LOC110526402 (LOC106587327)


Basic Information

Item Value
gene id LOC110526402
gene name LOC106587327
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 67577741 ~ 67594801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980765.1
ttctatgatttTGTGTGCCACTGAGTTCAAACGTTTTTATAATGTTCAGATTTGATAAGAATATGTTAACATTTGTttgtttaaatatattttctttcATCAATGCTGTTGTAAATGAATTAGCCGGTCATGAAATACTAAACGTTTCAATATTGTCTTGAACATTGTTGTAACACATGCAGTGCTCCAGCCATCATCACTGTCCACATTTCTGCTTCTGTGCTACAATGTCATCCCAGGTGTCAAATGAAAACTGTGCAACATGGCTTATATCAACAATATAGCTGTTTTGAGTCAGGTTTACCTCAGAGCATGTGTTGTCAACTTGTCCAATGGGAGTTGTGTTGATGTGTGAGACTTCTAGGTTTGACATTGGTGGCAGTATAGGACAGAAGAGCTACTGCAGAGCCACCAGGTGGAAGCTCACCAGCTCCTGTATATGTAGGCagggtggcgtgtgtgtgtgtgtggctggctgctctgtctgtctgtcactcaggTATAACATTCATGAGAATGATGAGAAAGGCCCAGAAATAAAGGCTGGTGTAGGTTTGGTGTGAGAAGGTAGGCAGGGACACAAAGAGAGGGCCAGAGGAGGGGTGTGGTGGGATGGTTGGGCTGCCGGCTGGCTCCCCTCACTGGCTGTGGCTGCTTGGCTCTGTGACAGTGTGTTGACACAGACCGGCCGTCAGACCTCAAGCCGCCGTtccaggctgagagagagagaggaggaattgAAGGATGCATGGATTAGTGCATTGTCTCTGCTGCGCTCAGAACCAGAGCTCACACAAGGCTGCCCACTGTAGTCTGCCTACCCAGAGCCTTAGACACAGACGCCCAGAAACCCGTCCCAGAGACCGGAGATGACTGCTGCCATGCCCTTCTGGCTCTCAGCCCTCACCCTTGCCCTCAACCTCCTGGTCCTCTCTGCCAGGGAAGGAGCTGCCCTTTTCCTGCCTGACTCCAATGAGCTGCGGCAGCTACTGAGCCGGTACCAGGATGACCAGAACAGCACCGATAACACAGCGGGTAGTAGGACCCGACGGGCCATCCAGTGGACAGACCGCGGGGAGATTCTACAACTGCACAACAAACTGAGAGGACAAGTCTACCCCACCGCATCCAACATGGAGTACATGGTCTGGGATGATGAGCTGGAGAGGTCAGCCACTCACTGGGCAGAGGCATGCCAGTGGGAACATGGACCTAATGACCTGCTCATGTCCATCGGTCAGAACCTCGCCGTTCATTGGGGGAGGTACCGCTCCCCGGCCTACCACGTCCAGGCCTGGTATGATGAGGTGAAGGACTACACCTACCCCTACCAACATGAGTGCAATCCCTGGTGTCCCGACCGCTGCTCAGGGCCCATGTGCACCCACTACACCCAGCTGGTCTGGGCCACCACTAGTCGTGTGGGGTGTGCAGTGCACGTTTGTCCCAGGATGAACGTGTGGGGGGAGATCTGGGAGAACGCTGTTTACCTCATCTGTAACTACTCCCCCAAgGGAAACTGGATCGGAGAGGCCCCTTACCAACATGGCCGCCCATGCTCCCAGTGCCCTCCTAGCTATGGAGGAAGCTGCAGGGACAACCTCTGCTTCAAGGGGGACTCTCAGCGTTCTGAGACTGAGGACATGAACGAAGTGGAGAAAGCTCAGATTCCCATGTCACCCCGCACCACCACCAAGCCTGTCCACAGACCCCAACCCAAGCCTGCTGCTCCCAAGAAGCCCTCCACTCCCAAGCCTTCTACTCCCAAGGCTCCCACCAGCACTTTCCTGGCCCAAAACATCAAATGTGAGACCAAAATGCGTGACAAGTGCAAGGGAGCAACCTGCAACAGATTCAACTGCCCTGCTAACTGCCAGAACAAGAAAGGGAAAGTGTGGGGGACGCTCTTCTATGATGTGCAATCAAGTATCTGTCGTGCTGCTATGCACTATGGCATCATCAATAACAATGGTGGTCTGGTGGACACTACGAGGAAAGACAAGTTGCCATTCTTCGTCAAGGCAACAAAGAACGGCATTGAGTCATTCAGTAAATACAAAGCCGGCAATGCATTTGTGGTGTCCAAAGTGGAAAGACAATCAGTGGACTGCTATGCAACAGTGGCGGAGATCTGCCCCTTCAAGAAGCCCTACTCCAACTGCCCAAGAGTGTTCTGTCCGGCCAACTGCAAGAATGAGCCATCCTACTGGGCTCCGGTGGTTGGGAACAGCTTCTACACAGAGCGCTCCAGTATCTGCCGGGCAGCCATCCATGCCGGGGTGATCCAAGCCGGTGGAGGCTACGTGGACGTCCTGGCCCTGGATAAGAAGAGGAGTTACGTTGGTGTCCTGAAGAACGGCATCCAGTCAGAGAGTAAGAGCAATCCAGAGGGTGGCTCGTTCCGTGTTTTTGCTGTGAGGGAGTGAGTCTCCTCCATCTCAGGGCCTCCCACTCATTGGTTCAGGGACTAACAGGGTCCCCCATCTGCTCTCAAGGGGCAGGAAGTGCCCACAGGTTCGATGCCATGgcaactcctcccatctgtctctgtctcccactctggGAGGAAGCAGAACTTCTCATTGGACCAACAGACACTTCTCCCTCTTAGCTAATAAACAGTAACTGACTGCTCAATTCGGTGGCTAACATCACAAAGAACCCTTCTGCCTTCTCCTACCCTTCTCACCTTTAAACCCCAGATGTGGATATTTTTGTAAGATACACAAACGTTAATGCAAAATGATGTGTAACATCAAAGACCAATAGAACAGCTGGTGCTGGAACTCTGCGTCTTGACATGTAGttagatttcaaatcaaatgtcataTTTGTTTATATTTTATGTTCTTAATACAAAAGTGAATCATTGGTCTCCATGCACAGGAATGTATATTGATCACTGTATTTAATCATTCTGTACAGATTTAATTCATTCATTTTTTCCTTCTTAAATGAGTGTATATTGACAGTTTTATGTGTTTATAATGTATTTTGTAGCTTGTCTCTGCTTTCCTAACCCATTTATGCTTTCATCGTGGTCTTTACCTTTGGCGGATAGGCCATGGTGCTTGAGTTAGGAGAGGATCTGTGTTTGGCATGCTGGACGAGCTCacagtggacagacagacaggcagacagagacagacagacagacttaggGGTTGCATCggaagggaaggggaagggggaggaggaggaggaggaggaggaggggaaggcaTACCTCCAAGGAAAAGAAACCTTTCCTGAATACAGCTTGTACGACTTCCAGTGTCAATAATGTTCAGACGATCTGGTTAAGGTACAAAAACATTGTAGCAATATTCTGTCCACTGTGAGCTCAGGAAGGCAATGGGAGCTTGTGTGGGCAGGGCTTTCAAAATGGTGGCATATCTGGCTTCATCCGAGGACATTCACAGATGAACAATGTTCTTGTTTGATAAATGATTCTCTATTTATAATAGCTCACTGCTTtcttcccccctttcctctcttgaTGCCATGTGTTTTGATTGAATAAGAGAAATACTCCAAGATAGGTTGAATTTGTCTCCACTTAAGACAGTTGAATGTTGTAGGTTTTGTAGAAAGAGGGTCTTATACAGTCCAATGTGAGAAAGGTGTGCCAAGTGTTCCTATCAGCAGGCTTAGCTTCAGTTAGGATTCATTCACTAGGTAATGATTTGTAAATTACACAGAGGATGCAGAACATGGATCGGTTTAAACCACTCATACCCAGTTACTTATCCAGAAGGAAGGCACACAGAGGCAGGCTTCAGTTGGGGGATATCCTCTTAAATGCTGAGACTTTGTCGTGAGAGGAGAGTAAATCTATGTACATTTATGCTGGAGGTTTAGGGTCTCCTAAAGAAGGGCATTAGGTATCCTCTATCTATCCCTAGGCTAGACTGGACAGCAGTGTAGCCATTCTCTCTTTGTTTTAGATTTCATATTTCTATGTTTTTATTAGGCTACCTCAGTCTTATAGTACATGGGCAATCTTAAAGGAAATGGTAATGGTTTGTACAGCTTTGGAAATGGAGTGTAATACTTTGATTTGTCTTTTctgaactgttctctctgctgtaaAAGCCTTCTTTCTAAATATATGTGTTGTGTTATTTTCGTTTGTTTGCCTAGTTTGTATGGTGTTAATAGGCATTGGATGGgcttttgtatttttattttttttgtacaatTTGAAAATAATTAAAGTTTGAAATAGTTagaa
>XM_036980764.1
GGGAGTGACTAAAGAAAGAGGAGTTAAGATTTGTTTCCCTCATCGCCCGTTCAGCGGGGTCTCTATATAAAGCACTGCGATGCCGTGGTAAAGTTAATCAAAAGTCACAAAGTTACTCTGCCCTCTAGGACCGCAGCCAACGAGTACAGCTCCACTTCAGCACCAATTTAGCAAACGGGAAATACTCAACCGGCGCAGAAGCTTTTGGATAATTGCCGATAATTGCCAGTGATTgagCATTGTCTCTGCTGCGCTCAGAACCAGAGCTCACACAAGGCTGCCCACTGTAGTCTGCCTACCCAGAGCCTTAGACACAGACGCCCAGAAACCCGTCCCAGAGACCGGAGATGACTGCTGCCATGCCCTTCTGGCTCTCAGCCCTCACCCTTGCCCTCAACCTCCTGGTCCTCTCTGCCAGGGAAGGAGCTGCCCTTTTCCTGCCTGACTCCAATGAGCTGCGGCAGCTACTGAGCCGGTACCAGGATGACCAGAACAGCACCGATAACACAGCGGGTAGTAGGACCCGACGGGCCATCCAGTGGACAGACCGCGGGGAGATTCTACAACTGCACAACAAACTGAGAGGACAAGTCTACCCCACCGCATCCAACATGGAGTACATGGTCTGGGATGATGAGCTGGAGAGGTCAGCCACTCACTGGGCAGAGGCATGCCAGTGGGAACATGGACCTAATGACCTGCTCATGTCCATCGGTCAGAACCTCGCCGTTCATTGGGGGAGGTACCGCTCCCCGGCCTACCACGTCCAGGCCTGGTATGATGAGGTGAAGGACTACACCTACCCCTACCAACATGAGTGCAATCCCTGGTGTCCCGACCGCTGCTCAGGGCCCATGTGCACCCACTACACCCAGCTGGTCTGGGCCACCACTAGTCGTGTGGGGTGTGCAGTGCACGTTTGTCCCAGGATGAACGTGTGGGGGGAGATCTGGGAGAACGCTGTTTACCTCATCTGTAACTACTCCCCCAAgGGAAACTGGATCGGAGAGGCCCCTTACCAACATGGCCGCCCATGCTCCCAGTGCCCTCCTAGCTATGGAGGAAGCTGCAGGGACAACCTCTGCTTCAAGGGGGACTCTCAGCGTTCTGAGACTGAGGACATGAACGAAGTGGAGAAAGCTCAGATTCCCATGTCACCCCGCACCACCACCAAGCCTGTCCACAGACCCCAACCCAAGCCTGCTGCTCCCAAGAAGCCCTCCACTCCCAAGCCTTCTACTCCCAAGGCTCCCACCAGCACTTTCCTGGCCCAAAACATCAAATGTGAGACCAAAATGCGTGACAAGTGCAAGGGAGCAACCTGCAACAGATTCAACTGCCCTGCTAACTGCCAGAACAAGAAAGGGAAAGTGTGGGGGACGCTCTTCTATGATGTGCAATCAAGTATCTGTCGTGCTGCTATGCACTATGGCATCATCAATAACAATGGTGGTCTGGTGGACACTACGAGGAAAGACAAGTTGCCATTCTTCGTCAAGGCAACAAAGAACGGCATTGAGTCATTCAGTAAATACAAAGCCGGCAATGCATTTGTGGTGTCCAAAGTGGAAAGACAATCAGTGGACTGCTATGCAACAGTGGCGGAGATCTGCCCCTTCAAGAAGCCCTACTCCAACTGCCCAAGAGTGTTCTGTCCGGCCAACTGCAAGAATGAGCCATCCTACTGGGCTCCGGTGGTTGGGAACAGCTTCTACACAGAGCGCTCCAGTATCTGCCGGGCAGCCATCCATGCCGGGGTGATCCAAGCCGGTGGAGGCTACGTGGACGTCCTGGCCCTGGATAAGAAGAGGAGTTACGTTGGTGTCCTGAAGAACGGCATCCAGTCAGAGAGTAAGAGCAATCCAGAGGGTGGCTCGTTCCGTGTTTTTGCTGTGAGGGAGTGAGTCTCCTCCATCTCAGGGCCTCCCACTCATTGGTTCAGGGACTAACAGGGTCCCCCATCTGCTCTCAAGGGGCAGGAAGTGCCCACAGGTTCGATGCCATGgcaactcctcccatctgtctctgtctcccactctggGAGGAAGCAGAACTTCTCATTGGACCAACAGACACTTCTCCCTCTTAGCTAATAAACAGTAACTGACTGCTCAATTCGGTGGCTAACATCACAAAGAACCCTTCTGCCTTCTCCTACCCTTCTCACCTTTAAACCCCAGATGTGGATATTTTTGTAAGATACACAAACGTTAATGCAAAATGATGTGTAACATCAAAGACCAATAGAACAGCTGGTGCTGGAACTCTGCGTCTTGACATGTAGttagatttcaaatcaaatgtcataTTTGTTTATATTTTATGTTCTTAATACAAAAGTGAATCATTGGTCTCCATGCACAGGAATGTATATTGATCACTGTATTTAATCATTCTGTACAGATTTAATTCATTCATTTTTTCCTTCTTAAATGAGTGTATATTGACAGTTTTATGTGTTTATAATGTATTTTGTAGCTTGTCTCTGCTTTCCTAACCCATTTATGCTTTCATCGTGGTCTTTACCTTTGGCGGATAGGCCATGGTGCTTGAGTTAGGAGAGGATCTGTGTTTGGCATGCTGGACGAGCTCacagtggacagacagacaggcagacagagacagacagacagacttaggGGTTGCATCggaagggaaggggaagggggaggaggaggaggaggaggaggaggggaaggcaTACCTCCAAGGAAAAGAAACCTTTCCTGAATACAGCTTGTACGACTTCCAGTGTCAATAATGTTCAGACGATCTGGTTAAGGTACAAAAACATTGTAGCAATATTCTGTCCACTGTGAGCTCAGGAAGGCAATGGGAGCTTGTGTGGGCAGGGCTTTCAAAATGGTGGCATATCTGGCTTCATCCGAGGACATTCACAGATGAACAATGTTCTTGTTTGATAAATGATTCTCTATTTATAATAGCTCACTGCTTtcttcccccctttcctctcttgaTGCCATGTGTTTTGATTGAATAAGAGAAATACTCCAAGATAGGTTGAATTTGTCTCCACTTAAGACAGTTGAATGTTGTAGGTTTTGTAGAAAGAGGGTCTTATACAGTCCAATGTGAGAAAGGTGTGCCAAGTGTTCCTATCAGCAGGCTTAGCTTCAGTTAGGATTCATTCACTAGGTAATGATTTGTAAATTACACAGAGGATGCAGAACATGGATCGGTTTAAACCACTCATACCCAGTTACTTATCCAGAAGGAAGGCACACAGAGGCAGGCTTCAGTTGGGGGATATCCTCTTAAATGCTGAGACTTTGTCGTGAGAGGAGAGTAAATCTATGTACATTTATGCTGGAGGTTTAGGGTCTCCTAAAGAAGGGCATTAGGTATCCTCTATCTATCCCTAGGCTAGACTGGACAGCAGTGTAGCCATTCTCTCTTTGTTTTAGATTTCATATTTCTATGTTTTTATTAGGCTACCTCAGTCTTATAGTACATGGGCAATCTTAAAGGAAATGGTAATGGTTTGTACAGCTTTGGAAATGGAGTGTAATACTTTGATTTGTCTTTTctgaactgttctctctgctgtaaAAGCCTTCTTTCTAAATATATGTGTTGTGTTATTTTCGTTTGTTTGCCTAGTTTGTATGGTGTTAATAGGCATTGGATGGgcttttgtatttttattttttttgtacaatTTGAAAATAATTAAAGTTTGAAATAGTTagaa

