bco1 (bcmo1)


Basic Information

Item Value
gene id bco1
gene name bcmo1
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66406013 ~ 66438607 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980738.1
CGCAGTTCATATAAAACTGATGGCCTACGACTACGCTAAAAACATAGAAGAAAGACCTGATCCAGTGAAGGCGGACCTCAAAGGAAACCTTCCAAGCTGGCTGCAAGGCACGTTGTTGCGCAATGGGCCAGGCATATTCTCAGTGGGGGATACCACATACAACCACTGGTTCGATGGGATGGCCCTGATGCACAGCTTTACATTCAAAGATGGTGAGGTAATCTACAGAAGCAGATATTTACGTGGAGACACATACAAAGACAACATGGCAGCCAAAAGAATTGTTGTGTCTGAAATGGGGACAATGGCCTACCCGGACCCAGGCAAAAACGTCATATCTAGGGTGATCACCTTTCTTAACCACACGGTCCCAGACTTCACTGACAACTGTGGCAACAATTTCATTCGATATGGGAAGGATTATTATGCAACCTCTGAAACCAACTACATCCGCAAAGTAGATCCTGTGACTCTGGAGACTCAGGACAAGGTTGACTACATGAAATACCTTGCTGTGAACCTGGTGACATCCCATCCACATTACGATAAAGACGGAACAGCCTACAACATGGGAACTTCAATAGCGGAGAAGGGAAAGACTAAATACACCTTATTCAAGGTTCCAGACACTACTGCGGGagATAAGGCCAATGCTTCTCCAGCCTTGAAGAACCTTGAGGTGATCTGCACAGTGCCCTGCCGCTCCCTCCTCAGCCCCAGCTACTACCACAGCTTCGGCATGACTGACAACTACTTCATCTTCATTGAGCAGCCATTCAAACTGGACATCCTCAAGATGGCCACAGCATACATGAGAGGGGTCAACTGGGCTAGTTGTCTTAAGTTTTGCCCTGAGGAAAATACCCTGATTCACCTGATCGATAGAAAGACAGGCAAAGAAGTGGGCATAAAGTACTACACAGAGGCAATGATAGTGTACCATCACGTGAATGCCTTTGAAGAGGATGGTCATGTCATCTTTGATGTTATCGCCTATGAAGATCCCAGCTTATACAACATGTTCTACCTAAATGTGTTAAAAGAACAATCAAAGACCTCCGCAATGTCTGTGCCAAAGTGCAAAAGATTTGCCCTTCCTGTACAGACTGACAAGGGGATTGATGTAGGAGATGATATGGTGAAACTCCAATACACAACAGCCAGCgctgtgaaagagaaagagggtaaACTACTCTGCCAGCCAGAGGTGCTTTGTGACAGTGTGGAACTACCCAGGATCAATTATGACTTCAATGGCAAGAAGTACAGATTTGTCTACATGACTTGTGTTGCAATGACAGCAGTGGCAACTAAGATCATGAAGTTGGACATTGAGACAAAGGAGAGGACTGAATGGAGTGAGGAGAACTGCTGGCCATCAGAGCCTGTGTTCATTCCAAGACCCaacggagaaggagaggatgatgGTGTGGTCTTGACAACAGTCATCAACTCCAATCCAGGGGAATCTGGCTTCATCTTGGTGCTGGATGCAAAGTCTTTCAAGGAGGTAGCTCGAGCATATATGAATGCAGAGCTTCACATGGACATGCATGGATACTTCATCCCAATGGAAAATTAGTATGACAAAGAAATGATTTACTCCAAGAGTAGCCTACTACCCTCCACAAAGAAATAGACACTATGGGAAACGATAGGGATAGTATTAGATACTTTAAATACCAAAGTGCCTTGTAAATGTTTTCTTAACAATGTCCCAGTGCTAATATTGCTACATTTTGCACAACACATGTGAGCAGTTATCTATGGACTAATGCCAGTGTAGTCTTGAATTTGTCTTTATCTCAAGGGAACCCATTATGAATATCCTCAAAATCATCTACCATGAAATATTTAAGAAAATGTTTTTTAGCGTTTTGCTAAGTATATAACACACCAATCACATAATTATGTATTTTATTGTTCATGTTTTTATGTAGTTTTGTCCTGTATAGCATTGTCAAGGAAAATCCTTATAATACAAATTATTGTACCATTTGTTGTTATTTAATTAGGCCTAATAAAGTGTGAAAAGAGTGA
