LOC110526389 (LOC106587184)


Basic Information

Item Value
gene id LOC110526389
gene name LOC106587184
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66575490 ~ 66591573 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607336.2
CTTGCGTCAGACTGATGCCCTCGAACGCGTTGTGACGTCATTGcgtacagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggcgttGATCTTGCTTGCTGCACGAGGAAGATGGCTGACGTTACAGAGGTGCACTCAAATGAACTCAGCAAAAAtgAGCTGAAGAGGCGAATGAAAGCTGAGAAGAAGGCATCTGAGAAGGAAGCCAAAGTCAAAGAGCAGGTTGAGCAGAAGGAGACCAATGACCAGGCAGATCAGAATGCAGATGAGGAGACCCTGGACCCTAACCAATACTTTAAGATCCGCACTCAAGCCATCCAGGCTCTGAAGGGCACAGCAGAGGACCCATACCCTCACAAGTACAATGTAGATCTGTCGCTCACAGAGTTCATTGAGAAATACAACCACCTACAGCCTGGAGACCAGCTAACAGACATTGTCCTCAATGTATCAGGTCGTGTCCATGCCAAGAGAGAGTCTGGGGCCAAGTTAATCTTCTATGACTTGCGAGGGGAAGGCGTCAAGCTGCAAGTTATGGCAACCAACAGGAGCTACAAGTCTGAGGAGGAGTTTGTACGCATCAACAACAAGCTGCGGCGTGGTGACATCATTGGTGTTCGTGGTAATCCAGGGAAGACCAAAAAGGGCGAACTGAGCATCATTCCCATAGAGATGACCCTGCTTTcaccttgcttgcacatgctgcCCCACCTGCACTTTGGTCTCAAGGACAAGGAAACACGATTCCGTCAGCGATACCTGGATCTGATTCTCAATGACTATGTGAGGCAGAAGTTTGTAACACGTGCCAAGATCATCACTTACCTCCGCAGCTTCCTGGACGGGCTGGGATTCCTGGAGATTGAGACGCCCATGATGAACCTGATTCCTGGTGGGGCTGTGGCCAAACCCTTTGTGACCTACCATAATGACCTAGACATGAACCTTTACATGAGGATTGCTCCTGAGCTCTACCACAAGATGCTTGTGGTTGGGGGGTTTGACAGAGTGTATGAAATTGGACGGCAGTTCAGAAACGAAGGCATTGACCTCACCCACAATCCAGAGTTCACCACCTGCGAATTCTATATGGCCTATGCAGATTACTATGACTTGATGGATATCACAGAGAAGCTTCTCTCGGGAATGGTCAAGCACATCACTGGAGAGTACAAAGTGAAGTATCATCCAGAGGGTCCAGAGGGCCCGACCTATGAGATCGACTTCACTCCTCCCTTCAGGAGGGTCAGCATGACGCACGACCTGGAGAAGGAGATGGGCGTCAAGTTCCCAGCTGCTGACACCTACGACAGTGACGAGACCCGTACATTCTTTGATGAACTGTGTGCCCAGAAAGGAGTGGAGTGCCCTCCTCCTAGAACTACTGCCCGCCTCCTTGACAAGTTGGTGGGAGATTTCCTGGAAGTCACGTGTATCAACCCCACGTTCATCTGTGACCACCCACAGATCATGAGCCCCCTGGCCAAATGGCACCGGTCAGAGAAAGGCCTGACGGAGCGTTTTGAGCTGTTTGTATTGAAGAAGGAGATCTGTAATGCCTACACTGAGTTGAACGACCCTATCAGACAGAGGGAGCTCTTTGAGCAACAGGCTAAGGCCAAGGCAGAGGGTGATGACGAGAGCATGTCCGTTGATGAGACTTTCTGCACGGCACTAGAGTATGGCCTGCCACCAACTGCTGGCTGGGGCATGGGCCTTGACCGTCTTACCATGTTCCTCACAGACTCCAACAACATTAAGGAGGTACTGTTCTTCCCTGCCATGAAGCCTGATGACAACAAGACAGCCCCTCTCACAGAGGGCACCTCTGTGTAGTATTGTGACCTCGCCTGCTGGCAGATCTCTGCAGGGGTTGGCATGGTGATGAAGCCTGGGTAAATAATCTGATTGGTCTGTTGGTCTCACTGTGTGTTCCGGTGGTGTTGAATGTTATTCATTTTATCATATGGTTTGAATCTTACAATCTGCATTATTAAGGGAAATAAGTTACTTTTTACAATTATTTTTCCACCTTTACATAGTTGAAACATTCAATTGTGTGCTGTTTTGCCTTGTATTACTTTGCGGTTGTCTCTTTTCTGTCTTCCCTCATTAGAGTGTTGGACATCCAAGCCCAATGTAATGTCAGTGAATGAGGGTTTCTGGACatgtttgtgttgtgttattgtaTGCCATACAGTCAACGACTTATTTTTACAAATTCTATGTTCACCCATACAACTGCCATTGTCACaaaaataaaatgacaaaagTGAATCTGTATTCC
