LOC110526393 (LOC106587180)


Basic Information

Item Value
gene id LOC110526393
gene name LOC106587180
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 66748816 ~ 66753440 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607342.2
ACCGGAATGAAATCATTGGTTCTTTCCGCATGTCTGCTGATGTAACGATATGCCGGTTGCAAAGGGGAAACTGGCTTTTCCTACGAAACTCGGGCGTATGCATTGCTAAGGCAGTCCACATTGGATACACGAACCTTCATGCTGTCTTATAAACTCTACAGCATACGATTCAACGTTGGATAATCAAAGTGTAACTGAGGGACTTAGCTAGCTAGGCAAATAGTGTTAAAATAGATAATGGGCGAGGAAATGAACGAGAACATGATCAACACAAATGGTGCTGCTAACAGCATGGGGGATGTGAATCACACCGCAGAAAAGACAACAGAGAGCGATGTGAAATACTACACAttggaagaaataaaagctcaaaaTATGAGCAAGGACACATGGCTTATCATCCACGATAAAGTGTATAACATCACCAGTTTCTTGGCGGAGCatccaggaggagaggaggttctGGTGGAGCAGGCAGGTGCAGATGCCACAGAGAGCTTCGAGGATGTTGGTCACTCTACAGATGCCAGAGAGTTGCTTATCCAGTACTACATTGGGGAGCTCCATATGGATGACCGGAAGAAGGACGGCACAAAGGAAGAATTCATTACAACAGGAGATGGCTCCAGcTCGTGGACCACATGGTTGATACCTGCCATAGCTGCAGTTGTTGTGGGTATCATGTATCGATACTACATGCTGGAGCGCAAGTCTTCCTGAGCCCTGACGCTGTCGTCGCTTCTCATTCTTTCTGTCTGGAGGCCTTGATATGTTTGACCAAACCCCCCTTGCATTGAACGTACACAACTTTTCAGAGGTGTCCCACTCAACTCATACAGTGCCCTCACCTTgaaggaaagggagggaaagGATAAAACAATCCCCTTGCCCCTCTGCTTTCTTTTCTAGACCTCACCCAACAGGCTGTGGGGTGAGATGCATCTGGAAACTTTCTCCCCTTAGTCTCTAAATTGTTTTCTAATCTATTCATATTATTTACGCACTCTGCCTTTTGATACTTATTGTGTGGTGTCTTTTTAAGTTAGTTATTCATATGCAAGTGATCTCAACTGTAATGTATATCTGCAAACTCTTGTCGCTATCTGCTTTGTGGGACTGTGTGGTGTCTTTTTAAGTTAGTTATTCATATGCAAGTGATCTCAACTGTAATGTATATCTGCAAACTCTTGTCGCTATCTGCTTTGTGGGACttgtacagtgagctccaaaagtattgggacagtgatttttgttgttgttttggctctactCCAGCACTTTAgattttaaatgatacaatgaGTATGTGGTTAAGGTGCAGACTGTCAGGgtgttttcatccatatcgggtgaactgtttagaaattaaaacactttttgtacatagtccccccattttaggagaCCAaatgggacaaattcacttgtgtattaaagTTGTAGAAAgtgaagtatttggtcccatattcatagcacgcaatgactacattaagGTTGTGATtctacaaatttgttggatgcatttgtttgttttggttgtgtatCAGATTATTTTGTACCCAATAGGGATGAATGGTATATAGTGTATTATTGTGCAATTtcggagtcacttttattgtaaataagaatataatacgtttctaaacacttctacattaatgtgaatgctaccatgattacggataattcTCATTGAATCGTGAATGAGTGAGAAATACATAttttacccccaagacatgctaacctctcaccattagaataacgggaggttagcattttggggGGCGATATATTTGTGCATCTAACtttctcatcattattcacaattcattcaggattatccatagtcatgatagcatccacattaatggatGCTATcatgggcacaaaataatctgaaacacaaccaaaacaaacaaagcAAAGCAACaaagcaaatgcatccaacacatttgtcccaatacttttagtcccctaaaatggggggagaCTATGTATAACAAACGTctacactttaacctcatagtccttagcatttaaaaaaaaaaagaaaaattggGACTTTGCTGTCCCAAAACTTTTAgagctctctgtatttctctcttgtTTGTTCAGACATGTTTAGTGGCTAACCCCACCATCTCTATGCTATAGGTCTAGGAAGTATAAATATATTTGTGTGTAGTAGAGCATGGCAACCTATGGGGTTATGGGGTCATATCTATAAGAATGAATGCTGTTTTCTTACACTGAGAAATCTGATTAGCATGTTTTTTTAGTTTAGGTTAAGTTGCATACTCCTCATGAGTCTTAATTCTCCTCAGACTGCTGCCCAGTATTTCATATCTGGTGACTGAATAACATAGGAAAAGCTATCGGTTTGCTTGAGAATAGATTGTCATGCAATTTGTCATTTCAAACTTTAAAAAGTATAATTGATTTGAACCAATGACTTGATTGAACAGTATGCCTCATAGTTAAAGTACATCATTTATGTTCAGCCATTAATTGCGTTGCATGCATGCATCGACTGATTGAGTAGGCCTCGTTCTCGGAATATCTATATTTTGCCTTACAAAGGCTCCACGCCATGTATATTCTCTTGATGTGGTATTGATAAGTTAAATTGATATTATTTAAAAGTGAAATGTACTTATCCCCAACTCCCCCTTTTCTAGTTACTTTTAAGCATTTATTTAAGCATTTATTTTGGTGATACTATGCTTTAAAAAACATTAAGTATGAGATCATTGGtgtgtgttatatatattataacctGGATTAATTCTATTGCATTACACACATTGTGCAGGATATATTTTTGTCTCTTCCTATGCACATCCATTAGCAATTAAAAAATACTGCCCTATGTAGTGAGTGTTGTTGAATTCTAATGATTGGACTAAAATTGTACTCTTGAAGGCATAAAACCCTTTTATATTCG

