LOC110526370 (LOC106562103)


Basic Information

Item Value
gene id LOC110526370
gene name LOC106562103
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65833759 ~ 65843569 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607287.2
ACCGGTATTACACTAGTGGGTCATATCATTCCACCAGTCGCTCGCTGTACTACCCGGACATTGTTTTGTGAACACCTATGCATTTGTTCCAGAGCGGAAGTGGAGCCAGATCTTTGAGACCACGGGTACAGCTGAACACATTTTGGGAATATATTAGAGTAGGGACGTGGATTTCCATCAGCCAATATGTCTCGGGGTTCAATTGAAATCCCCTTACGGGACACCGACGAGGTTATTGAGCTTGATTTCGACCAGTTGCCAGAAGGAGATGAGGTCATCAGTATCCTGAAACAGGAGCACACACAGTTGCACATATGGATTGCTCTTGCTCTGGAGTATTACAAACAGACGAAGACGGAGGACTTTGTCAAGCTGCTGGAGGCGGCCCGTATCGATGGGAACCTAGACTACAGAGACCATGAGAAGGACCAGATGACCTGTCTGGACACCTTGGCAGCCTACTATGTCCAGCAGGCACGTAAAGAGAAGAACAAAGATGCCAAGAAGGAGCTCATCACTCAGGCCACCCTGCTCTACACCATGGCAGACAAGATCATCATGTACGACCAGAACCACTTGTTGGGAAGAGCCTGTTTCTGTCTGCTGGAGGGGGACAAAATGGACCAGGCTGACGCTCAGTTCCACTTTGTCTTGAATCAGTCCACCAATAACATCCCTGCTCTACTTGGTAAAGCTTGCATCTCCTTCAATAAGAAGGATTACAGGGGAGCACTGGCCTACTATAAGAAGGCTCTACGCACAAACCCTGGATGTCctgCCGAAGTGAGGCTGGGGATGGGCCACTGCTTTGTCAAGCTCAGTAAGCTGGAGAAGGCCCGTCTGGCCTTTGGCCGGGCCCTGGAGCTCAACTCCAAGTGTGTGGGAGCCCTTGTGGGCTTGGCTGTGCTGGAGCTCAACAGCAAGGAGCCCGACTCCATCAAGAATGGAGTgcagctcttatccagagcctaCACCATCGACCCCAGCAACCCCATGGTGCTCAACCACCTGGCTAACCACTTCTTCTTCAAAAAGGACTACAGTAAAGTGCAGCACCTGGCTCTCCATGCCTTTCACAACACAGAGGTGGAAGCTATGCAGGCTGAGAGCTGCTACCAGTTGGCCCGCTCCTTTCATGTACAGGAGGACTATGACCAGGCCTTCCAGTACTACTACCAGGCCACCCAGTTTGCCTCGTCTACCTTTGTGCTGCCTTTCTTTGGCCTGGGGCAGATGTACGTGTACCGTAGAGACAAGGAGAATGCAGCCCAGTGCTTTGAGAAGGTCCTAAAGGCCTACCCCAACAACTATGAAACCATGAAGATCCTGGGCTCTCTTTATGCTACTTCAGATGATCAGGAAAAGAGAGACATTGCCAAAGGTCATCTGAAGAAGGTGACCGAGCAGTACCCTGATGACGTGGAGGCCTGGATCGAGCTGGCCCAGATCCTGGAGCAGACCGACATCCAGGGCGCCCTCTCTGCCTACGGCACGGCCACCCGCATTCTGCAGGAGAAGGTCCAGGCTGACGTCCCCCCTGAGATCCTCAACAACCTGGGGGCTCTCCACTTCAGACTGGGGAACCTGGGAGAGGCCAAGAAATACTTCCTGGCTTCTTTGGAGCGGGCCAAAGCTGAGGGCGAGCATGACGAGCATTACTACAACGCCATCTCTGTCACCACCTCTTACAACCTAGCCAGGCTCTACGAGGCCATGTGCGAATTCCACGAGGCGGAGAAACTCTACAAGAACATCCTGAGGGAACATCCCAACTACGTTGACTGTTACCTGCGTCTTGGGGCAATGGCTCGTGACAAAGGAAACTTCTATGAAGCTTCCGACTGGTTCAAAGAGGCTCTGCAGATTAATCAGGATCACCCAGACGCCTGGTCCCTGATCGGGAATCTCCACTTGGCCAAGCAGGAGTGGGGTCCGGGTCAGAAGAAGTTTGAGCGTATCCTCAAGCAGCCGTCCACTCAGAACGACACCTACTCCATGCTGGCCCTGGGCAACGTGTGGCTCCAGACCCTGCACCAGCCCACTAGGGACCGGGAGAAGGAAAAGAGACATCAGGATCGAGCCCTGGCCATTTACAAACAGGTCCTACGAAACGACTCCAAGAATCTTTACGCTGCCAACGGCATAGGTGCCGTCCTGGCCCATAAGGGCTACTACCGAGAGGCCCGTGACGTGTTTGCCCAGGTGAGAGAAGCCACAGCTGATATCAGCGACGTCTGGCTCAATCTGGCCCACATCTACGTGGAGCAGAAACAGTACATCAGCGCTGTGCAGATGTACGAGAACTGTCTGAAGAAATTCTACAAGCATCAGAACACTGAGGTGCTGCTGTACCTGGCTCGGGCACTCTTCAAATGCGGGAAACTCCAGGAGTGCAAACAGACTCTGCTGAAGGCGCGTCACGTGGCCCCCAGTGACACGGTGCTGATGTTCAACGTGGCCCTGGTGCTGCAGAGGCTGGCCACTCTGGTGCTGAAGGATGAGAAGAGTAACCTAAAGGCTGTACTCAGTGCTGTCAAAGAGCTGGAGCTGGCCCACCGGTATTTCAGCTACCTTGCCAAGGCTGGTGACAAGATGAGGTTCGACCTAGTGCTTGCCTCCACTGAGGCCAGGCAATGCTCTGACCTGCTGAGTCAGGCCCAGTACCACGTGGCTCGGGCCAGGAAGCAGgacgaggaggagaaggagatccGGGCCAAACAGGATCAGGAGAGGGACTTCCTGCGCCAACAGATGCATAAAGAACAGgaggagaagagaaccAAGCAGGAAGAGGATCAGAAGAAGCTGCTGGAGCAGAGAGCCATGTATGTGGAGAAGACCAAGGGTCTGCTCTCCTTCGCCGATGGAATgaaggaggaaaggaaagagaagaagaaaggtggCGGCCGACGCAAGAAAGGGGGTGACTTTGATGAGTTTGTCAACGAtggctctgatgaggacctgccagtgagaaggaggaagaagaggaagggtGGCAGCGGAAGTGAGGAGGAGGGCcgcaagaagaggaggagATCCAACAAAGGGGGTGACGATGGCAGCGATGACGAGGAAGGAGGCTCACGGCCCAAAAAGCAACGCAAACCCAGAGCGGGCGGCAAGAAGTTCCAAAGGGCCGAGCCTGTGCCACCGTCTCTCAAAGGCAAGATCAAGTCGAAGGCCATCATCTCATCCTCTGACTCTTCATCAGACGAGGATGGACTGAAAATTGCTGAAGACCGAAACCCCAGAGACAGTGGTTCAGGCTCTGATAATGAGAGCAGCCACAAGAAGCGCATCGCCTCCGACAGTGAGTCCGACGGGGGCCGGAACCGCTCTGGCAGCGACGCTGGAAGCCCCCAACGCTCTGGAAACTCGGGTAGCGACTCAGGCAGCGAACGTCCAGTGAAGAGGAAGAGAGTGCAGCAGCAGTCTGACTCAGAGCAGTCTGATAACGAGAGCAAGAGGAGCCGCTCTGGGTCGGAGAACGAGTCCCGGCCAGGCTCACCGGCCGCAGCCTCTGGCTCTGAAGCGGGCTCTCCGGCGGGCTCCCCACGCCGCTCCGACAATGGATCAGAACCAGGGGGCTCTGCCAACGAGGCCTCCAACCACGGCTCTGGCTCTGACAGCGACTGAGGCTTCAAACTCAGAACTGActtttttcaacaaaaaaaaagttattttgacATTGATTTTTGTAGAGGCTTTTTTGTTCCGTCTTGGTTTGTACCATGAAATTGAAATGAGCACATGCAGTGTAGCATTGTGGCCCATAATGTGGGTTGTCTTTAATTGTTTTTTGTCACCAGACTGTTAAGACTTTTGCATTGATGCTGTACCTCGTgtgcttttgttttgttgatgattGATGGGAAATGTGACTTGTAAGTATTCTGGCAGCTGTAACCCATATATTTTATATCTTAAAATGATTGGAAGAGGTGATGTCATGGAAAATTAGTAAATTGGCCCAGATTTGGGACAAATTCtatgtagataataaacaaacacaaaataaatagtttttttttctatTTCTGATGATGAAGCTGCTTGTATGACATTGGAAAACAACTTGACACTTATCTTCtgattatggggtaatgtgtcaATTGTTTTGGCTGCATTTGCCTTGTTTGTGTATCAACATGCCCTCTGCCATTCAGAAAAATATTGTTAGTCATGTTGAGGTGAATAAAATGGCAGATTACAAGTTCA

