LOC100499618 (LOC106587199)


Basic Information

Item Value
gene id LOC100499618
gene name LOC106587199
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66098317 ~ 66122139 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980726.1
GATGGTTTGGTTCGATGTAATTAAACTCTGAAACTGTCACATCAAACGGATAGGGAAAAAGAGCTGGGGAAAAATAGGTCAGTGGAGAATCTAATTACAAGGAAAAGACTTTCAGGCACAGTAGAGCAGAGCATTAGTTCTGGTCTGATTACAGGAGCAGGACAAGCCTCAGTGACCTGAGGTAGCTGTGCTTTTTAAGATCTGGGTCACTGCTGGAAAGAAACGGAGTGAGATGTTTTGAGGATAACCGGCCTTATGAATATTTGTGATGATCTAATGGCAGACCAAAGAATGGACATTTCCTCCACGATGAACGAGTTCATGTCTCCCGGCTCCACTGATCTAATCAGCTCGATCGGCACACCCGGCATGGACTACACACGCAAGAGAAAAAGCAGCACCACAGACTACCAAATTGATGGATTTTCTTTTGAGGATAGCATGGACACAGACAATGATAGACTTGGTGATCATCAAGGCCGGATTAAAAATGCCAGAGAGGCCCACAGTCAGATTGAGAAGAGACGCAGGGACAAGATGAACAGCTTCATAGACGAGCTGGCCGCACTAGTGCCTACATGCAACGCTATGTCCCGTAAACTGGACAAACTAACAGTCCTGCGCATGGCTGTCCAGCACATGAAGACCTTAAGAGGTGCCGCTAACCCCTACACTGAAGCTAACTACAAACCAGCCTTCCTGTCAGACGACGAACTGAAGCACTTAATACTGAGGgCATCTGATGGTTTTCTGTTTGTTGTTGGCTGCGATCGAGGGAAGATACTGTTTGTTTCCGAGTCAGTCTACAAAATCCTAAACTACAGCCAAAATGACCTGATTGGTCAGAGCCTGTTTGATTACCTGCATCCTAAAgacattgccaaagtcaaggAGCAGCTGTCCTCGTCGGACACGGCGCCACGGGAGCGCCTCATCGATTCCAAAACTGGCCTTCCAGTAAAGACAGACATCACCCCCGGCCCATCCAGACTTTGCTCTGGAGCCAGGCGATCTTTCTTCTGCAGGATGAAGTGCAATCGGCCCCTCATCAAAATGGAGGACAAGGACTTCCCATCCACCTGCTCCAAGAAGAAAGCTGACCGTAAGAGCTTCTGCACAATACACAGTACTGGCTACCTGAAGAGCTGGCCACCCACCAAGATGGGTCTAGATGATGACAATGAACCAGACAACGAGGGCTGCAACCTCAGTTGCCTGGTGGCCATTGGACAGCTGCATCCCCACATTGTCCCGCAGCCAATGGACAATGAGATCCGTGTCAAACCCACTGAGTATGTCTCTCGTCATGCCATCGACGGGAAGTTTGTCTTTGTTGATCAGAGGGCCACTGCCATTTTGGCTTATCTACCCCAAGAGTTGTTGGGTACATCGTTTTATGAATACTTTCATCAAGATGACATAGGGCACCTTGCGGAATGTCATAGACAAGTGCTCCAGATGAGGGAGAAGATCAATACAAACTGCTACAAGTTCAAAATAAAAGACGGCTCCTTTATCACGCTGAGGAGTCGCTGGTTCAGTTTTATGAACCCTTGGACCAAAGAGGTGGAGTACATTGTCTCCACCAACACTGTTGTCTGtGTGCCTGAAGGATCTGATGGCATCTATCCTCAGCTCGCCGCCTCCCCCCAGAGCATGGATAGTGTACTCACAGACGGAACCGGCAAGCGGGCCCTTCAGACCGTGCCTGGCATCCCCGGCGGCACAAGGGCAGGGGCGGGAAAGATCGGCCGGATAATCGCAGAAGAGGTGATGGAGATCCAGAGGATAAGAGGCTCCTCGCCCTCCAGCTGTGGCTCCAGTCCTCATAACTTCACCAGCACTCCACCCCCAGACATGTCGTCCCCAGGGGGAAAGAAGATACAGAACAGTGGAACCCCAGAACATCCCTCAGCAGGGCTGATACCGGGACCAGACTCCGTAGGCTATCCGTACTCCAATAACTCCAATCTAAGCGATAACTCTCACATTGGCATTGACATCATGGATGAGCCAGGCTCCAGCAGCCCGAGTAATGACGAGGCAGCCATGGCTGTGATCATGAGCCTTCTGGAGGCAGACGCAGGGTTGGGAGGCCCAGTGGACTTCAGTGACTTACCCTGGCCACTGTGAGGACTGTCAGGCTTAGGCAAGGCCTCCTAAATGGGCTGAACATGGTAGAGTAAGGGCTGGGTGTTACAGTATTCACATTGTGTCAGTTTGTGACCAGTACCAGAGAGCCATATCAACAGGGCTAATGTGACTGTAGCCTCACAGTAAGGCTGAATGCAGGCGGGCCCTGAAAAGGAAGGAATACTAGGCCTGGGATCGGCCATGATGTACAGTCCACCTCAGTGCGGTTGGGGAAAAGTGAAACTGCCTCattacccctgtagtattattgTACCAGTTATCCGGGTTTTTCTATGTCCATTCATCCTCACAGGCATTGAACCCAGCTCTTTTATAATGGCATTGTTTTTTGTGTTTTTACACtacaaaaaaacatgtcaatattTCTAAAGAAAATTGTATCATACTTGTTTATTCTAATTTTATCTAAATATGTAAAAGTGTATTGTATCAGTAGTGAATTATTTAAAAAAGAAAACTTCCTCTATTGCTTATTTCCATTTTCAAAAATACAAAACAGGGCGGTCTGTATCAAGTTACCATCCAGTGGCATACAGTATCGCTGCTAAATCAGCTGACGGGATTTTACATTGTTGCTACAATGCAGAAATCCAAGGTACTTTGCTACAATATGTTGTGTGGGAATAGTGAGTAATCCATTTGCTTGCCAACAATAGATGAAATGTGACAAATCACAGACTAGTTCCTCTGCCCGAGTTGCTAGGAGACTGGTTGGTATTGTCCACACTACTTGTGATGTTTGCATATTATGGGGGTACACCATTTCTCATCACCCACTCACCTTCCTGGACCACCTCACTGCCAGAGGCATTCACCCACACACAGGATGTGCTTTACTACTGACCCCCGGGAAACAGTTGTTCCCTAGCAACAGGCAGACTATCCAAATGACCCATAAAAGGAAAACTTTCCTCCTGATCTGAAATCAGGTCAACTCAAACCACAATTGCAGGCTAGGTATTGCACATGTATTAGGCTACTTTTTGAACTTTCAGTTTAAAAGTATAGGGGTTCTATGTAGAGGGATAAGGTGAAAGTAACCTCTTTCAACTCAAGTGATATTAATGGATAATAAGCACAATGATAGGAATAAAAACACCATACAACGTA
>XM_036980725.1
CTGGGTTAGTGGTGCAACGATCATCACAGGAGGAAGAAAGTAGGTCAGTGTATTCCTCTTGCCTATTGTCGTTCCAATCCGCCTCAGTACACATGTGCTACCTTTCCACACGTACTGTGCTGGTCGGTGCATCTGTTAGAAAAAGCCCAGCTCTGACATAAGGAGGCCAGTCCACTTCCTGCACCACCCATCCAGATCTGGGTCACTGCTGGAAAGAAACGGAGTGAGATGTTTTGAGGATAACCGGCCTTATGAATATTTGTGATGATCTAATGGCAGACCAAAGAATGGACATTTCCTCCACGATGAACGAGTTCATGTCTCCCGGCTCCACTGATCTAATCAGCTCGATCGGCACACCCGGCATGGACTACACACGCAAGAGAAAAAGCAGCACCACAGACTACCAAATTGATGGATTTTCTTTTGAGGATAGCATGGACACAGACAATGATAGACTTGGTGATCATCAAGGCCGGATTAAAAATGCCAGAGAGGCCCACAGTCAGATTGAGAAGAGACGCAGGGACAAGATGAACAGCTTCATAGACGAGCTGGCCGCACTAGTGCCTACATGCAACGCTATGTCCCGTAAACTGGACAAACTAACAGTCCTGCGCATGGCTGTCCAGCACATGAAGACCTTAAGAGGTGCCGCTAACCCCTACACTGAAGCTAACTACAAACCAGCCTTCCTGTCAGACGACGAACTGAAGCACTTAATACTGAGGgCATCTGATGGTTTTCTGTTTGTTGTTGGCTGCGATCGAGGGAAGATACTGTTTGTTTCCGAGTCAGTCTACAAAATCCTAAACTACAGCCAAAATGACCTGATTGGTCAGAGCCTGTTTGATTACCTGCATCCTAAAgacattgccaaagtcaaggAGCAGCTGTCCTCGTCGGACACGGCGCCACGGGAGCGCCTCATCGATTCCAAAACTGGCCTTCCAGTAAAGACAGACATCACCCCCGGCCCATCCAGACTTTGCTCTGGAGCCAGGCGATCTTTCTTCTGCAGGATGAAGTGCAATCGGCCCCTCATCAAAATGGAGGACAAGGACTTCCCATCCACCTGCTCCAAGAAGAAAGCTGACCGTAAGAGCTTCTGCACAATACACAGTACTGGCTACCTGAAGAGCTGGCCACCCACCAAGATGGGTCTAGATGATGACAATGAACCAGACAACGAGGGCTGCAACCTCAGTTGCCTGGTGGCCATTGGACAGCTGCATCCCCACATTGTCCCGCAGCCAATGGACAATGAGATCCGTGTCAAACCCACTGAGTATGTCTCTCGTCATGCCATCGACGGGAAGTTTGTCTTTGTTGATCAGAGGGCCACTGCCATTTTGGCTTATCTACCCCAAGAGTTGTTGGGTACATCGTTTTATGAATACTTTCATCAAGATGACATAGGGCACCTTGCGGAATGTCATAGACAAGTGCTCCAGATGAGGGAGAAGATCAATACAAACTGCTACAAGTTCAAAATAAAAGACGGCTCCTTTATCACGCTGAGGAGTCGCTGGTTCAGTTTTATGAACCCTTGGACCAAAGAGGTGGAGTACATTGTCTCCACCAACACTGTTGTCTGtGTGCCTGAAGGATCTGATGGCATCTATCCTCAGCTCGCCGCCTCCCCCCAGAGCATGGATAGTGTACTCACAGACGGAACCGGCAAGCGGGCCCTTCAGACCGTGCCTGGCATCCCCGGCGGCACAAGGGCAGGGGCGGGAAAGATCGGCCGGATAATCGCAGAAGAGGTGATGGAGATCCAGAGGATAAGAGGCTCCTCGCCCTCCAGCTGTGGCTCCAGTCCTCATAACTTCACCAGCACTCCACCCCCAGACATGTCGTCCCCAGGGGGAAAGAAGATACAGAACAGTGGAACCCCAGAACATCCCTCAGCAGGGCTGATACCGGGACCAGACTCCGTAGGCTATCCGTACTCCAATAACTCCAATCTAAGCGATAACTCTCACATTGGCATTGACATCATGGATGAGCCAGGCTCCAGCAGCCCGAGTAATGACGAGGCAGCCATGGCTGTGATCATGAGCCTTCTGGAGGCAGACGCAGGGTTGGGAGGCCCAGTGGACTTCAGTGACTTACCCTGGCCACTGTGAGGACTGTCAGGCTTAGGCAAGGCCTCCTAAATGGGCTGAACATGGTAGAGTAAGGGCTGGGTGTTACAGTATTCACATTGTGTCAGTTTGTGACCAGTACCAGAGAGCCATATCAACAGGGCTAATGTGACTGTAGCCTCACAGTAAGGCTGAATGCAGGCGGGCCCTGAAAAGGAAGGAATACTAGGCCTGGGATCGGCCATGATGTACAGTCCACCTCAGTGCGGTTGGGGAAAAGTGAAACTGCCTCattacccctgtagtattattgTACCAGTTATCCGGGTTTTTCTATGTCCATTCATCCTCACAGGCATTGAACCCAGCTCTTTTATAATGGCATTGTTTTTTGTGTTTTTACACtacaaaaaaacatgtcaatattTCTAAAGAAAATTGTATCATACTTGTTTATTCTAATTTTATCTAAATATGTAAAAGTGTATTGTATCAGTAGTGAATTATTTAAAAAAGAAAACTTCCTCTATTGCTTATTTCCATTTTCAAAAATACAAAACAGGGCGGTCTGTATCAAGTTACCATCCAGTGGCATACAGTATCGCTGCTAAATCAGCTGACGGGATTTTACATTGTTGCTACAATGCAGAAATCCAAGGTACTTTGCTACAATATGTTGTGTGGGAATAGTGAGTAATCCATTTGCTTGCCAACAATAGATGAAATGTGACAAATCACAGACTAGTTCCTCTGCCCGAGTTGCTAGGAGACTGGTTGGTATTGTCCACACTACTTGTGATGTTTGCATATTATGGGGGTACACCATTTCTCATCACCCACTCACCTTCCTGGACCACCTCACTGCCAGAGGCATTCACCCACACACAGGATGTGCTTTACTACTGACCCCCGGGAAACAGTTGTTCCCTAGCAACAGGCAGACTATCCAAATGACCCATAAAAGGAAAACTTTCCTCCTGATCTGAAATCAGGTCAACTCAAACCACAATTGCAGGCTAGGTATTGCACATGTATTAGGCTACTTTTTGAACTTTCAGTTTAAAAGTATAGGGGTTCTATGTAGAGGGATAAGGTGAAAGTAACCTCTTTCAACTCAAGTGATATTAATGGATAATAAGCACAATGATAGGAATAAAAACACCATACAACGTA
>XM_036980727.1
CTGGGTTAGTGGTGCAACGATCATCACAGGAGGAAGAAAGTAGGTCAGTGTATTCCTCTTGCCTATTGTCGTTCCAATCCGCCTCAGTACACATGTGCTACCTTTCCACACGTACTGTGCTGGTCGGTGCATCTGTTAGAAAAAGCCCAGCTCTGACATAAGGAGGCCAGTCCACTTCCTGCACCACCCATCCAGATCTGGGTCACTGCTGGAAAGAAACGGAGTGAGATGTTTTGAGGATAACCGGCCTTATGAATATTTGTGATGATCTAATGGCAGACCAAAGAATGGACATTTCCTCCACGATGAACGAGTTCATGTCTCCCGGCTCCACTGATCTAATCAGCTCGATCGGCACACCCGGCATGGACTACACACGCAAGAGAAAAAGCAGCACCACAGACTACCAGGATAGCATGGACACAGACAATGATAGACTTGGTGATCATCAAGGCCGGATTAAAAATGCCAGAGAGGCCCACAGTCAGATTGAGAAGAGACGCAGGGACAAGATGAACAGCTTCATAGACGAGCTGGCCGCACTAGTGCCTACATGCAACGCTATGTCCCGTAAACTGGACAAACTAACAGTCCTGCGCATGGCTGTCCAGCACATGAAGACCTTAAGAGGTGCCGCTAACCCCTACACTGAAGCTAACTACAAACCAGCCTTCCTGTCAGACGACGAACTGAAGCACTTAATACTGAGGgCATCTGATGGTTTTCTGTTTGTTGTTGGCTGCGATCGAGGGAAGATACTGTTTGTTTCCGAGTCAGTCTACAAAATCCTAAACTACAGCCAAAATGACCTGATTGGTCAGAGCCTGTTTGATTACCTGCATCCTAAAgacattgccaaagtcaaggAGCAGCTGTCCTCGTCGGACACGGCGCCACGGGAGCGCCTCATCGATTCCAAAACTGGCCTTCCAGTAAAGACAGACATCACCCCCGGCCCATCCAGACTTTGCTCTGGAGCCAGGCGATCTTTCTTCTGCAGGATGAAGTGCAATCGGCCCCTCATCAAAATGGAGGACAAGGACTTCCCATCCACCTGCTCCAAGAAGAAAGCTGACCGTAAGAGCTTCTGCACAATACACAGTACTGGCTACCTGAAGAGCTGGCCACCCACCAAGATGGGTCTAGATGATGACAATGAACCAGACAACGAGGGCTGCAACCTCAGTTGCCTGGTGGCCATTGGACAGCTGCATCCCCACATTGTCCCGCAGCCAATGGACAATGAGATCCGTGTCAAACCCACTGAGTATGTCTCTCGTCATGCCATCGACGGGAAGTTTGTCTTTGTTGATCAGAGGGCCACTGCCATTTTGGCTTATCTACCCCAAGAGTTGTTGGGTACATCGTTTTATGAATACTTTCATCAAGATGACATAGGGCACCTTGCGGAATGTCATAGACAAGTGCTCCAGATGAGGGAGAAGATCAATACAAACTGCTACAAGTTCAAAATAAAAGACGGCTCCTTTATCACGCTGAGGAGTCGCTGGTTCAGTTTTATGAACCCTTGGACCAAAGAGGTGGAGTACATTGTCTCCACCAACACTGTTGTCTGtGTGCCTGAAGGATCTGATGGCATCTATCCTCAGCTCGCCGCCTCCCCCCAGAGCATGGATAGTGTACTCACAGACGGAACCGGCAAGCGGGCCCTTCAGACCGTGCCTGGCATCCCCGGCGGCACAAGGGCAGGGGCGGGAAAGATCGGCCGGATAATCGCAGAAGAGGTGATGGAGATCCAGAGGATAAGAGGCTCCTCGCCCTCCAGCTGTGGCTCCAGTCCTCATAACTTCACCAGCACTCCACCCCCAGACATGTCGTCCCCAGGGGGAAAGAAGATACAGAACAGTGGAACCCCAGAACATCCCTCAGCAGGGCTGATACCGGGACCAGACTCCGTAGGCTATCCGTACTCCAATAACTCCAATCTAAGCGATAACTCTCACATTGGCATTGACATCATGGATGAGCCAGGCTCCAGCAGCCCGAGTAATGACGAGGCAGCCATGGCTGTGATCATGAGCCTTCTGGAGGCAGACGCAGGGTTGGGAGGCCCAGTGGACTTCAGTGACTTACCCTGGCCACTGTGAGGACTGTCAGGCTTAGGCAAGGCCTCCTAAATGGGCTGAACATGGTAGAGTAAGGGCTGGGTGTTACAGTATTCACATTGTGTCAGTTTGTGACCAGTACCAGAGAGCCATATCAACAGGGCTAATGTGACTGTAGCCTCACAGTAAGGCTGAATGCAGGCGGGCCCTGAAAAGGAAGGAATACTAGGCCTGGGATCGGCCATGATGTACAGTCCACCTCAGTGCGGTTGGGGAAAAGTGAAACTGCCTCattacccctgtagtattattgTACCAGTTATCCGGGTTTTTCTATGTCCATTCATCCTCACAGGCATTGAACCCAGCTCTTTTATAATGGCATTGTTTTTTGTGTTTTTACACtacaaaaaaacatgtcaatattTCTAAAGAAAATTGTATCATACTTGTTTATTCTAATTTTATCTAAATATGTAAAAGTGTATTGTATCAGTAGTGAATTATTTAAAAAAGAAAACTTCCTCTATTGCTTATTTCCATTTTCAAAAATACAAAACAGGGCGGTCTGTATCAAGTTACCATCCAGTGGCATACAGTATCGCTGCTAAATCAGCTGACGGGATTTTACATTGTTGCTACAATGCAGAAATCCAAGGTACTTTGCTACAATATGTTGTGTGGGAATAGTGAGTAATCCATTTGCTTGCCAACAATAGATGAAATGTGACAAATCACAGACTAGTTCCTCTGCCCGAGTTGCTAGGAGACTGGTTGGTATTGTCCACACTACTTGTGATGTTTGCATATTATGGGGGTACACCATTTCTCATCACCCACTCACCTTCCTGGACCACCTCACTGCCAGAGGCATTCACCCACACACAGGATGTGCTTTACTACTGACCCCCGGGAAACAGTTGTTCCCTAGCAACAGGCAGACTATCCAAATGACCCATAAAAGGAAAACTTTCCTCCTGATCTGAAATCAGGTCAACTCAAACCACAATTGCAGGCTAGGTATTGCACATGTATTAGGCTACTTTTTGAACTTTCAGTTTAAAAGTATAGGGGTTCTATGTAGAGGGATAAGGTGAAAGTAACCTCTTTCAACTCAAGTGATATTAATGGATAATAAGCACAATGATAGGAATAAAAACACCATACAACGTA