Function

NR:

description
cytochrome b5-like

GO:

id name namespace
GO:0046872 metal ion binding molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
K23490 CYB5; cytochrome b5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607342.2 True 2944 mRNA 0.39 5 66748816 66753440

Neighbor

gene id symbol gene type direction distance location
LOC110526947 LOC105029748 coding upstream 28375 66719808 ~ 66720441 (+)
LOC110526392 LOC106587181 coding upstream 101393 66609230 ~ 66647423 (+)
LOC110526390 LOC106587182 coding upstream 146679 66597778 ~ 66602137 (+)
LOC110526948 LOC106562086 coding downstream 2890 66756330 ~ 66776332 (+)
LOC110526401 LOC106587347 coding downstream 774702 67528142 ~ 67544856 (+)
LOC110526949 mald3 coding downstream 890374 67643814 ~ 67644573 (+)
LOC110526406 LOC106587353 coding downstream 983370 67736810 ~ 67753397 (+)
LOC110526410 myo1e coding downstream 1095834 67849274 ~ 67897779 (+)
G536409 NA non-coding upstream 97306 66648557 ~ 66651510 (+)
G536400 NA non-coding upstream 161699 66583358 ~ 66587117 (+)
G536394 NA non-coding upstream 174965 66573556 ~ 66573851 (+)
G536393 NA non-coding upstream 175320 66573241 ~ 66573496 (+)
G536392 NA non-coding upstream 176424 66572059 ~ 66572392 (+)
G536585 NA non-coding downstream 175125 66928565 ~ 66932555 (+)
G536994 NA non-coding downstream 258731 67012171 ~ 67012394 (+)
G537000 NA non-coding downstream 283189 67036629 ~ 67036990 (+)
G537004 NA non-coding downstream 286920 67040360 ~ 67040589 (+)
G537007 NA non-coding downstream 294849 67048289 ~ 67048510 (+)
G536406 NA other upstream 144763 66602785 ~ 66604053 (+)
G535150 LOC106587155 other upstream 899375 65847623 ~ 65849441 (+)
LOC110526356 LOC106587213 other upstream 1587486 65065380 ~ 65178884 (+)
G534653 NA other upstream 1630860 65113280 ~ 65169563 (+)
G534453 NA other upstream 1901712 64790322 ~ 64847104 (+)
G536995 zfhx3 other downstream 259780 67013220 ~ 67018653 (+)
G537029 zfhx3 other downstream 350866 67104306 ~ 67104908 (+)
G537032 LOC106587324 other downstream 356236 67109676 ~ 67110628 (+)
G537606 NA other downstream 1001116 67754556 ~ 67756618 (+)
G537617 atxn1l other downstream 1013316 67766756 ~ 67767613 (+)

Expression


Co-expression Network