LOC110526364 (LOC106587206)



Basic Information


Item Value
gene id LOC110526364
gene name LOC106587206
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65575069 ~ 65580465 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021607271.2
GACTTCATTTGTATCAAGCTACTTTTTTATTAGGTCATATTGTCAATAAGAAATACGATACTAATTAGCAGCAATGGTTTACTTTTTAGTTCAGCATATCCTCCCACCGACACCTCTGATTGGCTAAAACGGCCGGTCTGTCACGTCAATGCAGAGACCCACTGTGCAAAGGAAATTCCCAGTGCGCGTGCAGGATAAAGCGGGAATGGATCTCACGCACAAACCTTCGTTCACATTGATGTCGGtggaatataaaaataaaatctgaaaaaTGACGCAATATGCTCTAGGAGTCCACCTGCAGATTCTGCTGGCAGTGGGTCTGGGAGTGTTCTGCTTCTGCCTGGTGCTGGGCTGTCTACTGTGTTGGCGGAGAGGGAAGTATCATCCACCAGAGGACAAAGAGTCTGCACTGTCCCCTTCCTCAGCCACGTGTGAACGGATCACCGTGACCCTGACCCCCTCCTCTGGCACCTTACCCATCAAGCAGCAGTATGAGGAGCTAGACGGGGATGTCCTGGACCTCCCCTCCCACAATAGCAGCTCCTCCCCCTCTGAGAATGACCTCACCACCCTGCCCTTTGAACCTCGCCCCCGGTCGTCCTCCTCTGAGCTGAGGTCCTCCCCCAGGTCCTGCTTCCCCATGCGTCGCCTCAGCACCCCGGTagtgtcctcctcctcccactacaAGCCTTCAGGCCATGGCCGTGCCTCCCTGCCCTCCATCCCCAAACTGGGCCTAGTCTCCAAGACCCGTCGGGCGCTGGAACGCCGCTACTCCGTGAACGGTGACAACTTCCTGTACAGCGAACAGAGCCGCCTGACCAGCCCTCGCAGTGCCATGCACCCTCCTGGCCCTCAGAGGGAGCTGTCCCAGCCACAGTATGGCTCCAGCTCCAGCTCCCTATCCATCCCCACCAAGCCTGCTCCTCTCCTACACTTCTCCCTACTCTTTTCCCCGGCACGGGGCACTCTGACCACCAACATCATGGGCCTGTCCGGGGCGGCACGGCGGCGCAGTGGGGTGTTCGTACGAGCCAGCCTGCCCCCGCTCTGCCCCTCACCCCAGCAGGGGGCATCTCGGCGGCCCAGCCTCAGCCCAGAGATACAGTGCCAGAGCCTTGTGCTACAGGTGGGCTCTGTGGAAGAGCTCCGCGCCTGCACCCTCCGGCTGGCTGTGTTCAGCAGGGACTTTTCAGGCCTGAGAGAGACAGCGCTGGGAAAGCTGGAGATGCCTTGTGGGGAGATGGACTGGGAGCCCGACACAACTGTCACCTACACCAGGGAGCTCACCCCCACCAGGAGTAGGCTGAAAAGGagTATGAGTTCCCAGGAGACGTTGGGTCGTAGGAAGAGTTCGCTCTGTGCTGCTCCACGGGCCCTGGGTCAGCTCTTCATTCTGCTGCAGTACCAGACACTGGCCCACCGCATCAAGGTGATGGTCCGCAAGGCTGAAAACCTGGCCAAACTCTCCCGGATGCCAGGAGCAGCAGATCACTACGTAGTCATCAACCTCCGTCAGGATGGGAAGGTGATCAGTACGAAGGAGACCAAAGGGGCGGGAGGACACAACGCTGTGTGGAACGCTCCCTTTCTCTTTGACCTGCCTGTTGGTGACATCACTCAGCTGCCTCTTGCTCTGGAGTTCATCATCATGCAGgGGCGGCTCTACAGGAAGAGCAGCATGCTGGGCCGTGTGTTGATTGGCTGCGAGGCCCCAGAGGCAGGACAGGGACACTGGAGGGACATGTGCAGTCAGGGACAGGTGGAGACAGCGTACTGGCACCCCATCACACCAGAAGTCGTTTAGGACTTTATAGCTGACCTTATGGAGGTGTCAGGAGGGTCAGGACGTTgctggagagaggacaggtgaTAGAGGGCTTGCCAGACTAATGGGACACGCACAAAGGAcgtccacctctacgcagacgacaccattctatatacttccggcccgtccttggacactgtgctatctaacctccaaacgagcttcaatgccatacagcactccttccgtg

Function


NR:

description
synaptotagmin-4-like isoform X2

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021607271.2 True 2024 mRNA 0.58 5 65575069 65580465

Neighbor


gene id symbol gene type direction distance location
LOC110526363 LOC106587208 coding upstream 53471 65441092 ~ 65521598 (+)
LOC110526360 LOC106587210 coding upstream 134171 65434411 ~ 65440976 (+)
LOC110526359 LOC106587211 coding upstream 144669 65414289 ~ 65430400 (+)
LOC110526358 LOC106587209 coding upstream 167794 65403608 ~ 65407275 (+)
LOC110526357 LOC106587212 coding upstream 206492 65193659 ~ 65368577 (+)
LOC110526366 LOC106587204 coding downstream 188318 65768783 ~ 65771390 (+)
LOC110526368 LOC106587203 coding downstream 194322 65774787 ~ 65792680 (+)
LOC110526370 LOC106562103 coding downstream 253294 65833759 ~ 65843569 (+)
LOC110526373 LOC106587200 coding downstream 367954 65948419 ~ 66035381 (+)
LOC110526374 LOC100196685 coding downstream 504654 66085119 ~ 66098315 (+)
G534921 NA non-coding upstream 125047 65449775 ~ 65450022 (+)
G534920 NA non-coding upstream 125376 65449492 ~ 65449693 (+)
G534894 NA non-coding upstream 162084 65412372 ~ 65412985 (+)
G534870 NA non-coding upstream 198688 65375571 ~ 65376381 (+)
G534982 NA non-coding downstream 3807 65584272 ~ 65584519 (+)
G534984 NA non-coding downstream 5730 65586195 ~ 65586907 (+)
G535020 NA non-coding downstream 55193 65635658 ~ 65642430 (+)
G535118 NA non-coding downstream 215569 65796034 ~ 65797422 (+)
G535155 NA non-coding downstream 243904 65824369 ~ 65824684 (+)
LOC110526356 LOC106587213 other upstream 413739 65065380 ~ 65178884 (+)
G534653 NA other upstream 457113 65113280 ~ 65169563 (+)
G534453 NA other upstream 727965 64790322 ~ 64847104 (+)
LOC110526344 LOC106587225 other upstream 798733 64769099 ~ 64781704 (+)
LOC100750227 LOC106587244 other upstream 2235571 63338236 ~ 63549030 (+)
G535150 LOC106587155 other downstream 267158 65847623 ~ 65849441 (+)
G536406 NA other downstream 1022320 66602785 ~ 66604053 (+)
G536995 zfhx3 other downstream 1432755 67013220 ~ 67018653 (+)
G537029 zfhx3 other downstream 1523841 67104306 ~ 67104908 (+)
G537032 LOC106587324 other downstream 1529211 67109676 ~ 67110628 (+)

Expression



Co-expression Network