LOC110526392 (LOC106587181)


Basic Information

Item Value
gene id LOC110526392
gene name LOC106587181
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66609230 ~ 66647423 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607339.2
CACTTTCCCTCCACTGTTCCTGAGTTTCGGAAAATCAAGCAGTGTGTTGAAGGAAAGGTAACAACAAGTGTAAGTTCAGGGGACCACGTCAGGTACAGTACCTGTGTGGAGTTTGAAGAGAAGGATGATTGGGAGCACACACTTTTTTAACCTGTTTCTGATGCTCATGGACAACTTTTTCATGAagaacacatgaaaacacacttTGGCTGGTCCTGAATCGTAAATGACCCTCCACAGCTTTCTGGTCATCTAATCACGACTCCCCAACCTCCATCCAGCTCGGCCCACCCTGTCTGTTATCTCTGCAGACATTAAATTACACCTGCCTTCATCTCAAATACAGACCTCTGCGAGAACTCTTTTCCCTTTTGTAACATTCACTACCAAGTCCAAGGATCCATTCTTCTCTTCTATGTATCTAACTCTGTGAGATTTCAGTGCCTCGCTCGGTTTGAATCCCTTAGCCATCCCTAGTAGTTCCCATTACTCTGAGCTCTCGGCAGCACCCACCCTCTCTTGCTCCTTACTGGTTGACTCCTTGGGTCCTGAGCCAGGATGAATGACGTCCAGGATGCTACCTCTCCAGGGGCCGCTCTAGGTGGCCCTGTCGCCTGCGTCTCCAAAGTGGAACTGCGCGTCGCCTGCAAGGCCCTGCTGGACCGAGACACATTGAACAAGTCTGACCCATGTGTCATACTCATGGTGCAGAACCAGGGACAGTGGACAGAGCTTGACAGGACAGAGGTGATCAAGAGCAACCTGCACCCGGTCTTTGCCAAGGTCTTCACCCTGGACTACTACTTTGAGGAAGTGCAGAAGCTGCGGTTCGAGGTCTACGACATCCATGGCACCCACAGTATTGGCACCCGCGACGACGACTTCCTGGGCGGAGTGGAGTGTACGCTCGGCCAGATTGTAGCCCAGAAGAAGATGGTGAAGCCTTTATTCCTAAAGTATGCGAAGTACGCTGGGAAATCCACCATCACGGTACACGCTGAAGAAATTTCTGGCAACAATGGATATGTTGAACTGTTCTTCTGTGCCAAGAAACTGGATGATAAGGATCTCTTCAGTAAGTCAGACCCCTTTTTGGAAATATATCGAATTAACGATGATGGGACGGAACAGCTCGTTCACAGAACTGAGGTAATCAAAAACAACCTGAACCCCGTGTGGGAGCCCTTTAAagtgtctctcatctctctgtgtaGCTGTGATGAGGACAGGAAGCTCAAGTGCCTAGTCTGGGATTCTGACTCCAGGGGAAAACACGACTTCATCGGGGAGTTTTATGCCACCTTCCGAGAAATGCAGAAAATTGGCGGTGGAAGCAAGGTCACATGGGATTGCATGAATCCAAAGTACAAACTGAAGAAAAAGAACTACAAGAACTCTGGGGTGGTCATCCTCAGTGATCTCAAGCTTCACAGAGTGTATTCCTTCCTCGACTACATCATGGGAGGATGCCAAATCCACTTTACAGTGGCCATTGACTTCACAGCCTCCAACGGAGACCCACGGAACAGCTGCTCCCTACACTACATCAACCCGTACCAGCCCAATGAGTATCTGAAGGCTTTGATAGCAGTGGGGGAGATCTGTCAGGATTATGACAGTGACAAAAGATTTTCCGCCTTGGGATTTGGTGCCAGAATTCCACCCAATTATGAGGTGTCCCATGACTTTGCCATCAATTTCAACCCAGAGGACGATGAATGTGAAGaGATTCAGGGGGTGGTGGAGGCCTACCAGAACTGCCTGCCTAAGATCCAGCTGTATGGTCCCACCAACGTCTCTCCCATCATCAGCAGGATAGCCAAGCTGTCAGCAGGAGAGGAGACCATCAAAGATGCCTCACGTTACCACATCCTGCTGATCCTCACAGACGGCGTGGTGACAGACATGGCAGACACACGCGAGGCCATCGTGCGTGCCTCCTACCAGCCCCTGTCCATCATCATCGTTGGCGTGGGCAATGCAGACTTCACAGACATGCAGATCCTGGACGGGGATGACGGGGTGCTGCGCTCACCCAAAGGAGAGCCCGTCCTCAGGGACATTGTGCAGTTTGTGCCCTTCAGAGACTTCAAAACGGCCTCGCCTGCTGCCTTGGCCAAATGTGTCCTTGCGGAGGTGCCCAACCAGGTGGTGGAGTACTACAGTCACAAGGCCATCTGCCCCATGCCGCCCATCCCATCATGTGACTCTCCCACCTCCCTTGCCAACACCCCTACAGAATCACTGCCAGCAGTGGGGACCACGGCCTGACCACATctcagtccagagagagagagggtgcagATCGCTGCTCTGGaccaagaaccatggtcattaaTATTAGTGTTGTTGTCATTCCTTTTTCATTCGTACAGTGTTCACACACAGACTGGAACAGAAACCTTTGGATTGTTTTCTCTCTCCGTTCGGATCATGTCCCTCTGCCTGGCTGTGCATCCATCTGCCTGTTCAGCATGATGCTGGAGGATGCATGCAGGTGAATCCCTCCCAAAGTTGATCAACTATGGTCACAGGCTCTCTGTCCCCTTCTGCCCTGATACTGGCATCTTGGCCCTCAGCTGATTTTTTTATGACTTTCAAGGCTCTCCAAGGCTTCAGTCTGCTTCTCTTGTGTGTCCATTTtgctctgctgtgtctctctgtcttactGCCCATCACTGGTATTGTCTGAAGAGCCTGTCAACTGAAGGATTGAGGGAGGGGGAATCTAAACATATCAAACCACATGAGTCTTTCAATTATGAGGAAAGAGATTTAGGTAACACTTTCTTTTACTTTTCCTAAATGATGCCTGCACAGAAAAGGTAGTCATATACAGTACGGGTcaaaaaatttggacacacctgctcattcaagggtttttctttatttttactattttctacattgtagaataatagcaaagacatcaaaactttgaaataacacatggaatcatgaaa
>XM_021607340.2
GTTGAAGGAAAGGTAACAACAAGTGTAAGTTCAGGGGACCACGTCAGGTAGGAACAAGCAGCAAGTGTTTGGATGTATTATTTTGAAGCATGTGATGCAAGTTTCTGAATGATTGAGGTACAGTACCTGTGTGGAGTTTGAAGAGAAGGATGATTGGGAGCACACACTTTTTTAACCTGTTTCTGATGCTCATGGACAACTTTTTCATGAagaacacatgaaaacacacttTGGCTGGTCCTGAATCGTAAATGACCCTCCACAGCTTTCTGGTCATCTAATCACGACTCCCCAACCTCCATCCAGCTCGGCCCACCCTGTCTGTTATCTCTGCAGACATTAAATTACACCTGCCTTCATCTCAAATACAGACCTCTGCGAGAACTCTTTTCCCTTTTGTAACATTCACTACCAAGTCCAAGGATCCATTCTTCTCTTCTATGTATCTAACTCTGTGAGATTTCAGTGCCTCGCTCGGTTTGAATCCCTTAGCCATCCCTAGTAGTTCCCATTACTCTGAGCTCTCGGCAGCACCCACCCTCTCTTGCTCCTTACTGGTTGACTCCTTGGGTCCTGAGCCAGGATGAATGACGTCCAGGATGCTACCTCTCCAGGGGCCGCTCTAGGTGGCCCTGTCGCCTGCGTCTCCAAAGTGGAACTGCGCGTCGCCTGCAAGGCCCTGCTGGACCGAGACACATTGAACAAGTCTGACCCATGTGTCATACTCATGGTGCAGAACCAGGGACAGTGGACAGAGCTTGACAGGACAGAGGTGATCAAGAGCAACCTGCACCCGGTCTTTGCCAAGGTCTTCACCCTGGACTACTACTTTGAGGAAGTGCAGAAGCTGCGGTTCGAGGTCTACGACATCCATGGCACCCACAGTATTGGCACCCGCGACGACGACTTCCTGGGCGGAGTGGAGTGTACGCTCGGCCAGATTGTAGCCCAGAAGAAGATGGTGAAGCCTTTATTCCTAAAGTATGCGAAGTACGCTGGGAAATCCACCATCACGGTACACGCTGAAGAAATTTCTGGCAACAATGGATATGTTGAACTGTTCTTCTGTGCCAAGAAACTGGATGATAAGGATCTCTTCAGTAAGTCAGACCCCTTTTTGGAAATATATCGAATTAACGATGATGGGACGGAACAGCTCGTTCACAGAACTGAGGTAATCAAAAACAACCTGAACCCCGTGTGGGAGCCCTTTAAagtgtctctcatctctctgtgtaGCTGTGATGAGGACAGGAAGCTCAAGTGCCTAGTCTGGGATTCTGACTCCAGGGGAAAACACGACTTCATCGGGGAGTTTTATGCCACCTTCCGAGAAATGCAGAAAATTGGCGGTGGAAGCAAGGTCACATGGGATTGCATGAATCCAAAGTACAAACTGAAGAAAAAGAACTACAAGAACTCTGGGGTGGTCATCCTCAGTGATCTCAAGCTTCACAGAGTGTATTCCTTCCTCGACTACATCATGGGAGGATGCCAAATCCACTTTACAGTGGCCATTGACTTCACAGCCTCCAACGGAGACCCACGGAACAGCTGCTCCCTACACTACATCAACCCGTACCAGCCCAATGAGTATCTGAAGGCTTTGATAGCAGTGGGGGAGATCTGTCAGGATTATGACAGTGACAAAAGATTTTCCGCCTTGGGATTTGGTGCCAGAATTCCACCCAATTATGAGGTGTCCCATGACTTTGCCATCAATTTCAACCCAGAGGACGATGAATGTGAAGaGATTCAGGGGGTGGTGGAGGCCTACCAGAACTGCCTGCCTAAGATCCAGCTGTATGGTCCCACCAACGTCTCTCCCATCATCAGCAGGATAGCCAAGCTGTCAGCAGGAGAGGAGACCATCAAAGATGCCTCACGTTACCACATCCTGCTGATCCTCACAGACGGCGTGGTGACAGACATGGCAGACACACGCGAGGCCATCGTGCGTGCCTCCTACCAGCCCCTGTCCATCATCATCGTTGGCGTGGGCAATGCAGACTTCACAGACATGCAGATCCTGGACGGGGATGACGGGGTGCTGCGCTCACCCAAAGGAGAGCCCGTCCTCAGGGACATTGTGCAGTTTGTGCCCTTCAGAGACTTCAAAACGGCCTCGCCTGCTGCCTTGGCCAAATGTGTCCTTGCGGAGGTGCCCAACCAGGTGGTGGAGTACTACAGTCACAAGGCCATCTGCCCCATGCCGCCCATCCCATCATGTGACTCTCCCACCTCCCTTGCCAACACCCCTACAGAATCACTGCCAGCAGTGGGGACCACGGCCTGACCACATctcagtccagagagagagagggtgcagATCGCTGCTCTGGaccaagaaccatggtcattaaTATTAGTGTTGTTGTCATTCCTTTTTCATTCGTACAGTGTTCACACACAGACTGGAACAGAAACCTTTGGATTGTTTTCTCTCTCCGTTCGGATCATGTCCCTCTGCCTGGCTGTGCATCCATCTGCCTGTTCAGCATGATGCTGGAGGATGCATGCAGGTGAATCCCTCCCAAAGTTGATCAACTATGGTCACAGGCTCTCTGTCCCCTTCTGCCCTGATACTGGCATCTTGGCCCTCAGCTGATTTTTTTATGACTTTCAAGGCTCTCCAAGGCTTCAGTCTGCTTCTCTTGTGTGTCCATTTtgctctgctgtgtctctctgtcttactGCCCATCACTGGTATTGTCTGAAGAGCCTGTCAACTGAAGGATTGAGGGAGGGGGAATCTAAACATATCAAACCACATGAGTCTTTCAATTATGAGGAAAGAGATTTAGGTAACACTTTCTTTTACTTTTCCTAAATGATGCCTGCACAGAAAAGGTAGTCATATACAGTACGGGTcaaaaaatttggacacacctgctcattcaagggtttttctttatttttactattttctacattgtagaataatagcaaagacatcaaaactttgaaataacacatggaatcatgaaa

