aldh1a2 (LOC106587345)


Basic Information

Item Value
gene id aldh1a2
gene name LOC106587345
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68165049 ~ 68188551 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607382.2
GACTGCGGCTGACACCTGGTTATAAACACAGGAAGGATTCCAAAGTCCTAATCAGAAATCAGTAGAAAAAAACGAAGACGCATCTGCAACAGACACACGGAGGCAGGCGCGATGACATCCAGTAAAATCGAACTCCCTGGTGAAGTGAAGACCGACGCCGATGCCGCTGCGCTCATGGCATCTCTCCAGCTGATGCCCTCGCCGGTGCCCAACGCGGATATCAAGTACACCAAGATTTTCATCAACAATGAGTGGCAAGACTCTGTGAGCGGAAAGACCTTCCCAGTCTACAACCCTGCCAGCGGAGAGCAGATCTGTGAGGTCCAAGAAGCAGAGAAGGCTGATGTGGACAAGGCGGTGCAGGCGGCCCGGCTGGCCTTCACCCTTGGTTCAGTGTGGCGGAGGATGGATGCGTCAGAAAGGGGTAGACTGCTGGCTAAACTGGCTGACCTGGTGGAGAGGGACAGTGCCTATCTAGCAACTATAGAGTCCATGGACAGTGGGAAGCCTTTCCTGCCCACCCTGTTTGTGGACCTCCAGGGAACCATAAAGACGCTCAGATACTATGCTGGATACGCAGACAAGATCCATGGAACGTCCATTCCAATGGATGGAGACTATCTTACGTTCACTAGACACGAGCCCATGGGAGTGTGTGGACAGATCATCCCTTGGAACTTCCCACTGATGATGACTGCGTGGAAGCTAGGTCCAGCGCTAGCCTGTGGGAACACGGTGGTCCTGAAGCCTGCTGAGCAGACCCCCCTCACCTGCCTGTACATCGGATCACTGGTCAAAGAGGCCGGGTTTCCACCGGGAGTCGTCAATATTTTGCCAGGATTCGGGCCAACGGCAGGAGCTGCGATAGCTTCGCACATGGGCATAGACAAAGTGGCTTTCACAGGATCAACTGAGGTCGGCAAGCTGATCCAAGAAGCAGCTGGGAAGAGTAATTTGAAGAGAGTAACGCTGGAGCTAGGAGGAAAGAATCCCAACATTATTTTTGCAGACGCTGATTtgGATCTAGCTGTGGAGCAAGCCCACCAGGGAGTGTTCTTCAATGCAGGCCAGTGCTGCACTGCAGGCTCTCGTATCTTCGTGGAAGAGCCCATCTATGAGGAGTTTGTGCGCAGGAGTGTGGAGAGGGCCAAGAGGAGGACAGTAGGAAGCCCCTTCGATCCAACCACAGAGCAGGGTCCACAGATCAGCCAGGAGCAGCAGAGCCGCGTGCTGGAGTTTATTCAAAGTGGCATCAGTGAGGGAGCCAGGCTGGAATGTGGAGGCAAAGCCCTGGGCCTGAAAGGATTCTTCATCGAGCCCACTGTCTTCTCCAATGTCAAAGATGACATGCGCATCGCAAAAGAGGAGATCTTTGGACCAGTTCAGCAGATCATGAAGTTCAAGACTATTGATGAGGTGATTGAAAGGGCCAACAACACAGAGTACGGCCTGGTGGCAGCTGTGTTCACCAGCGATATCACCAAAGCCATGACCATCTCCACAGCCATGCAGGCTGGCACCGTCTGGATAAACTGTTTCAATGCCCTGAGCACGCAGTGTCCATTTGGAGGATATAAAATGTCTGGCAACGGGCGTGAATTGGGGGATTGTGGCCTGAAGGAATACTCAGAGGTGAAGACCATCACCATAAAGATCTCAGCCAAGAACTCCTAAGGCGGCCGGCCACACTAcatgtagtggaggaggacttcCTCTGAGGCGCACCACTGACcctctgggtgtctgtctgtggtggtaaaacACACGGATCATCCCAACTAGCCATGACCATGGGCAACTAACTCTATTGGCTGTGAAAACTCCctgcccactcctctccctcacctcccaTGGGCAGTCCTCACATCAACATCAGCTGTCTCCATCAGCCCGGTGTCCACCGGCGGTCTCAAGTTCACACCAAACCTATACTCCACCTACTGCCATCACCCACCTCCTCCACTAACCACACTAAAGCACTCGGAGAGACGATGGGAGAGGCTACTCTGTTCACGTCCCCCCCAAAACCCCCTAACCCACAGGAGTTGGACACTCACAGACTTAAGCACCGCACCATCCCTGCTTTGCCCCATGTCAGCTAATCATTGTAGCGTGTTGGGAGGCAGTGTGGTCGTGTTGTGGGGTATCATTGTCAAACCTCACACTGTATGTTATTATGTGTCATTGCTTTGATTTGCCAGGTAACATTCATGGAAGCATATCAGCTCATTCTAAGACCACTGAAGCGCTCAACCTCAGAAATGAATGGATGTCCATTGAAACTGTTAATTAGAATTTTTAATTGTTGATATCTAAttgttcatgttgttgtttgaaATTTTACCACTTAACACTGTATGTCCACGTATGACCAATGTAAACGTGAAAACAAAAATGGTTAACCTCTTAAAAGCATTTTAGTCATACCTGCTAAGACGAGGAGTAATGTATTTTAATCATAATGTAAGTTTCTTATCGATGTCCATCTATGTTCATGTTTATACAATTATGTACTATGAAATTATAAGATATAAAAATGGACCATAGCTTTTTTtagtaaaaaaaagttttttttctctcaaaa

