LOC118965064 (LOC106577244)


Basic Information

Item Value
gene id LOC118965064
gene name LOC106577244
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68060636 ~ 68063992 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC118965064
ATGGAGCGTGGCAGAGATGGAACGCAGCACTACGCCGGCCCCAGCCACAGCTACCCACAATGCTCTATGGCTCCCATGAGCCCTCTGCGAGGTCAGACTGTTCTGTCTGCCGCATACGTCAGCGCAAGCACAGGAGCTGTCGTCACAGCCCTGGGACTCTAGCCAAACACCTTCCAGTCGTCATGAGACAGTTCGGCCCCTTCTTTGCTGTAGCGGCTGTCAACTGTATCAACATCCCCTTCATGAGGCAGAGGGAGCTGAAATACGGCATCCCAGTGACCAATGGAAACTGGTTAGGAGAGTCCGTCACCGCTGCCAAGTCAGGCATCATCCAGGTGGTGGAGTCCACGATTGGCATGGCTGTGCCAGCTATGGCTGTGCCCCCTTTGGTAATGAAAACACCTGGGGAAGAAAGCCCTTCATGAAGTGGTTCCTAGTCCTAAACACCTCAGTACTGGTGGGTCTGTGTTTGGTGTTTGCCACTCATCTGTGCTGTGCCCTGTTCCCACAGTTTTTAGTATGTTTATCGTCCATGGGGATTTGGGATGTGGGTGTTTAA

Function

NR:

description
sideroflexin-1-like

GO:

id name namespace
GO:0034220 ion transmembrane transport biological_process
GO:0006812 cation transport biological_process
GO:0016020 membrane cellular_component
GO:0008324 cation transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC118965064 True 559 mRNA 0.54 2 68060636 68063992

Neighbor

gene id symbol gene type direction distance location
LOC110526412 LOC106587340 coding upstream 87045 67959814 ~ 67973591 (+)
LOC110526410 myo1e coding upstream 162857 67849274 ~ 67897779 (+)
LOC110526406 LOC106587353 coding upstream 307239 67736810 ~ 67753397 (+)
LOC110526949 mald3 coding upstream 416063 67643814 ~ 67644573 (+)
LOC110526401 LOC106587347 coding upstream 515780 67528142 ~ 67544856 (+)
trnar-acg-5 NA coding downstream 55838 68119826 ~ 68130306 (+)
aldh1a2 LOC106587345 coding downstream 101057 68165049 ~ 68188551 (+)
LOC110526420 LOC106587436 coding downstream 345225 68409217 ~ 68433079 (+)
LOC110526423 LOC106587434 coding downstream 377342 68441334 ~ 68484719 (+)
LOC110526425 LOC106587433 coding downstream 431037 68495029 ~ 68546149 (+)
G537721 NA non-coding upstream 77742 67981566 ~ 67982894 (+)
G537720 NA non-coding upstream 87857 67971325 ~ 67972779 (+)
G537699 rnf111 non-coding upstream 119120 67940555 ~ 67941516 (+)
G537654 LOC100136691 non-coding upstream 159595 67899800 ~ 67901041 (+)
G537642 NA non-coding upstream 225065 67835301 ~ 67835571 (+)
G537802 NA non-coding downstream 45007 68108999 ~ 68109551 (+)
G537744 NA non-coding downstream 53501 68117493 ~ 68117835 (+)
G537815 NA non-coding downstream 74258 68138250 ~ 68138963 (+)
G537819 NA non-coding downstream 80889 68144881 ~ 68157426 (+)
G537617 atxn1l other upstream 293023 67766756 ~ 67767613 (+)
G537606 NA other upstream 304018 67754556 ~ 67756618 (+)
G537032 LOC106587324 other upstream 950008 67109676 ~ 67110628 (+)
G537029 zfhx3 other upstream 955728 67104306 ~ 67104908 (+)
G536995 zfhx3 other upstream 1041983 67013220 ~ 67018653 (+)
LOC110526436 LOC107688027 other downstream 615385 68679317 ~ 68681675 (+)
G538561 NA other downstream 640406 68704398 ~ 68704696 (+)
G538607 NA other downstream 747127 68811119 ~ 68811890 (+)
G538859 NA other downstream 842053 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 932091 68996083 ~ 69002828 (+)

Expression


Co-expression Network