LOC110526391 (LOC106587183)


Basic Information

Item Value
gene id LOC110526391
gene name LOC106587183
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66592581 ~ 66596719 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607338.2
TTAGACTGAAGAAGATCTAACACTACCAACTATGCGAAAAAGCCATTAGTATCCTAAATATTATGTTGTGCATCTGTTACGCCTTGGGAGTATCCATATAAGGAAAAACCTTATTGGCAAATACGGTTCAACTTTCACAAAGTCCTGCTGAAAAGCCGCTTCTATTTCATGTCGAGAGCGCGCAAAGGGTGATGGTGCGCGTTCCACTCAGTCAATTGCATGTGTAATCATTTCGGCCGACACTGAAGATGGCGATGAGAGTAGCGTTCCGGTGCCTTACTGCAAACTTTTCCCCAGTACTGATTCAGCGTTCACGACCTGTACAGATATCCGCAAATCGGCTCTTATGGAAGGCCAACCCCGCACAGTCACTGAGCACCGCCTCACGACTGTCCACAGCCCTGAAATTCACAGACAAGCACGAGTGGGTACGAGTAGAGGGAGGAATTGGCACAGTTGGCATCAGCAAATTTGCTCAGGAAGCATTAGGTGATGTGGTATATTGTGGACTCCCTGAGGTGGGGCAAAAACTTGAACAAATGGAGGAGTTTGGTGCTTTGGAAAGTGTGAAGGCGGCTAGTGAGCTGTACTCTCCGCTGACTGGAGAGGTAACTGAAATCAACACAGAGCTGGCAGTCAACCCTGGACTAGTGAATAAATCCTGCTACGAAGTGGGCTGGCTAATTAAGATGACTATTGACAACCCTGCAGAACTTGATGGCCTCATGGACGATTGCTCCTATGAGAAATTTATCAAATCACTTGATGAGTAGACTGCTCGACTCTCCATgttctttttttaaaatgttatttttaatgATGATTACAGGTCTTTCACACTAATCCTATCTGGACTGGCTGTAAAATCTCAGCTAAAAATATTATATAAAGTAGCCATATTTATTTTGACTGTAATTGTTTAATCACCAAGATAACCTAAATTATAATTAAAAATGCTCACCTAGGTGCTTTAGCTGATTAAACCACAAGACAACCTGAAGGGTTTGTTCCCATGTCCTGTTGGCACAATGATAAATCCTGTTGGCACAAAAATAAGAGTTGATTACTTCATGTGCTTGGTTTGAACTGAAAAAAATGCAGAGAAGTGGCAACAGGTTGGAAAGTGATCGGAAATGAGAAGTCAGATACAATAAATACAATCCATTGTTTTTTCATTATGGCTTTTCTATTCCATCTGATGGGAAGGATGGAATACAGTACTATTCACTTGCTTTACATAAACCACCTTAAGTCATTATCTAAGTCTAAACTTAATTTGATGTCTGGCAATGCAAGACTAGTCAAAACAAAACCTTGGCTGGTAGCCTGGCACTTCCAAAGACTCCCACACTTGTAGATTGACATTTTTCAGCAAGATCACCTTCTTTAGAACAAAAGACTACAGCACAAATTAAGCAAGAATCAAATCTATTTGTGATATTTTCCTATTTTGAGGTAACATCTGACATCAGGAATATGTGGATAATATTGcatttgttgtgttgtttgtacACACTGCCTGTGATTGTTGACATGGCTCACTAATATCTACTGCtatacatatcattcttagtatatgtTTTTGGTGTAGGCCTATATATGcatagattgcatttggattatTCGTTGTGTTATTTGGGTTACCTGGATTTGTTCTGACATTCATATATTGTTTTTgattatttgtgtacttgtttggcattgttaggagctaggaacccaagcattttgctgcacctgctgtttgtgaccaataaaatttgatttgatatgct
>XM_036980752.1
TTTTATGGAGTTCCAATGTACTTTTGTGATTCCCTGACCAGCCTGTCGAACAACGGTCCCGCGTTAGCCCTGAAATTCACAGACAAGCACGAGTGGGTACGAGTAGAGGGAGGAATTGGCACAGTTGGCATCAGCAAATTTGCTCAGGAAGCATTAGGTGATGTGGTATATTGTGGACTCCCTGAGGTGGGGCAAAAACTTGAACAAATGGAGGAGTTTGGTGCTTTGGAAAGTGTGAAGGCGGCTAGTGAGCTGTACTCTCCGCTGACTGGAGAGGTAACTGAAATCAACACAGAGCTGGCAGTCAACCCTGGACTAGTGAATAAATCCTGCTACGAAGTGGGCTGGCTAATTAAGATGACTATTGACAACCCTGCAGAACTTGATGGCCTCATGGACGATTGCTCCTATGAGAAATTTATCAAATCACTTGATGAGTAGACTGCTCGACTCTCCATgttctttttttaaaatgttatttttaatgATGATTACAGGTCTTTCACACTAATCCTATCTGGACTGGCTGTAAAATCTCAGCTAAAAATATTATATAAAGTAGCCATATTTATTTTGACTGTAATTGTTTAATCACCAAGATAACCTAAATTATAATTAAAAATGCTCACCTAGGTGCTTTAGCTGATTAAACCACAAGACAACCTGAAGGGTTTGTTCCCATGTCCTGTTGGCACAATGATAAATCCTGTTGGCACAAAAATAAGAGTTGATTACTTCATGTGCTTGGTTTGAACTGAAAAAAATGCAGAGAAGTGGCAACAGGTTGGAAAGTGATCGGAAATGAGAAGTCAGATACAATAAATACAATCCATTGTTTTTTCATTATGGCTTTTCTATTCCATCTGATGGGAAGGATGGAATACAGTACTATTCACTTGCTTTACATAAACCACCTTAAGTCATTATCTAAGTCTAAACTTAATTTGATGTCTGGCAATGCAAGACTAGTCAAAACAAAACCTTGGCTGGTAGCCTGGCACTTCCAAAGACTCCCACACTTGTAGATTGACATTTTTCAGCAAGATCACCTTCTTTAGAACAAAAGACTACAGCACAAATTAAGCAAGAATCAAATCTATTTGTGATATTTTCCTATTTTGAGGTAACATCTGACATCAGGAATATGTGGATAATATTGcatttgttgtgttgtttgtacACACTGCCTGTGATTGTTGACATGGCTCACTAATATCTACTGCtatacatatcattcttagtatatgtTTTTGGTGTAGGCCTATATATGcatagattgcatttggattatTCGTTGTGTTATTTGGGTTACCTGGATTTGTTCTGACATTCATATATTGTTTTTgattatttgtgtacttgtttggcattgttaggagctaggaacccaagcattttgctgcacctgctgtttgtgaccaataaaatttgatttgatatgct