Function

NR:

description
aryl hydrocarbon receptor nuclear translocator-like protein 1

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007165 signal transduction biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003677 DNA binding molecular_function
GO:0004871 obsolete signal transducer activity molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG:

id description
K02296 ARNTL, BMAL1, CYC; aryl hydrocarbon receptor nuclear translocator-like protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980726.1 False 3264 mRNA 0.47 18 66098317 66111806
XM_036980725.1 False 3260 mRNA 0.48 19 66098317 66122139
XM_036980727.1 True 3239 mRNA 0.48 18 66098317 66122139

Neighbor

gene id symbol gene type direction distance location
LOC110526372 LOC106587155 coding downstream 247235 65844958 ~ 65851082 (-)
LOC110526945 LOC106562099 coding downstream 270240 65826929 ~ 65828077 (-)
LOC110526367 LOC106587202 coding downstream 277980 65798073 ~ 65820337 (-)
LOC110526369 xlkd1 coding downstream 302649 65792819 ~ 65795668 (-)
LOC110526365 LOC106587205 coding downstream 332935 65600097 ~ 65765382 (-)
LOC110526375 LOC106587197 coding upstream 57487 66179626 ~ 66181802 (-)
LOC110526376 LOC106587195 coding upstream 62088 66184227 ~ 66252048 (-)
LOC110526378 LOC106587194 coding upstream 137564 66259703 ~ 66271100 (-)
LOC110526379 LOC106587193 coding upstream 155023 66277162 ~ 66326558 (-)
usp47 LOC106587191 coding upstream 210534 66332673 ~ 66354876 (-)
G535958 NA non-coding downstream 167924 65897533 ~ 65930393 (-)
G535946 NA non-coding downstream 215237 65882854 ~ 65883080 (-)
G535938 NA non-coding downstream 225838 65872276 ~ 65872479 (-)
G535934 NA non-coding downstream 239070 65859028 ~ 65859247 (-)
G535925 ctr9 non-coding downstream 256070 65840709 ~ 65842247 (-)
G536108 NA non-coding upstream 15557 66137696 ~ 66137933 (-)
G536125 NA non-coding upstream 36470 66158609 ~ 66158817 (-)
G536127 NA non-coding upstream 37773 66159912 ~ 66160232 (-)
G536129 NA non-coding upstream 41266 66163405 ~ 66163824 (-)
G536136 NA non-coding upstream 48700 66170839 ~ 66171044 (-)
G534603 NA other downstream 1212785 64855495 ~ 64895099 (-)
G534349 NA other downstream 1483521 64578798 ~ 64614796 (-)
G534201 NA other downstream 1598703 64498453 ~ 64499614 (-)
igdcc3 LOC106562146 other downstream 2272792 63823887 ~ 63944930 (-)
G536183 NA other upstream 140347 66262486 ~ 66276289 (-)
LOC110526387 LOC106587187 other upstream 378249 66499996 ~ 66505055 (-)
G536630 LOC106562092 other upstream 427228 66549367 ~ 66549974 (-)
G538277 NA other upstream 2020112 68142251 ~ 68144907 (-)

Expression


Co-expression Network