>XM_036980739.1
CCGCAGTTCATATAAAACTGATGGCCTACGACTACGCTAAAAACATAGAAGAAAGACCTGATCCAGTGAAGGCGGACCTCAAAGGAAACCTTCCAAGCTGGCTGCAAGGCACGTTGTTGCGCAATGGGCCAGGCATATTCTCAGTGGGGGATACCACATACAACCACTGGTTCGATGGGATGGCCCTGATGCACAGCTTTACATTCAAAGATGGTGAGGTAATCTACAGAAGCAGATATTTACGTGGAGACACATACAAAGACAACATGGCAGCCAAAAGAATTGTTGTGTCTGAAATGGGGACAATGGCCTACCCGGACCCAGGCAAAAACGTCATATCTAGGGTGATCACCTTTCTTAACCACACGGTCCCAGACTTCACTGACAACTGTGGCAACAATTTCATTCGATATGGGAAGGATTATTATGCAACCTCTGAAACCAACTACATCCGCAAAGTAGATCCTGTGACTCTGGAGACTCAGGACAAGGTTGACTACATGAAATACCTTGCTGTGAACCTGGTGACATCCCATCCACATTACGATAAAGACGGAACAGCCTACAACATGGGAACTTCAATAGCGGAGAAGGGAAAGACTAAATACACCTTATTCAAGGTTCCAGACACTACTGCGGGagCCTTGAAGAACCTTGAGGTGATCTGCACAGTGCCCTGCCGCTCCCTCCTCAGCCCCAGCTACTACCACAGCTTCGGCATGACTGACAACTACTTCATCTTCATTGAGCAGCCATTCAAACTGGACATCCTCAAGATGGCCACAGCATACATGAGAGGGGTCAACTGGGCTAGTTGTCTTAAGTTTTGCCCTGAGGAAAATACCCTGATTCACCTGATCGATAGAAAGACAGGCAAAGAAGTGGGCATAAAGTACTACACAGAGGCAATGATAGTGTACCATCACGTGAATGCCTTTGAAGAGGATGGTCATGTCATCTTTGATGTTATCGCCTATGAAGATCCCAGCTTATACAACATGTTCTACCTAAATGTGTTAAAAGAACAATCAAAGACCTCCGCAATGTCTGTGCCAAAGTGCAAAAGATTTGCCCTTCCTGTACAGACTGACAAGGGGATTGATGTAGGAGATGATATGGTGAAACTCCAATACACAACAGCCAGCgctgtgaaagagaaagagggtaaACTACTCTGCCAGCCAGAGGTGCTTTGTGACAGTGTGGAACTACCCAGGATCAATTATGACTTCAATGGCAAGAAGTACAGATTTGTCTACATGACTTGTGTTGCAATGACAGCAGTGGCAACTAAGATCATGAAGTTGGACATTGAGACAAAGGAGAGGACTGAATGGAGTGAGGAGAACTGCTGGCCATCAGAGCCTGTGTTCATTCCAAGACCCaacggagaaggagaggatgatgGTGTGGTCTTGACAACAGTCATCAACTCCAATCCAGGGGAATCTGGCTTCATCTTGGTGCTGGATGCAAAGTCTTTCAAGGAGGTAGCTCGAGCATATATGAATGCAGAGCTTCACATGGACATGCATGGATACTTCATCCCAATGGAAAATTAGTATGACAAAGAAATGATTTACTCCAAGAGTAGCCTACTACCCTCCACAAAGAAATAGACACTATGGGAAACGATAGGGATAGTATTAGATACTTTAAATACCAAAGTGCCTTGTAAATGTTTTCTTAACAATGTCCCAGTGCTAATATTGCTACATTTTGCACAACACATGTGAGCAGTTATCTATGGACTAATGCCAGTGTAGTCTTGAATTTGTCTTTATCTCAAGGGAACCCATTATGAATATCCTCAAAATCATCTACCATGAAATATTTAAGAAAATGTTTTTTAGCGTTTTGCTAAGTATATAACACACCAATCACATAATTATGTATTTTATTGTTCATGTTTTTATGTAGTTTTGTCCTGTATAGCATTGTCAAGGAAAATCCTTATAATACAAATTATTGTACCATTTGTTGTTATTTAATTAGGCCTAATAAAGTGTGAAAAGAGTGA