Function

NR:

description
cysteine-rich secretory protein LCCL domain-containing 2-like

GO:

id name namespace
GO:0005576 extracellular region cellular_component

KEGG:

id description
K24243 CRISPLD; cysteine-rich secretory protein LCCL domain-containing

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980765.1 False 4234 mRNA 0.48 13 67577741 67594505
XM_036980764.1 True 3712 mRNA 0.48 13 67577741 67594801

Neighbor

gene id symbol gene type direction distance location
LOC110526399 zfhx3 coding downstream 401085 67005295 ~ 67176656 (-)
LOC110526398 LOC106562084 coding downstream 606710 66922957 ~ 66971031 (-)
LOC110526396 LOC106562084 coding downstream 705643 66827254 ~ 66872098 (-)
LOC110526397 LOC106562084 coding downstream 758183 66804358 ~ 66819558 (-)
LOC110526387 LOC106587187 coding downstream 1072686 66499996 ~ 66505055 (-)
LOC110526403 LOC106587349 coding upstream 5760 67600561 ~ 67639678 (-)
LOC110526404 LOC106587351 coding upstream 50459 67645260 ~ 67700057 (-)
LOC110526405 LOC106587331 coding upstream 108714 67703515 ~ 67736797 (-)
LOC110526407 atxn1l coding upstream 164635 67757121 ~ 67769916 (-)
LOC110526408 LOC106562206 coding upstream 175542 67770343 ~ 67794586 (-)
G537514 LOC107396935 non-coding downstream 3915 67573394 ~ 67573826 (-)
G537510 NA non-coding downstream 15693 67561801 ~ 67562048 (-)
G537497 NA non-coding downstream 56758 67520762 ~ 67520983 (-)
G537487 NA non-coding downstream 67607 67509660 ~ 67510134 (-)
G537484 NA non-coding downstream 70953 67506516 ~ 67506788 (-)
G538083 NA non-coding upstream 97333 67692134 ~ 67692451 (-)
G538099 NA non-coding upstream 154906 67749707 ~ 67749930 (-)
G538101 LOC100194703 non-coding upstream 155683 67750484 ~ 67750735 (-)
G538110 NA non-coding upstream 156697 67751498 ~ 67756591 (-)
G536630 LOC106562092 other downstream 1027767 66549367 ~ 66549974 (-)
LOC110526379 LOC106587193 other downstream 1296122 66277162 ~ 66326558 (-)
G536183 NA other downstream 1301452 66262486 ~ 66276289 (-)
LOC110526365 LOC106587205 other downstream 1951769 65600097 ~ 65765382 (-)
G538277 NA other upstream 547450 68142251 ~ 68144907 (-)
G538460 LOC106587433 other upstream 915514 68510315 ~ 68516681 (-)
LOC110526447 LOC106587408 other upstream 1212612 68807413 ~ 68816777 (-)
LOC110526455 LOC106587401 other upstream 1354719 68949510 ~ 68953699 (-)
G539306 NA other upstream 1407942 69002743 ~ 69005665 (-)

Expression


Co-expression Network