Function

NR:

description
glycine cleavage system H protein, mitochondrial-like

GO:

id name namespace
GO:0019464 glycine decarboxylation via glycine cleavage system biological_process
GO:0005960 glycine cleavage complex cellular_component

KEGG:

id description
K02437 gcvH, GCSH; glycine cleavage system H protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607338.2 False 1775 mRNA 0.40 5 66592581 66596719
XM_036980752.1 True 1443 mRNA 0.38 5 66593339 66596719

Neighbor

gene id symbol gene type direction distance location
LOC110526389 LOC106587184 coding upstream 1008 66575490 ~ 66591573 (+)
LOC110526388 LOC106587185 coding upstream 27228 66506911 ~ 66565353 (+)
pkd1l2a LOC106587186 coding upstream 92581 66460723 ~ 66500000 (+)
dkk3a LOC106562112 coding upstream 260027 66327731 ~ 66332554 (+)
LOC110526374 LOC100196685 coding upstream 494266 66085119 ~ 66098315 (+)
LOC110526390 LOC106587182 coding downstream 1059 66597778 ~ 66602137 (+)
LOC118965117 NA coding downstream 3500 66600219 ~ 66600295 (+)
LOC118965114 NA coding downstream 4218 66600937 ~ 66601020 (+)
LOC118965116 NA coding downstream 4966 66601685 ~ 66601769 (+)
LOC110526392 LOC106587181 coding downstream 12511 66609230 ~ 66647423 (+)
G536400 NA non-coding upstream 5464 66583358 ~ 66587117 (+)
G536394 NA non-coding upstream 18730 66573556 ~ 66573851 (+)
G536393 NA non-coding upstream 19085 66573241 ~ 66573496 (+)
G536392 NA non-coding upstream 20189 66572059 ~ 66572392 (+)
G536371 NA non-coding upstream 100118 66488565 ~ 66492463 (+)
G536409 NA non-coding downstream 51838 66648557 ~ 66651510 (+)
G536585 NA non-coding downstream 331846 66928565 ~ 66932555 (+)
G536994 NA non-coding downstream 415452 67012171 ~ 67012394 (+)
G537000 NA non-coding downstream 439910 67036629 ~ 67036990 (+)
G537004 NA non-coding downstream 443641 67040360 ~ 67040589 (+)
G535150 LOC106587155 other upstream 743140 65847623 ~ 65849441 (+)
LOC110526356 LOC106587213 other upstream 1431251 65065380 ~ 65178884 (+)
G534653 NA other upstream 1474625 65113280 ~ 65169563 (+)
G534453 NA other upstream 1745477 64790322 ~ 64847104 (+)
LOC110526344 LOC106587225 other upstream 1816245 64769099 ~ 64781704 (+)
G536406 NA other downstream 6066 66602785 ~ 66604053 (+)
G536995 zfhx3 other downstream 416501 67013220 ~ 67018653 (+)
G537029 zfhx3 other downstream 507587 67104306 ~ 67104908 (+)
G537032 LOC106587324 other downstream 512957 67109676 ~ 67110628 (+)
G537606 NA other downstream 1157837 67754556 ~ 67756618 (+)

Expression


Co-expression Network