LOC110526422


Basic Information

Item Value
gene id LOC110526422
gene name NA
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68432656 ~ 68439524 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052222.1
CTTGTCGCACAGCCGAGAAAAACATTTGACCACGACTTGTTGCTATGCAACCGCAAAGCCACCCGCCAGATTCAGCACCACAAAATGTCTGTAAGAAGAATGCATGCGCCCGAAAGACTCATGTCATCCAAGGCAGAAAGGTCTCAAGGAGGAAGATCTGTGAGACGTCCAGCCTCTGTCCCCTCAAAGAAACCATCCACGATAGACCTACTTGCTAAAGAGGAGGAATACAAAGCTGGAGGCAAAAACAGCCGAACTAGTAAGACAAGCGGAACAGGTTATGTGACCAAAATTAAGTATTGTCAAAGTCAATCTCTTTCCACCTTGATGTTGAcattgaggatgaggaggaggatttCAGGAATGTGAACATGCTGGAATCTTCAGTTATGAAGCCCACTTCTAAGGTGCAGTATTCAATTCAGTTTGATACGTAAAATGTAACATCTCAGAGACACAAAGGTAATGTAATCAGTTAGTAAAACTGGGGGAGAATTTCAATTGTATTTCCTTGATTCCGCACGTCCTCTTCAAACCCCATTTCAAACCCCATTGGATGGGAAGGTCAGAGGGGCGGGACTTCTGACTTTCTCATTCAATGGGTTTTGAGGAGGCGAGGAATTAAGGAAATCCAATTGAAATTCTCCCTAAGTCATATTTCCATTGCTCAGGTAATGACAAAGAAAAGGGTCACATCAAAATCCAATTCACAAAACAGACCTGGATACCAGAGAAAAAGACAGTAAGAATGTTATCCTTGTCACAAATGTTTTCACAAATATCTATTGGAAACATTGGAAGATTGTGAAAGGTAATGGCTTAATGAGTGTCCAGCGTTGTTGATATTCAGTTCCTTATGTTTGTTATGACTTTTTCAACTTTTTGTTTGAGTTGTATTTTgtttatttgttactttatttcAAAACAACAAAGACATCTGCAGTTGATGATGTTGCGGTTCTTAAAGATTGTGTGGATTTTTCCTTGGCTAAAACAATATGTAGACATTGAGGGGAAGCTGGATGATGGAGATACTCATGTCAATCTTATGGAAGACATCATGCGCTGTGTTGGTGATGAGATGGGATCAGGTGAATTCTGATTTAATTTTTACACTTTCTGTGGCTTTCTCACAAATTTACAATATCACATCTGGAGCACAAGAATGGTTCTTTTCAAAAACATTCATTACAAAAAAAACAAGTTATTTATCAGAGTTCCAGAATATCAATTGTTTCAGCCTTAGTTCATTGAGCTTCTCGCATATCCTAAAAATGATATAATTCTTTATGTAACTATAGTATACTTtttttggtgtgttgtgtttcagaTCCGTTTTCTCAAAGCAAAACTTTGTGTAAAGCAAGAAGAATTTAACCGGCTGTCAATAGAGTGCAACATAAAAGTAATGATAGAAATATGAGAGATGGAAATTAGTTATATTTTTGAGTAAAATGTAACATTGAAACAagaataaaacatgtatttattctaGGATTATGCAAACAGTAGTTTAAGCACCAACATAAAGGAGGTCGAGGAGGCTCGAGCAGGACTACAGAAGACCACAACTTTCAGCAAACCCAGATAGAGAAACACAGAGCTTTAGCGGAGGAGTCAAACAGAAAAGGTGATGGGCTCCAGCAACAAGTAACTGCTCTACAGAAGgttggtcgtagatggaaggccggGTTGCCCAGCAGGGATCTCTTGTCctctgaagaatgtctctggtggtaagctggatacgttgtagtatcgTTGTGTGTGTTAGATTGAATACGTTGTtcgtcctttcctagcccacgtttacagcgtctgctgctaactcaacggctaggaggtatcacttctggagtgaataagagttcaaagttcataccaagccATACTTTTAAGCTcgtgctatattctggctggtatagttgAAATTCATCCTTTCGGTGTGTCGATCGTCACCTTCACATTGAACACGATGCTAATTTCGTTAGGTTATTATCTGAGCCATTTTAACCTaagaccgtcgtcctcacgtcctcggaacagcaAGTAGAATTTTTGTCAACAGGTTTATATAGTGGTGAAAGAAGGGCGTGTTTCTTAGTTTACAACCAAAGTCTGTTCACTTGGGTGAGTGAGCAGAGTTTCTCTATGACAAACCGTTCTCTCATttaagaagctaaaattacatttaatcttttcacaaatagtttcatatttaaacatttaaattgcacaacaattccatgtgaatctgataactacaATGTATCGACTTTCCAAGATAGTTTATGTCATCCTGTCATTAGTAGTAATAGCTcagacaacaactgatctgagatcatattcattaagtaccaacgcatgttttcaactggttggattaccgaaatatggttccgtttCCCACCTTTCAATGTTACCAGACTCTATGTTACAAATTCTTTACAAGAGTCAACTCTATAAAGTAGAGAAAAAGGTTTTATGGGGGTCATAAAACTCCCccaacaggccaacgtcatgacaccacactactgaacagtagtctaggtgcgacgaaactaggacctgttggaccttccttgttgatagtgttgttaagaaggcagagcaacgctttattatggacagacttctccccatcttagctactgttgtatcaatatgttgaccatgacagtttacaatccagggttactccaagcagtttagtcacctcaatctgctcaatttccacattattcattacgagacgtagttgaggtttagtgaatgatttgtcccaaatacaatgcttttagttttggaaatatttaggtctatcttattccttgctacccattctgaaactaactgcagctctttaagtgttgcagtcatttcaatcACTTTAGTAGCTGACGAGTATTGTGTTGagccttactcaaagccagtgacatgttgttagtaaagattgaacaAAAGCATGGAACCTGGTCAGTTtgacatggaaagagcaggtgttcctaatgttttgtacacttagtgtatgtCCACTCCCAAAGAAAAGAAGAATGAATGGTTGATGGCTTCCTATTGCTTAGTCACAACAATTATCTGTTTAATTTATAACTATTCACATTTCATTTCTGAAATATAACGTTAATAAGTACATGTGATGACAGTCAGTTTTTGTAGCTATCTAACCAAATATTACCATTATCATTACAGTGCTTTTGAAAATGTGTGTTGGTGCGCTATAAAAACGTTACACAAAATGCTTTTACTGATTTAGCTTGCTCCCGTGCGTGTTTAACAAAGGAAATTGGGGGTTTGAAGAGAGCACAAAAACAGGCAGCAACCAATCACAGTGCCATAAAGGTAAGACTGAACAGAGGAAGTTGGAGGAAGTTGAGAGGTCTAAGACACAACTGACCAAGCTCAAGCAGACGAGCAAGAAATTAAACCACCTATCAGTGCATTTAGTGATCACATCAATCATTTACACTAAATTGTATTGATAGATAGTGCTATGCTATTAGTATAGTTTAGATTTTGGTATTCAAGTTTGGCTTCTGTCACTTGTTGTATAACCCAGGTTAAATAAACTTGTTTTATGTCTATCCTTTCCAAAAGGACACAGCAGACCAGGAGCataaaaaaaatagaaacatTAAAAGCCAAAAACAAGAAGCTGGAAAAGCAAAAAGCTGAACTGATAGTGGGTTGTAAAAAGCAGCTCAAACTGATTGATACACTGAAAAGGCAAAAAATGCATTTAGAAGCTGCCAAGATGTTGTCATTTACAGAAGAGGGATTCATGAAAGCTCTTGACTGGGGGAAATCATAAAGCAATactgaaaaatgtatgtaatcctGCTTGCCTTGAATGTAT
>TU609674
AGAAATTAAACCACCTATCAGTGCATTTAGTGATCACATCAATCATTTACACTAAATTGTATTGATAGATAGTGCTATGCTATTAGTATAGTTTAGATTTTGGTATTCAAGTTTGGCTTCTGTCACTTGTTGTATAACCCAGGTTAAATAAACTTGTTTTATGTCTATCCTTTCCAAAAGGACACAGCAGACCAGGAGCataaaaaaaatagaaacatTAAAAGCCAAAAACAAGAAGCTGGAAAAGCAAAAAGCTGAACTGATAGTGGGTTGTAAAAAGCAGCTCAAACTGATTGATACACTGAAAAGGCAAAAAATGCATTTAGAAGCTGCCAAGATGTTGTCATTTACAGAAGAGGGATTCATGAAAGCTCTTGACTGGGGGAAATCATAAAGCAATactgaaaaatgtatgtaatcctGCTTGCCTTGAATGTATTCTTATGGTTAGCAACAGCATTGATTATGTGTCCTTTTATACAGAATATATTTGTAATGCAGTTGTATTTTAAAAGTTTAGCATTTTATTACAATAATGGGTTAAATCATTTTAAACTGTAGTTGCATTATCACCTAATAAAGGAAATGGTGTAGTTTTTGTTGATTACCAAGTGACTTCAACTGAAAATTGCTGCACCTCCATGATAGGATTTAAGGTGTGGTGATATGCAGCTAGTGGGATACAAATGAGTCTTTGCaacttaatacattttagagtacaCCATCGCCATAAGAAATCCACCATTTgatacacacaaaaaacacactaGACAGCATCTACCCAATAATGCCATCTAGTGGTGTAGTATAGAAAGTGGTTATTCATCATCTCCCCAGCCCTCTTCATCAAAGATGTCAGCCTGTcgcttttggaaattgcttctGAAGTCCTCATCAAAGTGTTCAAGGTCATCTTCCCGGAATATGC