>XM_036980741.1
ATTATTTTGAAtaaaagagaaaatgtacgctcacctttgctgcaccttggtcctcatccTTCAACAGCTGTGACAGCCCAGTAGGCTACTACTAGGATGGCCTACGACTACGCTAAAAACATAGAAGAAAGACCTGATCCAGTGAAGGCGGACCTCAAAGGAAACCTTCCAAGCTGGCTGCAAGGCACGTTGTTGCGCAATGGGCCAGGCATATTCTCAGTGGGGGATACCACATACAACCACTGGTTCGATGGGATGGCCCTGATGCACAGCTTTACATTCAAAGATGGTGAGGTAATCTACAGAAGCAGATATTTACGTGGAGACACATACAAAGACAACATGGCAGCCAAAAGAATTGTTGTGTCTGAAATGGGGACAATGGCCTACCCGGACCCAGGCAAAAACGTCATATCTAGGGTGATCACCTTTCTTAACCACACGGTCCCAGACTTCACTGACAACTGTGGCAACAATTTCATTCGATATGGGAAGGATTATTATGCAACCTCTGAAACCAACTACATCCGCAAAGTAGATCCTGTGACTCTGGAGACTCAGGACAAGGTTGACTACATGAAATACCTTGCTGTGAACCTGGTGACATCCCATCCACATTACGATAAAGACGGAACAGCCTACAACATGGGAACTTCAATAGCGGAGAAGGGAAAGACTAAATACACCTTATTCAAGGTTCCAGACACTACTGCGGGagATAAGGCCAATGCTTCTCCAGCCTTGAAGAACCTTGAGGTGATCTGCACAGTGCCCTGCCGCTCCCTCCTCAGCCCCAGCTACTACCACAGCTTCGGCATGACTGACAACTACTTCATCTTCATTGAGCAGCCATTCAAACTGGACATCCTCAAGATGGCCACAGCATACATGAGAGGGGTCAACTGGGCTAGTTGTCTTAAGTTTTGCCCTGAGGAAAATACCCTGATTCACCTGATCGATAGAAAGACAGGCAAAGAAGTGGGCATAAAGTACTACACAGAGGCAATGATAGTGTACCATCACGTGAATGCCTTTGAAGAGGATGGTCATGTCATCTTTGATGTTATCGCCTATGAAGATCCCAGCTTATACAACATGTTCTACCTAAATGTGTTAAAAGAACAATCAAAGACCTCCGCAATGTCTGTGCCAAAGTGCAAAAGATTTGCCCTTCCTGTACAGACTGACAAGGGGATTGATGTAGGAGATGATATGGTGAAACTCCAATACACAACAGCCAGCgctgtgaaagagaaagagggtaaACTACTCTGCCAGCCAGAGGTGCTTTGTGACAGTGTGGAACTACCCAGGATCAATTATGACTTCAATGGCAAGAAGTACAGATTTGTCTACATGACTTGTGTTGCAATGACAGCAGTGGCAACTAAGATCATGAAGTTGGACATTGAGACAAAGGAGAGGACTGAATGGAGTGAGGAGAACTGCTGGCCATCAGAGCCTGTGTTCATTCCAAGACCCaacggagaaggagaggatgatgGTGTGGTCTTGACAACAGTCATCAACTCCAATCCAGGGGAATCTGGCTTCATCTTGGTGCTGGATGCAAAGTCTTTCAAGGAGGTAGCTCGAGCATATATGAATGCAGAGCTTCACATGGACATGCATGGATACTTCATCCCAATGGAAAATTAGTATGACAAAGAAATGATTTACTCCAAGAGTAGCCTACTACCCTCCACAAAGAAATAGACACTATGGGAAACGATAGGGATAGTATTAGATACTTTAAATACCAAAGTGCCTTGTAAATGTTTTCTTAACAATGTCCCAGTGCTAATATTGCTACATTTTGCACAACACATGTGAGCAGTTATCTATGGACTAATGCCAGTGTAGTCTTGAATTTGTCTTTATCTCAAGGGAACCCATTATGAATATCCTCAAAATCATCTACCATGAAATATTTAAGAAAATGTTTTTTAGCGTTTTGCTAAGTATATAACACACCAATCACATAATTATGTATTTTATTGTTCATGTTTTTATGTAGTTTTGTCCTGTATAGCATTGTCAAGGAAAATCCTTATAATACAAATTATTGTACCATTTGTTGTTATTTAATTAGGCCTAATAAAGTGTGAAAAGAGTGA
