LOC110526372 (LOC106587155)


Basic Information

Item Value
gene id LOC110526372
gene name LOC106587155
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65844958 ~ 65851082 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981772.1
atattaatattttcggGAATTCATCGTTGTCAAGCCGCCAAAGTGGAGAGTGTGATTGCAGAAGGGGGTGCTTCTCGTTTCAGTGCTTCTTCGGGTGGGGGAGGAGGTAGGGGTGCCTCTCAGTACCATCCCAAGACTGTCGGCAACAGCGAGTTCCTGGGGAAAGCCCCAGGATCTAGCGTTCAGAGATGGGTTCCTTCACGAAGCACTAGACGAGATGCCAATGCCTCCAATGAAAAAGAACGACATGATGCAATCTTCAGGAAAGTGAGAGGCATACTTAATAAACTGACCCCCGAGAAGTTTGACAAGCTATGCCTTGAGCTCCTGAATGTGGGCGTAGATTCAAAACTCGTCCTAAAAGGAGTGATCTTGCTGATTGTTGACAAAGCCCTCGAAGAGCCCAAGTATAGCTCGCTTTATGCTCAGCTATGTCTGCGCTTGGCAGAGGACGCACCGAACTTTGACGGCCCATCGCCAGAGATCCAAACGCCACAAAAACAAAGCACCACATTCAGGAGACTTTTGATTTCTAAGCTTCAAGATGAATTTGAGAACCGCGCCAAAAATGTTGAAATCTATGACAAACATGACAACCCTCTTACCTCTGAGGAAGAGGAGCAGCACGCCATTGCCAAGTTTAAGATGCTGGGCAATATCAAATTCATCGGGGAACTTGGCAAACTTGATCTTATCCATGAATCTATCCTTCATAAGTGCATCAAAACActtttggaAAAGAAGAAGAGAGTCCAACTTAAGGATATGGGGGAAGATTTGGAGTGCCTCTGTCAGATAATGAGAACAGTGGGGCCTAGACTCGATCATGAAAAGGCTAGGTCTTTAATGGATCAGTACTTTGGCCGTATGAAATCCTTAATGAACAACAAGGACTTGCCGGCAAGGATTCGTTTCCTGGTGCAGGATTCAGTGGAGTTGCGAGAGAACAATTGGGTGGCTCGCAAAGCTTTTATCGATAATGGACCAAAGACGATTAACCAGATTCGTCAGGAAGCAGTAAAAGATTTGGGTGTTTTTATTCCACCAATGGCCCAGGGAATGAGGACTGACTTCTTTTTGGAGGGGCCCTTCATGCCTAGGATGAAACTTGACAGGGAAACTCTTGGAGGGTTGGCGGATATGTTTGGACAGATGCCAGGGAGTGGGATCGGCACAGGCCCTGGAGTGATTCAGGACCGGTATTCACCCACCATGGGCCGTCACCGCACCAACCCACTCTTCAATGGCCACAGTGGGCACACAGCCCCTGCTACCCAGTCTCAGTTCGAGATGGGAGGCAAGCCCTTCATCAAATCTAACCAGGGGCAGAATCAAATCTTCCAGAACCAGAATCACTCGCAACAACAGCAGGCTCAGTCTAAGGACATGGCACCGCGTTTCATCAAGAAAGGATCGCTCAACGCTGATGAGATCAGTCTAAGGCCGGCACAGTCATTCCTTCTCAACACAAACCAAGTCCCAAAGTTGCAGCCACAGATACCAACGATGATTCCGCCAAGTGCTCAACCTCCACGCACTCAAACACCACCACTGGGACAGCCTCCTCTGCTTGGTCTGAAAACCAACCCTCCTCCAATTCAGGAAAAACCTCCAAAGACCACCAAGAAACCGCCTCCTGCAAAGGAAGAGTTGCTTAAGATGACCGAGACCATAGTGACCGATTACCTGAACAGCAAAAACATTGATGAAGCTGTGAACTGTGTAAGAGAGATGAAGGCTCCCAAACACTTCCTGCCTGAGATGTTGAGCAAGATCGTGATCTGTTCTCTTGACTGCCCAGATGAAGACAAGGAGCATGCCAGCACCTTGATCCACACACTCCGCACAGAGGGCCTTGTTACTGGGGAGAGCTTCATGCGGgcttTCCTCAgtgttctggaccagtgtccCAAGATCGAAGTGGACGTTCCTCTGGTGAAGTCCTACCTGGCCCAGTTTGCGGCTCGAGCCATCATCGCAGACCTGGTGAGCATGGATGAGCTAGCCCACCCTCTGGAGAATGGCACCCACTTTCCCCTCTTCCTACTTTGTCTGCAACAGACTGCCAAGCTGAAGGATCGAGAGTGGCTCACTGATCTATTCCAGCAAAGCAAGGTCAACATGCAGAAGATGCTGCCTGAAATCGACCAAAACAAAGATCGCATGCTAGAGATCTTGGAGGGCAAAGGCCTGAGCTTCTTATTCCCACTCATGAAGCTGGAAAAGGAACTGCTGAAGCAGATCAAAACAGACCCCTCTCCCCAGTCCATCTACAAGTGGATCAAGGACAACATCTCCCCTACGCTCCACACCGACAAGGGCTTCGTCAACATCCTCATGACCAGTTTCTTGCAGTACATTGCCCAAGAGATAAATGCCAATGAGGAAGAAGACCAGTTATCAGCCCCCACTAAAGAACAGCTGGACCAGGAGAAGCAGCTGCTGCTGGCCTTCAAGCCAGTGATGCAGAAGTTCCTGCATGATCACCAGGACCTGCAAGTCAGTGCCCTCTACGCACTGCAGGTCCACTGCAACGCTAAAGCTTTCCCTAAAGGCATGTTACTGCGCTATTTTGTCCACTTCTACGATATGGAAATCATTGAAGAAGAAGCCTTTCTTGCATGGAAAGAAGACATAACTCAAGAGTTTCCTGGAAAGGGAAAAGCATTATTCCAGGTGAACCAGTGGCTGACCTGGCTGGAGACTGCTGAGGAAGAGGAGTCTGAGGAGGAAGCTGACTGAAGATCCAGCCAAAAGCCTTATGGTGCAAAAAATGCTATTGatactgtttttttgttgttcccCTGTCCCAATATGATATGCATACCTAACCACTGCAACACTTCATTCCGCTATCAAGTTTTTGTCCATGTTAAgccaatgcatttttttttatttttggctCTTTTCTAGCGCTTAAGCGTAATAATGGTTTGCCATCTGTTTTTAAGAGCCCCTTTTTTAAGATCAATGGTATTAGCTGCTTTGAATAGACCTTTGTTATTCTTCAAGAAAATTGCAAGGGCCTTGTTCCTGCTGCTGAATTCTAtgcttttttttttgtgttaacCAATTAACAACACTGTAGAGATGCACTTTGCTCAACGTCATACATGAGTCGTTGCAATATTCACTCATCTGTTGATTGTTACAAAGAATCCTCAACTGTAATCATTGGTTACCATAACATTTAATGGTTTTATTTGCTTGTGTTTCTACCTCCTCCTTATGGGCTTCATGTGCTGGGTTTGAATTACATAATGTCTCCATTTCAAATGTAAACACTTCTGGACTAATGCACAAgtctgtaataaaaaaaaaaaggttttacttGCACAATAATATCTTGATTGTAAGAATTCAAAGTGGTTTTGTGGATGTATGTATGGCACATCACCTAGGAGAGATGAAATTATGCGGCCTTGTTAATTTATCAACCCTCGTTGctgtgtctccccccccccccccccttctgtgtCTGTCAAACATTGTGATACTTGAATTCTGATTTTCTTTACAGGGAACAACCAAACAATGGGTGAGTTGGTTTTGCATGGCTCGGTGCCCGATGGAATGGTCTAAAAATGTGCAAGTTACCCATCCGGGGCATTTGGCCATGCAAAACCAACTCACTTGGTCTGTTCTCATGCAACAATTTTCAAACTACAGAGGTGCAACATGTTTTATTGGTGAATGATGTTAACATGAGAAATTATTTCAATTTTGTTACACTTTCTCTGCCCCCCCCCGTGTGAAAATTTGAAGCCTGTTTGCCATAATGTCTGATCCAGATATTTATTGATCGTTTTTatcatgattaaaaaaaataataatctcaaCTTATGATCTGATGAAATTATGCGGTATACATCTGTACTGTACAACTTTCTGTAAAAGTGTTActgtaatgttctgtaagtgCTAAGAATGTTCTTGTGTACCACTATTGCTTAACTTTCAAATAAAGTTAAACACTGTGTTCACTTA