Function

NR:

description
copine-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607339.2 False 2963 mRNA 0.49 16 66609230 66647423
XM_021607340.2 True 2988 mRNA 0.49 16 66609275 66647423

Neighbor

gene id symbol gene type direction distance location
LOC110526390 LOC106587182 coding upstream 7093 66597778 ~ 66602137 (+)
LOC118965116 NA coding upstream 7461 66601685 ~ 66601769 (+)
LOC118965114 NA coding upstream 8210 66600937 ~ 66601020 (+)
LOC118965117 NA coding upstream 8935 66600219 ~ 66600295 (+)
LOC110526391 LOC106587183 coding upstream 12511 66592581 ~ 66596719 (+)
LOC110526947 LOC105029748 coding downstream 72385 66719808 ~ 66720441 (+)
LOC110526393 LOC106587180 coding downstream 101393 66748816 ~ 66753440 (+)
LOC110526948 LOC106562086 coding downstream 108907 66756330 ~ 66776332 (+)
LOC110526401 LOC106587347 coding downstream 880719 67528142 ~ 67544856 (+)
LOC110526949 mald3 coding downstream 996391 67643814 ~ 67644573 (+)
G536400 NA non-coding upstream 22113 66583358 ~ 66587117 (+)
G536394 NA non-coding upstream 35379 66573556 ~ 66573851 (+)
G536393 NA non-coding upstream 35734 66573241 ~ 66573496 (+)
G536392 NA non-coding upstream 36838 66572059 ~ 66572392 (+)
G536371 NA non-coding upstream 116767 66488565 ~ 66492463 (+)
G536409 NA non-coding downstream 1134 66648557 ~ 66651510 (+)
G536585 NA non-coding downstream 281142 66928565 ~ 66932555 (+)
G536994 NA non-coding downstream 364748 67012171 ~ 67012394 (+)
G537000 NA non-coding downstream 389206 67036629 ~ 67036990 (+)
G537004 NA non-coding downstream 392937 67040360 ~ 67040589 (+)
G536406 NA other upstream 5177 66602785 ~ 66604053 (+)
G535150 LOC106587155 other upstream 759789 65847623 ~ 65849441 (+)
LOC110526356 LOC106587213 other upstream 1447900 65065380 ~ 65178884 (+)
G534653 NA other upstream 1491274 65113280 ~ 65169563 (+)
G534453 NA other upstream 1762126 64790322 ~ 64847104 (+)
G536995 zfhx3 other downstream 365797 67013220 ~ 67018653 (+)
G537029 zfhx3 other downstream 456883 67104306 ~ 67104908 (+)
G537032 LOC106587324 other downstream 462253 67109676 ~ 67110628 (+)
G537606 NA other downstream 1107133 67754556 ~ 67756618 (+)
G537617 atxn1l other downstream 1119333 67766756 ~ 67767613 (+)

Expression


Co-expression Network