>XM_036980740.1
TTCTTGTCTAATATATAAACGACACCCTTTTTCGTCTCTCATAACTTCTAAGGAAGGTAACGCATGAATATTTGTTTTTCATCTCAATAAGGATGGCCTACGACTACGCTAAAAACATAGAAGAAAGACCTGATCCAGTGAAGGCGGACCTCAAAGGAAACCTTCCAAGCTGGCTGCAAGGCACGTTGTTGCGCAATGGGCCAGGCATATTCTCAGTGGGGGATACCACATACAACCACTGGTTCGATGGGATGGCCCTGATGCACAGCTTTACATTCAAAGATGGTGAGGTAATCTACAGAAGCAGATATTTACGTGGAGACACATACAAAGACAACATGGCAGCCAAAAGAATTGTTGTGTCTGAAATGGGGACAATGGCCTACCCGGACCCAGGCAAAAACGTCATATCTAGGGTGATCACCTTTCTTAACCACACGGTCCCAGACTTCACTGACAACTGTGGCAACAATTTCATTCGATATGGGAAGGATTATTATGCAACCTCTGAAACCAACTACATCCGCAAAGTAGATCCTGTGACTCTGGAGACTCAGGACAAGGTTGACTACATGAAATACCTTGCTGTGAACCTGGTGACATCCCATCCACATTACGATAAAGACGGAACAGCCTACAACATGGGAACTTCAATAGCGGAGAAGGGAAAGACTAAATACACCTTATTCAAGGTTCCAGACACTACTGCGGGagATAAGGCCAATGCTTCTCCAGCCTTGAAGAACCTTGAGGTGATCTGCACAGTGCCCTGCCGCTCCCTCCTCAGCCCCAGCTACTACCACAGCTTCGGCATGACTGACAACTACTTCATCTTCATTGAGCAGCCATTCAAACTGGACATCCTCAAGATGGCCACAGCATACATGAGAGGGGTCAACTGGGCTAGTTGTCTTAAGTTTTGCCCTGAGGAAAATACCCTGATTCACCTGATCGATAGAAAGACAGGCAAAGAAGTGGGCATAAAGTACTACACAGAGGCAATGATAGTGTACCATCACGTGAATGCCTTTGAAGAGGATGGTCATGTCATCTTTGATGTTATCGCCTATGAAGATCCCAGCTTATACAACATGTTCTACCTAAATGTGTTAAAAGAACAATCAAAGACCTCCGCAATGTCTGTGCCAAAGTGCAAAAGATTTGCCCTTCCTGTACAGACTGACAAGGGGATTGATGTAGGAGATGATATGGTGAAACTCCAATACACAACAGCCAGCgctgtgaaagagaaagagggtaaACTACTCTGCCAGCCAGAGGTGCTTTGTGACAGTGTGGAACTACCCAGGATCAATTATGACTTCAATGGCAAGAAGTACAGATTTGTCTACATGACTTGTGTTGCAATGACAGCAGTGGCAACTAAGATCATGAAGTTGGACATTGAGACAAAGGAGAGGACTGAATGGAGTGAGGAGAACTGCTGGCCATCAGAGCCTGTGTTCATTCCAAGACCCaacggagaaggagaggatgatgGTGTGGTCTTGACAACAGTCATCAACTCCAATCCAGGGGAATCTGGCTTCATCTTGGTGCTGGATGCAAAGTCTTTCAAGGAGGTAGCTCGAGCATATATGAATGCAGAGCTTCACATGGACATGCATGGATACTTCATCCCAATGGAAAATTAGTATGACAAAGAAATGATTTACTCCAAGAGTAGCCTACTACCCTCCACAAAGAAATAGACACTATGGGAAACGATAGGGATAGTATTAGATACTTTAAATACCAAAGTGCCTTGTAAATGTTTTCTTAACAATGTCCCAGTGCTAATATTGCTACATTT