>XM_036980750.1
CGTCATTGcgtacagttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttggcgttGATCTTGCTTGCTGCACGAGGAAGATGGCTGACGTTACAGAGGTGCACTCAAATGAACTCAGCAAAAAgtCTGGTCATTGACTGGTGTAGCACAGTAGGTCATCCTGCTTCACCATGCTGACTCTGGTGGTCAGAACTGCCAGGCACCAGGTGTGCCAAGCCTTTGGGGTCAGGGCTCAGGGGGTAAAGTTCGCTCTCCCCAGTGCAGCGTCAGTCCCAGCTTTAATTCAGGGGAATCGCTGGCGAGGTGACAAAAGtgAGCTGAAGAGGCGAATGAAAGCTGAGAAGAAGGCATCTGAGAAGGAAGCCAAAGTCAAAGAGCAGGTTGAGCAGAAGGAGACCAATGACCAGGCAGATCAGAATGCAGATGAGGAGACCCTGGACCCTAACCAATACTTTAAGATCCGCACTCAAGCCATCCAGGCTCTGAAGGGCACAGCAGAGGACCCATACCCTCACAAGTACAATGTAGATCTGTCGCTCACAGAGTTCATTGAGAAATACAACCACCTACAGCCTGGAGACCAGCTAACAGACATTGTCCTCAATGTATCAGGTCGTGTCCATGCCAAGAGAGAGTCTGGGGCCAAGTTAATCTTCTATGACTTGCGAGGGGAAGGCGTCAAGCTGCAAGTTATGGCAACCAACAGGAGCTACAAGTCTGAGGAGGAGTTTGTACGCATCAACAACAAGCTGCGGCGTGGTGACATCATTGGTGTTCGTGGTAATCCAGGGAAGACCAAAAAGGGCGAACTGAGCATCATTCCCATAGAGATGACCCTGCTTTcaccttgcttgcacatgctgcCCCACCTGCACTTTGGTCTCAAGGACAAGGAAACACGATTCCGTCAGCGATACCTGGATCTGATTCTCAATGACTATGTGAGGCAGAAGTTTGTAACACGTGCCAAGATCATCACTTACCTCCGCAGCTTCCTGGACGGGCTGGGATTCCTGGAGATTGAGACGCCCATGATGAACCTGATTCCTGGTGGGGCTGTGGCCAAACCCTTTGTGACCTACCATAATGACCTAGACATGAACCTTTACATGAGGATTGCTCCTGAGCTCTACCACAAGATGCTTGTGGTTGGGGGGTTTGACAGAGTGTATGAAATTGGACGGCAGTTCAGAAACGAAGGCATTGACCTCACCCACAATCCAGAGTTCACCACCTGCGAATTCTATATGGCCTATGCAGATTACTATGACTTGATGGATATCACAGAGAAGCTTCTCTCGGGAATGGTCAAGCACATCACTGGAGAGTACAAAGTGAAGTATCATCCAGAGGGTCCAGAGGGCCCGACCTATGAGATCGACTTCACTCCTCCCTTCAGGAGGGTCAGCATGACGCACGACCTGGAGAAGGAGATGGGCGTCAAGTTCCCAGCTGCTGACACCTACGACAGTGACGAGACCCGTACATTCTTTGATGAACTGTGTGCCCAGAAAGGAGTGGAGTGCCCTCCTCCTAGAACTACTGCCCGCCTCCTTGACAAGTTGGTGGGAGATTTCCTGGAAGTCACGTGTATCAACCCCACGTTCATCTGTGACCACCCACAGATCATGAGCCCCCTGGCCAAATGGCACCGGTCAGAGAAAGGCCTGACGGAGCGTTTTGAGCTGTTTGTATTGAAGAAGGAGATCTGTAATGCCTACACTGAGTTGAACGACCCTATCAGACAGAGGGAGCTCTTTGAGCAACAGGCTAAGGCCAAGGCAGAGGGTGATGACGAGAGCATGTCCGTTGATGAGACTTTCTGCACGGCACTAGAGTATGGCCTGCCACCAACTGCTGGCTGGGGCATGGGCCTTGACCGTCTTACCATGTTCCTCACAGACTCCAACAACATTAAGGAGGTACTGTTCTTCCCTGCCATGAAGCCTGATGACAACAAGACAGCCCCTCTCACAGAGGGCACCTCTGTGTAGTATTGTGACCTCGCCTGCTGGCAGATCTCTGCAGGGGTTGGCATGGTGATGAAGCCTGGGTAAATAATCTGATTGGTCTGTTGGTCTCACTGTGTGTTCCGGTGGTGTTGAATGTTATTCATTTTATCATATGGTTTGAATCTTACAATCTGCATTATTAAGGGAAATAAGTTACTTTTTACAATTATTTTTCCACCTTTACATAGTTGAAACATTCAATTGTGTGCTGTTTTGCCTTGTATTACTTTGCGGTTGTCTCTTTTCTGTCTTCCCTCATTAGAGTGTTGGACATCCAAGCCCAATGTAATGTCAGTGAATGAGGGTTTCTGGACatgtttgtgttgtgttattgtaTGCCATACAGTCAACGACTTATTTTTACAAATTCTATGTTCACCCATACAACTGCCATTGTCACaaaaataaaatgacaaaagTGAATCTGTATTCC