Function

NR:

description
RNA polymerase-associated protein CTR9 homolog

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0001756 somitogenesis biological_process
GO:0014032 neural crest cell development biological_process
GO:0043473 pigmentation biological_process
GO:0016593 Cdc73/Paf1 complex cellular_component

KEGG:

id description
K15176 CTR9; RNA polymerase-associated protein CTR9

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607287.2 True 4221 mRNA 0.52 22 65833759 65843569

Neighbor

gene id symbol gene type direction distance location
LOC110526368 LOC106587203 coding upstream 41079 65774787 ~ 65792680 (+)
LOC110526366 LOC106587204 coding upstream 62369 65768783 ~ 65771390 (+)
LOC110526364 LOC106587206 coding upstream 253294 65575069 ~ 65580465 (+)
LOC110526363 LOC106587208 coding upstream 312161 65441092 ~ 65521598 (+)
LOC110526360 LOC106587210 coding upstream 392861 65434411 ~ 65440976 (+)
LOC110526373 LOC106587200 coding downstream 104850 65948419 ~ 66035381 (+)
LOC110526374 LOC100196685 coding downstream 241550 66085119 ~ 66098315 (+)
dkk3a LOC106562112 coding downstream 484162 66327731 ~ 66332554 (+)
pkd1l2a LOC106587186 coding downstream 617154 66460723 ~ 66500000 (+)
LOC110526388 LOC106587185 coding downstream 663342 66506911 ~ 66565353 (+)
G535162 NA non-coding upstream 2522 65831035 ~ 65831237 (+)
G535158 LOC106562099 non-coding upstream 5836 65827377 ~ 65827923 (+)
G535156 NA non-coding upstream 8324 65824997 ~ 65825435 (+)
G535155 NA non-coding upstream 9075 65824369 ~ 65824684 (+)
G535118 NA non-coding upstream 36337 65796034 ~ 65797422 (+)
G535166 NA non-coding downstream 280 65843849 ~ 65844347 (+)
G535151 NA non-coding downstream 1403 65844972 ~ 65846257 (+)
G535176 NA non-coding downstream 33099 65876668 ~ 65876921 (+)
G535177 NA non-coding downstream 33374 65876943 ~ 65877244 (+)
G535182 NA non-coding downstream 39157 65882726 ~ 65883012 (+)
LOC110526356 LOC106587213 other upstream 672429 65065380 ~ 65178884 (+)
G534653 NA other upstream 715803 65113280 ~ 65169563 (+)
G534453 NA other upstream 986655 64790322 ~ 64847104 (+)
LOC110526344 LOC106587225 other upstream 1057423 64769099 ~ 64781704 (+)
LOC100750227 LOC106587244 other upstream 2494261 63338236 ~ 63549030 (+)
G535150 LOC106587155 other downstream 4054 65847623 ~ 65849441 (+)
G536406 NA other downstream 759216 66602785 ~ 66604053 (+)
G536995 zfhx3 other downstream 1169651 67013220 ~ 67018653 (+)
G537029 zfhx3 other downstream 1260737 67104306 ~ 67104908 (+)
G537032 LOC106587324 other downstream 1266107 67109676 ~ 67110628 (+)

Expression


Co-expression Network