Function

symbol description
bcmo1 beta-carotene 15,15'-dioxygenase

NR:

description
beta,beta-carotene 15,15'-dioxygenase-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0004497 monooxygenase activity molecular_function

KEGG:

id description
K00515 BCMO1, BCDO1; beta-carotene 15,15'-dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980738.1 False 2040 mRNA 0.43 12 66406013 66418871
XM_036980739.1 False 2020 mRNA 0.43 12 66406013 66418872
XM_036980741.1 False 2117 mRNA 0.43 12 66406013 66438607
XM_036980740.1 True 1813 mRNA 0.45 11 66406313 66415694

Neighbor

gene id symbol gene type direction distance location
LOC110526384 LOC106587189 coding downstream 104 66401753 ~ 66405909 (-)
LOC110526383 LOC106587190 coding downstream 7594 66360855 ~ 66398419 (-)
LOC110525045 LOC106562113 coding downstream 46898 66355784 ~ 66359115 (-)
usp47 LOC106587191 coding downstream 51137 66332673 ~ 66354876 (-)
LOC110526379 LOC106587193 coding downstream 79455 66277162 ~ 66326558 (-)
LOC110526385 LOC101448035 coding upstream 9637 66448244 ~ 66452652 (-)
LOC118964921 LOC106587186 coding upstream 46673 66485280 ~ 66488027 (-)
LOC110526387 LOC106587187 coding upstream 61389 66499996 ~ 66505055 (-)
LOC110526397 LOC106562084 coding upstream 365751 66804358 ~ 66819558 (-)
LOC110526396 LOC106562084 coding upstream 388647 66827254 ~ 66872098 (-)
G536290 NA non-coding downstream 76704 66328602 ~ 66329309 (-)
G536288 NA non-coding downstream 78605 66327184 ~ 66327408 (-)
G536717 NA non-coding upstream 131400 66570007 ~ 66570347 (-)
G536721 NA non-coding upstream 134658 66573265 ~ 66573486 (-)
G536726 NA non-coding upstream 144010 66582617 ~ 66586669 (-)
G536735 NA non-coding upstream 162847 66601454 ~ 66602161 (-)
G536739 NA non-coding upstream 164606 66603213 ~ 66604041 (-)
G536183 NA other downstream 129724 66262486 ~ 66276289 (-)
LOC110526365 LOC106587205 other downstream 780041 65600097 ~ 65765382 (-)
G534603 NA other downstream 1520481 64855495 ~ 64895099 (-)
G534349 NA other downstream 1791217 64578798 ~ 64614796 (-)
G536630 LOC106562092 other upstream 110760 66549367 ~ 66549974 (-)
G538277 NA other upstream 1703644 68142251 ~ 68144907 (-)
G538460 LOC106587433 other upstream 2071708 68510315 ~ 68516681 (-)
LOC110526447 LOC106587408 other upstream 2368806 68807413 ~ 68816777 (-)

Expression


Co-expression Network