Function

NR:

description
lysine--tRNA ligase-like isoform X1

GO:

id name namespace
GO:0006430 lysyl-tRNA aminoacylation biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0004824 lysine-tRNA ligase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K04567 KARS, lysS; lysyl-tRNA synthetase, class II

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607336.2 False 2289 mRNA 0.48 14 66575490 66591573
XM_036980750.1 True 2443 mRNA 0.49 15 66575525 66591573

Neighbor

gene id symbol gene type direction distance location
LOC110526388 LOC106587185 coding upstream 10137 66506911 ~ 66565353 (+)
pkd1l2a LOC106587186 coding upstream 75490 66460723 ~ 66500000 (+)
dkk3a LOC106562112 coding upstream 242936 66327731 ~ 66332554 (+)
LOC110526374 LOC100196685 coding upstream 477175 66085119 ~ 66098315 (+)
LOC110526373 LOC106587200 coding upstream 540109 65948419 ~ 66035381 (+)
LOC110526391 LOC106587183 coding downstream 1008 66592581 ~ 66596719 (+)
LOC110526390 LOC106587182 coding downstream 6205 66597778 ~ 66602137 (+)
LOC118965117 NA coding downstream 8646 66600219 ~ 66600295 (+)
LOC118965114 NA coding downstream 9364 66600937 ~ 66601020 (+)
LOC118965116 NA coding downstream 10112 66601685 ~ 66601769 (+)
G536394 NA non-coding upstream 1639 66573556 ~ 66573851 (+)
G536393 NA non-coding upstream 1994 66573241 ~ 66573496 (+)
G536392 NA non-coding upstream 3098 66572059 ~ 66572392 (+)
G536371 NA non-coding upstream 83027 66488565 ~ 66492463 (+)
G536348 NA non-coding upstream 126226 66447005 ~ 66449264 (+)
G536409 NA non-coding downstream 56984 66648557 ~ 66651510 (+)
G536585 NA non-coding downstream 336992 66928565 ~ 66932555 (+)
G536994 NA non-coding downstream 420598 67012171 ~ 67012394 (+)
G537000 NA non-coding downstream 445056 67036629 ~ 67036990 (+)
G537004 NA non-coding downstream 448787 67040360 ~ 67040589 (+)
G535150 LOC106587155 other upstream 726049 65847623 ~ 65849441 (+)
LOC110526356 LOC106587213 other upstream 1414160 65065380 ~ 65178884 (+)
G534653 NA other upstream 1457534 65113280 ~ 65169563 (+)
G534453 NA other upstream 1728386 64790322 ~ 64847104 (+)
LOC110526344 LOC106587225 other upstream 1799154 64769099 ~ 64781704 (+)
G536406 NA other downstream 11212 66602785 ~ 66604053 (+)
G536995 zfhx3 other downstream 421647 67013220 ~ 67018653 (+)
G537029 zfhx3 other downstream 512733 67104306 ~ 67104908 (+)
G537032 LOC106587324 other downstream 518103 67109676 ~ 67110628 (+)
G537606 NA other downstream 1162983 67754556 ~ 67756618 (+)

Expression


Co-expression Network