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052222.1 False 3874 mRNA 0.38 7 68433145 68439524
TU609674 True 928 lncRNA 0.35 2 68432656 68433682

Neighbor

gene id symbol gene type direction distance location
LOC110526419 tcf12 coding downstream 33171 68298165 ~ 68399974 (-)
LOC118965111 NA coding downstream 122298 68310765 ~ 68310847 (-)
LOC110526418 cgnl1 coding downstream 137579 68264067 ~ 68295566 (-)
LOC110526951 LOC106587321 coding downstream 175777 68234854 ~ 68257368 (-)
LOC110526415 LOC106587344 coding downstream 272850 68137961 ~ 68160295 (-)
LOC110526433 NA coding upstream 156607 68596131 ~ 68609175 (-)
pigb pigb coding upstream 183910 68623434 ~ 68627384 (-)
LOC110526435 LOC106562227 coding upstream 225650 68665174 ~ 68677702 (-)
tradd LOC100136668 coding upstream 243647 68683171 ~ 68695735 (-)
LOC110526952 NA coding upstream 258726 68698250 ~ 68707033 (-)
G538371 LOC106587437 non-coding downstream 12578 68418811 ~ 68420567 (-)
G538412 NA non-coding downstream 17732 68413802 ~ 68415413 (-)
G538265 NA non-coding downstream 195239 68237623 ~ 68237906 (-)
G538330 NA non-coding downstream 203296 68229537 ~ 68229849 (-)
G538440 NA non-coding upstream 25047 68464571 ~ 68465000 (-)
G538451 NA non-coding upstream 56706 68496230 ~ 68501439 (-)
G538457 NA non-coding upstream 65683 68505207 ~ 68507545 (-)
G538459 NA non-coding upstream 106069 68545593 ~ 68545875 (-)
G538665 NA non-coding upstream 171965 68611489 ~ 68611707 (-)
G538277 NA other downstream 288238 68142251 ~ 68144907 (-)
G536630 LOC106562092 other downstream 1883171 66549367 ~ 66549974 (-)
LOC110526387 LOC106587187 other downstream 1928120 66499996 ~ 66505055 (-)
LOC110526379 LOC106587193 other downstream 2151526 66277162 ~ 66326558 (-)
G536183 NA other downstream 2156856 66262486 ~ 66276289 (-)
G538460 LOC106587433 other upstream 70791 68510315 ~ 68516681 (-)
LOC110526447 LOC106587408 other upstream 367889 68807413 ~ 68816777 (-)
LOC110526455 LOC106587401 other upstream 509996 68949510 ~ 68953699 (-)
G539306 NA other upstream 563219 69002743 ~ 69005665 (-)
LOC110526462 NA other upstream 833594 69272988 ~ 69289496 (-)

Expression


Co-expression Network