Gene
RNA
| Item | Value |
|---|---|
| gene id | LOC110526423 |
| gene name | LOC106587434 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 68441334 ~ 68484719 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| DNA-binding protein RFX7-like isoform X2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| XM_036980818.1 | False | 9145 | mRNA | 0.45 | 10 | 68441334 | 68484719 |
| XM_021607392.2 | False | 9115 | mRNA | 0.45 | 9 | 68441337 | 68484719 |
| XM_021607393.2 | False | 9112 | mRNA | 0.45 | 9 | 68441337 | 68484719 |
| XM_021607390.2 | False | 9153 | mRNA | 0.45 | 10 | 68441338 | 68484719 |
| XM_021607391.2 | True | 9150 | mRNA | 0.45 | 10 | 68441338 | 68484719 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110526420 | LOC106587436 | coding | upstream | 8255 | 68409217 ~ 68433079 (+) |
| aldh1a2 | LOC106587345 | coding | upstream | 252783 | 68165049 ~ 68188551 (+) |
| trnar-acg-5 | NA | coding | upstream | 321432 | 68119826 ~ 68130306 (+) |
| adam10a | adam10 | coding | upstream | 324928 | 68007028 ~ 68116406 (+) |
| LOC118965064 | LOC106577244 | coding | upstream | 377342 | 68060636 ~ 68063992 (+) |
| LOC110526425 | LOC106587433 | coding | downstream | 10310 | 68495029 ~ 68546149 (+) |
| LOC110526426 | LOC106587432 | coding | downstream | 66181 | 68550900 ~ 68595583 (+) |
| LOC110526429 | LOC106587430 | coding | downstream | 112399 | 68597118 ~ 68603453 (+) |
| LOC110526427 | ccpg1 | coding | downstream | 120877 | 68605596 ~ 68623888 (+) |
| LOC110526430 | LOC106587426 | coding | downstream | 142855 | 68627574 ~ 68640613 (+) |
| G537877 | NA | non-coding | upstream | 203228 | 68237634 ~ 68238106 (+) |
| G537857 | NA | non-coding | upstream | 222044 | 68219053 ~ 68219290 (+) |
| G537851 | NA | non-coding | upstream | 227876 | 68213150 ~ 68213458 (+) |
| G537826 | NA | non-coding | upstream | 249906 | 68155288 ~ 68191428 (+) |
| G537819 | NA | non-coding | upstream | 283908 | 68144881 ~ 68157426 (+) |
| G538021 | NA | non-coding | downstream | 2963 | 68487682 ~ 68526289 (+) |
| G538011 | NA | non-coding | downstream | 33035 | 68517754 ~ 68525267 (+) |
| G538008 | NA | non-coding | downstream | 62437 | 68547156 ~ 68547476 (+) |
| G538010 | NA | non-coding | downstream | 64413 | 68549132 ~ 68549490 (+) |
| G538507 | pigb | non-coding | downstream | 141726 | 68626445 ~ 68626777 (+) |
| G537617 | atxn1l | other | upstream | 673721 | 67766756 ~ 67767613 (+) |
| G537606 | NA | other | upstream | 684716 | 67754556 ~ 67756618 (+) |
| G537032 | LOC106587324 | other | upstream | 1330706 | 67109676 ~ 67110628 (+) |
| G537029 | zfhx3 | other | upstream | 1336426 | 67104306 ~ 67104908 (+) |
| G536995 | zfhx3 | other | upstream | 1422681 | 67013220 ~ 67018653 (+) |
| LOC110526436 | LOC107688027 | other | downstream | 194658 | 68679317 ~ 68681675 (+) |
| G538561 | NA | other | downstream | 219679 | 68704398 ~ 68704696 (+) |
| G538607 | NA | other | downstream | 326400 | 68811119 ~ 68811890 (+) |
| G538859 | NA | other | downstream | 421326 | 68906045 ~ 68906847 (+) |
| G538877 | LOC106582599 | other | downstream | 511364 | 68996083 ~ 69002828 (+) |