Function

NR:

description
retinal dehydrogenase 2-like

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K07249 ALDH1A; retinal dehydrogenase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607382.2 True 2584 mRNA 0.50 13 68165049 68188551

Neighbor

gene id symbol gene type direction distance location
trnar-acg-5 NA coding upstream 45147 68119826 ~ 68130306 (+)
adam10a adam10 coding upstream 48643 68007028 ~ 68116406 (+)
LOC118965064 LOC106577244 coding upstream 101057 68060636 ~ 68063992 (+)
LOC110526412 LOC106587340 coding upstream 191458 67959814 ~ 67973591 (+)
LOC110526410 myo1e coding upstream 267270 67849274 ~ 67897779 (+)
LOC110526420 LOC106587436 coding downstream 220666 68409217 ~ 68433079 (+)
LOC110526423 LOC106587434 coding downstream 252783 68441334 ~ 68484719 (+)
LOC110526425 LOC106587433 coding downstream 306478 68495029 ~ 68546149 (+)
LOC110526426 LOC106587432 coding downstream 362349 68550900 ~ 68595583 (+)
LOC110526429 LOC106587430 coding downstream 408567 68597118 ~ 68603453 (+)
G537819 NA non-coding upstream 7623 68144881 ~ 68157426 (+)
G537815 NA non-coding upstream 26086 68138250 ~ 68138963 (+)
G537744 NA non-coding upstream 47214 68117493 ~ 68117835 (+)
G537802 NA non-coding upstream 55498 68108999 ~ 68109551 (+)
G537851 NA non-coding downstream 24599 68213150 ~ 68213458 (+)
G537857 NA non-coding downstream 30502 68219053 ~ 68219290 (+)
G537877 NA non-coding downstream 49083 68237634 ~ 68238106 (+)
G538001 NA non-coding downstream 256973 68445524 ~ 68448895 (+)
G538021 NA non-coding downstream 299131 68487682 ~ 68526289 (+)
G537617 atxn1l other upstream 397436 67766756 ~ 67767613 (+)
G537606 NA other upstream 408431 67754556 ~ 67756618 (+)
G537032 LOC106587324 other upstream 1054421 67109676 ~ 67110628 (+)
G537029 zfhx3 other upstream 1060141 67104306 ~ 67104908 (+)
G536995 zfhx3 other upstream 1146396 67013220 ~ 67018653 (+)
LOC110526436 LOC107688027 other downstream 490826 68679317 ~ 68681675 (+)
G538561 NA other downstream 515847 68704398 ~ 68704696 (+)
G538607 NA other downstream 622568 68811119 ~ 68811890 (+)
G538859 NA other downstream 717494 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 807532 68996083 ~ 69002828 (+)

Expression


Co-expression Network