGACATTACAggggttttatttatttgtactattttctacattgtagaattatagtgaagacatcaaaactatgaaataacacatatggaatca
>XR_002473936.2
AATGTTTTAAACCTGGGTCGGAAGAGAGAGGCTACTGTTTAGCCTAGACTAGTCTCGCCTTCTCTGAATTTAGACTACGTACATGCTTTGCGTGACGGAAGAGACTATATCAAGTGCGTGGTCTATCCAAAAAATATTACTGAGTGGAGTCTGTCTCACTAACGAACAATTAAGCTACTTTTAGGCTACTGTACTTGATTGAAGACAATACTAAATGGAAGACCAGACTGTAAAGACCTCACCCTCGTGTTATATGCTAAAATAACGCTACTACAGTTTCAAGTAATTAATTGCCGAGAACCAAGACTCAAAAAAGCATGAGTCTACTCGCGCTCTTTGCAGTCTTTTTAGGACTATTTTTTCCGGTGAAAGCTTCGGACGTTTCCCACAAACCTAGAGTGACATTGACAGACAAAGATGTGAGCTTCCTAAGAATCCACCTGTCTGGGAATAACAGCCGTATAGAGCTCTTGCACGGCCCTCATGACAACATAGTATATGCTACAGGCAGCATAAACCTGTTCCAGACAAACTTCCACAGTTCTATGACCTCTACAATGGGTCCTGTGTTTGGAGAGGGTTGTAGAAGTAATGATCCCACATCACCAGACTGTCACTATAACATCACTGTTTTATGCAAGACTAAAGATCCAAACCAACTGTTCCTGTGTGGAACCAATGGACAACAACACACATTGTGCTGTTACATGAACCCATCAGACGACCCGTTTAACTGCACTCGATCCAAGGCCATCCAAGACATTAAACAACACATAAATGAAAGAGAGCCATCGCTCCTCATTGGTTCTCCTGAGGTAGAGCAGTTCTACACCACTCACTCAGGCACAGAGCGTTCCGTGGGGATCAACAGGTTCGGGAAGAAGAAGCTATGGACAGAAAACAGTGGAACAGAACAGAGATATGTGAGTTTGGTGGCTAGCGGGCATAGAGAGGATCGTCTGCAGGACAGACTATATGCTTTCTACATAGAGAAGAACCGAGACCCGTGTTTGGGCTGTGATCTCTGGGTTCCCTGGGTTGCTCAAGTCTGCATGGCTGATCTTGGAGGGCCCAAGTCTTATCTGCAGTTCAGGTGGACCTCCAAGCTGAGTGCCAGGCTCTTCTGTGGAGACCATGACAGCAGGCTGTACTTCACCCAGCTAGTGGACGTGAACACTGTTCTGGCAGAGAGGTGGCAGGATACCAGGGTCTATGCACTCTTCAGGAATGGCTGGGGTATGAGTGCTGTATGTGTCTACACCATAGAAGATATTGACCATATCTTTAAAACCTCCAACTTCACTGGGCACACGGGGTCCGTTCCAAGCCCACGACCTGGGGAGTGTGTTAAAGACAGTACTAAACTCCCCATGGAAGTCCTGAAGATGGTGGACAAGGTTTTAGAGATGAAGGAGGGGGTCACCAGTGGGCCTCTCCTGGTCACTCACCAGTATTACCACCACATCCGCGTGGACAGAGTCCAAGGCAAAGGGAAtgtcctgtttctgtctctagaGAATGGAGGGATTCATAAGGTTCTGGAGAGGGATGGTCAAGTCTTCGTCATCGCTGAGTTACAACCTTTTAACTACAGCGCACACATCCTCAGTATGATGTTGCACTCCTCCACGGGGAAGCTGTATCTGGCCTCCAGCAGAGAGCTGGTTCAGATTGACCTGGGCAGCTGTGAGCAGTATGGAGCCCAGTGTGAAGACTGTGTCCTGGCCAGAGACCCTTACTGCGGCTGGGACGGCAATCACTGCACCACAGCTACAAAGTGAGACCAAGCGCAGCCTGCTTTCAGATTATAGCATTTGCTGTATAGATATTTAATGTAAGACAATTCAGGATGTGGAGAATGGGAACCATCAAGTATGCAGCAACATATCCAGAGGAGTTACTGCAAGTAAAGTTTACTTTCCAAGGTCAC

Function

NR:

description
semaphorin-7A-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607266.2 False 2760 mRNA 0.46 14 65525672 65546447
XR_002473936.2 True 1930 mRNA 0.47 14 65526561 65546448

Neighbor

gene id symbol gene type direction distance location
LOC110526352 LOC106587214 coding downstream 391847 65113278 ~ 65133825 (-)
LOC110526350 LOC106562128 coding downstream 551905 64958215 ~ 64973767 (-)
LOC118965085 LOC106587172 coding downstream 627124 64897435 ~ 64898548 (-)
LOC110526341 LOC106562136 coding downstream 810558 64697204 ~ 64715114 (-)
LOC110526338 LOC106587230 coding downstream 883038 64509743 ~ 64642634 (-)
LOC110526365 LOC106587205 coding upstream 53649 65600097 ~ 65765382 (-)
LOC110526369 xlkd1 coding upstream 246371 65792819 ~ 65795668 (-)
LOC110526367 LOC106587202 coding upstream 251625 65798073 ~ 65820337 (-)
LOC110526945 LOC106562099 coding upstream 280481 65826929 ~ 65828077 (-)
LOC110526372 LOC106587155 coding upstream 298510 65844958 ~ 65851082 (-)
G535713 NA non-coding downstream 55664 65469805 ~ 65470008 (-)
G535703 NA non-coding downstream 65667 65459776 ~ 65460005 (-)
G535695 LOC106587208 non-coding downstream 81560 65443501 ~ 65444112 (-)
G535693 NA non-coding downstream 84963 65440551 ~ 65440709 (-)
G535683 NA non-coding downstream 88842 65423954 ~ 65436830 (-)
G535791 NA non-coding upstream 39875 65586323 ~ 65586631 (-)
G535796 NA non-coding upstream 49818 65596266 ~ 65596494 (-)
G535798 NA non-coding upstream 52021 65598469 ~ 65598810 (-)
G535905 NA non-coding upstream 249541 65795989 ~ 65797435 (-)
G535925 ctr9 non-coding upstream 294261 65840709 ~ 65842247 (-)
G534603 NA other downstream 640140 64855495 ~ 64895099 (-)
G534349 NA other downstream 910876 64578798 ~ 64614796 (-)
G534201 NA other downstream 1026058 64498453 ~ 64499614 (-)
igdcc3 LOC106562146 other downstream 1700147 63823887 ~ 63944930 (-)
LOC110526310 LOC106587159 other downstream 2535394 62985486 ~ 62991995 (-)
G536183 NA other upstream 716038 66262486 ~ 66276289 (-)
LOC110526379 LOC106587193 other upstream 730754 66277162 ~ 66326558 (-)
LOC110526387 LOC106587187 other upstream 953940 66499996 ~ 66505055 (-)
G536630 LOC106562092 other upstream 1002919 66549367 ~ 66549974 (-)

Expression


Co-expression Network