LOC110526373 (LOC106587200)


Basic Information

Item Value
gene id LOC110526373
gene name LOC106587200
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 65948419 ~ 66035381 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607289.2
ATCGAAATGGATAATTGTGGAAATGAATGCACAGTAGCCTATTACACAATTTCACTATCGTATCTCATTGGACAGCGGTTGAACGTATGTTCCACACGCCTTCTGTCGGTCGGTGAAATCGCGACTGGTGTGGATTTGCAAATTAAGCGAAATAGGGAACGTTCGTCACCAAGGCAATCAACTTTACTTTCCAACAACTGagatattttttaaatctttgaCCTACCTATTTGGATTAAATCATAGCCTTCTGCGTGTGAAGACACAGTGCGGATATTGGCTCCGTTGCCCGCGTTTGCAGAACGAATTGCAACGTTGTGGAGTTGTAATTTATCCAGGTTGCTCTCAAGTGACGCGCATAGCACATTTCTATGATTTTGGTGGGCGACAGTCGCACTTGTCCTCTGGTAATCTGAATTTTGTTGGCTGTATGGAGGGATGTCGGGATGGCTTGCACCAGGAGAACCAAAACTTTGGTGTCTACATGCGTGATCTTGAGTGGCATGACCAACATCGTGTGTCTCCTCTATGTTGGATGGGTCACTAATTATATCGCGAATGTATACATCAAAGTCCCTATGCCTGTCCCAGAGAAAAAGTTAGAAGGCGACAAGAAGGGGGAAACCCTACGGATCATAGAAAGACTTGATCGACTTGAGAATGTGGTCAACCAGCACATACAAGAAACCCCCCTGAAAGGAGAGGATGTTCTAGGAGACAAATCGTTTTCTGACTCGTCCCTGTTTGCCCACTGGGGTCAGGAGCTGAGCGCTGACAGCCGCAGGGTGGCCCTGAAGATGTTTCAGTACTACGGCTACAACGGCTACCTCAGCGACCGCCTCTCCCTGGACAGAGCCATCCCAGACCTCAGACCTGATGGGTGTAAAAACATCACGTATCCATCTAACCTCCCTCAAGTTAGCATTGTGTTTATCTTTGTGAACGAGGCCTTGTCCGTCATCCTGCGTTCCATCCACTCTGCCATGCACAGgaccccctcccacctcctcaaaGAGATCATCCTGGTTGACGACAACAGTGACAACGATGAGCTGAAGGAGAAGCTACAGGACTTTGTGTCTGAGACCAACAGCCAGCGTCCCGGCTTCATCAAGGTGGTGCGCCATGATAAACAGGAGGGTCTGATCCGCTCCAGGGTGAGTGGGTGGAGGGCGGCCACCGCTCCGGTTGTGGCCCTGTTCGACGCCCACGTGGAGTTCAACATAGGCTGGGCTGAGCCTGTTCTCATGAGAATTCAGGAGGACAGAACACGCATCATCTCTCCGTCGTTTGATAACATCAAATACGACACGTTTGAGATTGAAGAGTACCCACTGTCTGCTCAGGGCTTCGACTGGGAGCTGTGGTGCCGCTACCTCAACCCACCCAAGGCCTGGTGGCACCAGGCCAACAACAGTGCTCCAATTAGGAGCCCTTCTCTGATTGGCTGCTTCGTGGTGGACAGGCTGTACTTTGAGGAGATTGGCCTGCTTGACGAGGGGATGGAGGTGTATGGGGGCGAGAACGTGGAGCTGGGCGTCAGGGTGTGGCAGTGTGGGGGCAGTGTGGAAGTCCTGCCCTGTGCCCATATCGCCCATATAGAGCGTGCCCACAAGCCCTATACTGAGGACCTGACGTCTCACGTGAGACGGAACGCCCTGAGGGTTGCGGAGGTCTGGATGGACGAGTTTAAGAGCCATGTGTATATGGCCTGGAACATCCCTCAGGAGgACTCAGGAATAGACATTGGCGATATCTCTGAGAGGAAGGCCCTTAGGAAGAGGCTCCAGTGTAAGACGTTTCGGTGGTACCTGGTCAACATCTACCCAGAGATGAGGATGTACACAGACACCATTGCATATGGAGTGCTGAAGAACTCTCTGAAGAGTGAcctgtgtctggaccaggggccGGACACCGACAACGTCCCCATCCTGTACCTCTGTCATGGAATGACACCTCAGAATGTGTACTACACCAGCACTCAGCAGTTACATGTAGGGGTGCTCAGTCCCACCATCGATGACGATGACAACAAGTGCCTGGTGGATGTGAACAGCCGACCGCGCCTCATCGAGTGTAGCTACGCCACAGCCAAGCGCATGAAGCTCCACTGGCTATTTACTCAGGGAGGTTCCGTTCAGAACAGGAAATCAAAGCGATGCCTTGAGCTGGTGGCCAGCAATGACAACGAGTTCGGGTACCAGCTGGCCCTTCACAAATGCACGGGACAGAAATGGTCCATCACAAACACACTGCCTGGCAGTGCCCTATGATGGGCTCTTCTGAGAGAACACTGGAAATACTGTAGCACACTGGACTGGGTGGGGTGCTTATTCTGTTGCTCCTCTGGACTTTCTGTTGTGGATAAAGGAGAATGGTGTATGGTTAATGACAGGCATTGGAGGACCATGATGTCTTTTGTTCACCAGTTGACATCACATGATAAATGTTAAACATTTTCTTTCGCCTATGGATCAGCCATAGATGGTTGATATTGTGCATTATGAGATACTACAACGTTATGAAACATATTTTGTTAAGAGTGTAGTTGGTTTTCTGTTGACTTGAAGGTTGTACTGGGTTCTATATGTTCATTGTTGTACTTGGTAAATAACTGCTACTGTGTAGCAAGCATTAGGAAAAGTTCTCTGCTGTTTTCTTTTCTTCTAGTGTCTCAGGTTTGTAGGATAAGTTTATTATGCGATTAAGCTGTACAGTTTTGGGGAATTGCCAACATGTTGGAATATATATATGGAAATAATATACTATTTTCTAAGTGTAAATATTCAAAATATTTATAATATATGTCAGTAAAAGTACTGATGCTATA