Function

NR:

description
eukaryotic translation initiation factor 4 gamma 2, partial

GO:

id name namespace
GO:0007498 mesoderm development biological_process
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03260 EIF4G; translation initiation factor 4G

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981772.1 True 3987 mRNA 0.45 20 65844958 65851082

Neighbor

gene id symbol gene type direction distance location
LOC110526945 LOC106562099 coding downstream 16881 65826929 ~ 65828077 (-)
LOC110526367 LOC106587202 coding downstream 24621 65798073 ~ 65820337 (-)
LOC110526369 xlkd1 coding downstream 49290 65792819 ~ 65795668 (-)
LOC110526365 LOC106587205 coding downstream 79576 65600097 ~ 65765382 (-)
LOC110526361 LOC106587207 coding downstream 298510 65525672 ~ 65546448 (-)
LOC100499618 LOC106587199 coding upstream 247235 66098317 ~ 66122139 (-)
LOC110526375 LOC106587197 coding upstream 328544 66179626 ~ 66181802 (-)
LOC110526376 LOC106587195 coding upstream 333145 66184227 ~ 66252048 (-)
LOC110526378 LOC106587194 coding upstream 408621 66259703 ~ 66271100 (-)
LOC110526379 LOC106587193 coding upstream 426080 66277162 ~ 66326558 (-)
G535925 ctr9 non-coding downstream 2711 65840709 ~ 65842247 (-)
G535905 NA non-coding downstream 47523 65795989 ~ 65797435 (-)
G535798 NA non-coding downstream 246148 65598469 ~ 65598810 (-)
G535796 NA non-coding downstream 248464 65596266 ~ 65596494 (-)
G535791 NA non-coding downstream 258327 65586323 ~ 65586631 (-)
G535934 NA non-coding upstream 7946 65859028 ~ 65859247 (-)
G535938 NA non-coding upstream 21194 65872276 ~ 65872479 (-)
G535946 NA non-coding upstream 31772 65882854 ~ 65883080 (-)
G535958 NA non-coding upstream 46451 65897533 ~ 65930393 (-)
G536093 NA non-coding upstream 264045 66115127 ~ 66116208 (-)
G534603 NA other downstream 959426 64855495 ~ 64895099 (-)
G534349 NA other downstream 1230162 64578798 ~ 64614796 (-)
G534201 NA other downstream 1345344 64498453 ~ 64499614 (-)
igdcc3 LOC106562146 other downstream 2019433 63823887 ~ 63944930 (-)
G536183 NA other upstream 411404 66262486 ~ 66276289 (-)
LOC110526387 LOC106587187 other upstream 649306 66499996 ~ 66505055 (-)
G536630 LOC106562092 other upstream 698285 66549367 ~ 66549974 (-)
G538277 NA other upstream 2291169 68142251 ~ 68144907 (-)

Expression


Co-expression Network