LOC110526385 (LOC101448035)


Basic Information

Item Value
gene id LOC110526385
gene name LOC101448035
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66448244 ~ 66452652 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607327.2
AATTTTACCCCTAGACTATTGTCGTCAAAGATATAGACGGACCCGTCATAGTCTAGTCTGATATAAGCTATTCTAGTTGATAAGGGACCACTGTACCACATAACAGCCGATAGCATCAGTTATTAAGGCTATGTCTCAACTCCTCATCGGCAAGAACGGGACTGAATCACCCGAACCTGTCAAAGCAGAAGTAACAGGATGTGTCCCCGAGTGGCTACAAGGGACATTGCTGCGCAATGGGCCTGGTCTCTTTAAAGTGGGAGACACTGAATACAACCACTGGTTTGATGGCATGGCCTTAATTCATAGTTTCACCTTCAAAGATGGTGAGGTGTACTACAGGAGTAAATTCCTGAGGAGTGACACCTTCAAGAAAAACACTCAGGCAAACAAGATTGTTGTTTCAGAATTTGGGACAATGATCTATCCCGATCCCtgcaaaaacatattttcaaaAGCCTTCTCCTACCTTCTCGCTGCCATCCCTGACTTCACAGATAACAACCTGATAAACATCATTAGATATGGGGAGGACTACTATGCCTCATCAGAAGTCAACTACATGAATCAAATTGACCCAATTACCCTGGATGTAATTGGAAAGATGAACTACAGGAATCACATTGCTCTGAACTTGGCGACTGCACACCCTCACTACGACGATGAGGGAAACACCTATAACATGGGAACTGCCCTCATGAGGTTTGGCATGCCCAACTATGTCATCTTCAAGGTTCCAGTAAATGCATCAGATAAGGAGCATAAGAAGCCTGCCCTGCGGAAGGTGAAGCAGGTCTGCAATATACCGTTTCGTTCTACCCTCTTCCCCAGCTACTTCCACAGCTTCGGCATGACAGAGAATTACATAATCTTTGTCGAGCAGCCATTCAAACTGGACATCGTCAGACTGGCCACAGCTATATTTAGAAGCGTCAACTGGGCCAGCTGCCTCAAATACGACAAAGAGGACATTACTCTGATCCACCTGGTCGACAAGAAGACTGGGAAGGCTGTGTCCACCAAGTTCTACACCGATGCCCTGGTGGTTTTCCACCATATCAACGCCTACGAGGACGACGGCCATGTAGTGTTTGACATGATCACCTACAAAGACAGCAATCTGTATGAAATGTTCTACTTAGTGAACCTGAGAAAGGAAACGCATGAATTCATTGAGACCAACAAGGTCAACTTCTCCCCACCAATCTGCCAGAGATTTGTCTTGCCTCTCACTGTTGACAAGGATGCTCCAAATGGAAATGTGGTGAGGCTCAAAGACACAACAGCCAAAGCAGTGATGCAGAGAGATGGCTCACTGTATTGCCTGCCTGAAACAATATTTGAAGGTTTGGAGTTGCCAGGGATGAACTACAAATTCAATGGCAAGAAGTACCGTTATTTCTATGGCTCAAGAGTGGAGTGGACTCCACACCCAAATAAGATTGGGAAGGTGGACATCGTGACCAGAAAGTACATTGAGTGGACAGAGGAGGACTGCTACCCCTCTGAGCCTGTGTTTGTTGCTTCACCAGGAGCTGTGGAGGAGGATGACGGAGTCATTTTGTCCTCAGTCGTCTCACTCAATCCAAAGATATCCCCCTTCATGCTTGTCCTTAATGCCAAAACCTTTGAGGTAATTGCTCGTGCCTCAATTGACGCCAGCGTTCACATGGATCTGCATGGACACTTCATTCCCACACAGAGCACCAACTGAAATAGCCAGCAGAGGGCAGGATTGTACCATAACATTGTAGAGGGCAAAGTATTGTTCCCAACCATGGAAAGTCAATGTCTGTGCCCCCATGGAAATTCAATGAGCATAATAAACAAAAATTCCCATTAAAATCATTCTGTTTAAAGTTGA

Function

NR:

description
beta,beta-carotene 15,15'-dioxygenase-like

GO: NA

KEGG:

id description
K00515 BCMO1, BCDO1; beta-carotene 15,15'-dioxygenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607327.2 True 1864 mRNA 0.45 11 66448244 66452652

Neighbor

gene id symbol gene type direction distance location
bco1 bcmo1 coding downstream 9637 66406013 ~ 66438607 (-)
LOC110526384 LOC106587189 coding downstream 42335 66401753 ~ 66405909 (-)
LOC110526383 LOC106587190 coding downstream 49825 66360855 ~ 66398419 (-)
LOC110525045 LOC106562113 coding downstream 89129 66355784 ~ 66359115 (-)
usp47 LOC106587191 coding downstream 93368 66332673 ~ 66354876 (-)
LOC118964921 LOC106587186 coding upstream 32628 66485280 ~ 66488027 (-)
LOC110526387 LOC106587187 coding upstream 47344 66499996 ~ 66505055 (-)
LOC110526397 LOC106562084 coding upstream 351706 66804358 ~ 66819558 (-)
LOC110526396 LOC106562084 coding upstream 374602 66827254 ~ 66872098 (-)
LOC110526398 LOC106562084 coding upstream 470305 66922957 ~ 66971031 (-)
G536290 NA non-coding downstream 118935 66328602 ~ 66329309 (-)
G536288 NA non-coding downstream 120836 66327184 ~ 66327408 (-)
LOC110526379 LOC106587193 non-coding downstream 166625 66277162 ~ 66326558 (-)
G536717 NA non-coding upstream 117355 66570007 ~ 66570347 (-)
G536721 NA non-coding upstream 120613 66573265 ~ 66573486 (-)
G536726 NA non-coding upstream 129965 66582617 ~ 66586669 (-)
G536735 NA non-coding upstream 148802 66601454 ~ 66602161 (-)
G536739 NA non-coding upstream 150561 66603213 ~ 66604041 (-)
G536183 NA other downstream 171955 66262486 ~ 66276289 (-)
LOC110526365 LOC106587205 other downstream 822272 65600097 ~ 65765382 (-)
G534603 NA other downstream 1562712 64855495 ~ 64895099 (-)
G534349 NA other downstream 1833448 64578798 ~ 64614796 (-)
G536630 LOC106562092 other upstream 96715 66549367 ~ 66549974 (-)
G538277 NA other upstream 1689599 68142251 ~ 68144907 (-)
G538460 LOC106587433 other upstream 2057663 68510315 ~ 68516681 (-)
LOC110526447 LOC106587408 other upstream 2354761 68807413 ~ 68816777 (-)

Expression


Co-expression Network