Function

NR:

description
polypeptide N-acetylgalactosaminyltransferase 18-like

GO:

id name namespace
GO:0006486 protein glycosylation biological_process
GO:0005794 Golgi apparatus cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0016757 transferase activity, transferring glycosyl groups molecular_function

KEGG:

id description
K00710 GALNT; polypeptide N-acetylgalactosaminyltransferase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607289.2 True 2833 mRNA 0.49 11 65948419 66035381

Neighbor

gene id symbol gene type direction distance location
LOC110526370 LOC106562103 coding upstream 104850 65833759 ~ 65843569 (+)
LOC110526368 LOC106587203 coding upstream 155739 65774787 ~ 65792680 (+)
LOC110526366 LOC106587204 coding upstream 177029 65768783 ~ 65771390 (+)
LOC110526364 LOC106587206 coding upstream 367954 65575069 ~ 65580465 (+)
LOC110526363 LOC106587208 coding upstream 426821 65441092 ~ 65521598 (+)
LOC110526374 LOC100196685 coding downstream 49738 66085119 ~ 66098315 (+)
dkk3a LOC106562112 coding downstream 292350 66327731 ~ 66332554 (+)
pkd1l2a LOC106587186 coding downstream 425342 66460723 ~ 66500000 (+)
LOC110526388 LOC106587185 coding downstream 471530 66506911 ~ 66565353 (+)
LOC110526389 LOC106587184 coding downstream 540109 66575490 ~ 66591573 (+)
G535194 NA non-coding upstream 18018 65897509 ~ 65930401 (+)
G535182 NA non-coding upstream 65407 65882726 ~ 65883012 (+)
G535177 NA non-coding upstream 71175 65876943 ~ 65877244 (+)
G535176 NA non-coding upstream 71498 65876668 ~ 65876921 (+)
G535151 NA non-coding upstream 102162 65844972 ~ 65846257 (+)
G535358 NA non-coding downstream 111204 66146585 ~ 66146855 (+)
G536174 NA non-coding downstream 221303 66256684 ~ 66261444 (+)
G536188 NA non-coding downstream 241170 66276551 ~ 66276752 (+)
G536192 NA non-coding downstream 247696 66283077 ~ 66284653 (+)
G536218 NA non-coding downstream 297328 66332709 ~ 66334248 (+)
G535150 LOC106587155 other upstream 98978 65847623 ~ 65849441 (+)
LOC110526356 LOC106587213 other upstream 787089 65065380 ~ 65178884 (+)
G534653 NA other upstream 830463 65113280 ~ 65169563 (+)
G534453 NA other upstream 1101315 64790322 ~ 64847104 (+)
LOC110526344 LOC106587225 other upstream 1172083 64769099 ~ 64781704 (+)
G536406 NA other downstream 567404 66602785 ~ 66604053 (+)
G536995 zfhx3 other downstream 977839 67013220 ~ 67018653 (+)
G537029 zfhx3 other downstream 1068925 67104306 ~ 67104908 (+)
G537032 LOC106587324 other downstream 1074295 67109676 ~ 67110628 (+)
G537606 NA other downstream 1719175 67754556 ~ 67756618 (+)

Expression


Co-expression Network