LOC110526430 (LOC106587426)


Basic Information

Item Value
gene id LOC110526430
gene name LOC106587426
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68627574 ~ 68640613 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607416.2
CATGTCCCCTTTCAAACGCCGTAGATGTTTAACCTTTGTACTCAAACCAAATGTTGCTTTCTTTTCAACGTTAGTTGTTTAATTGTTGGAATTGCTAGACGTTTTGGTCTACACACACTTCATAAAATATCGTGGTCTGAAATAAGCACTCACTATGTCTGATGGGGACTATGATTACCTCATCAAATTCCTAGCCCTTGGTGATTCTGGAGTGGGGAAAACCAGCTTTCTGTACCAGTACACAGACAAAAAGTTTAACTCCAAATTCATCACTACAGTGGGCATTGATTTCAGAGAAAAACGAGTGgtATACAAATCAAATGGTCCAGAAGGGGCAGCAGGCAGAGGACAGAGGATTCATGTTCAGCTGTGGGACACGGCAGGGCAGGAGAGGTTTCGGAGTTTGACAACAGCTTTCTTCCGAGATGCGATgggcttcctcctcctctttgaccTCACCAATGAGCAGAGTTTCCTTAATGTCAGAAATTGGATGAGTCAATTACAGATGCATGCTTACTGCGAGAATCCAGATGTTGTTCTCTGTGGCAACAAGTGTGACCTACAGGAGCAGAGGGCAGTCCGTGAAGATGAGGCCCGTGAGTTGGCAGAGAAGTATGGAATCCCTTACTTTGAGACAAGTGCAGCTAACGGGCAGTTTGTTAGCCAGGCTGTGGATGTCCTGCTGGACCTCATCATGAAGAGGATGGAGCGCTGTGTGGACAAGTCCTGGATCCCTGATGGAACCGTGCGATCCAACGGACACAGTGGTCACACAGACATCACAGAGCCCAAGACCCAGGAGAAGGGCAAATGTGCTTGTTAGGGTCCACATACAGATAGTGGTTACACCTTCAGTTCCCTTCAGTGATGTTTTGGTAGGACTGGGCTGTATGGCATGTGATGAAAGGCATGTAACATTTGTAAATCAATGGTGTCATAGGAAGTTTTGTCAAGGTGGGGGGGTGTTTATGATGTGCAAAGCTGAAAGTAACCACTAACCCCTGCCAAATGTGCAAGAGCATTATTGTGTTTTGTTAATTTGATTATGCCATTTGGAGTGGTGCCTCCATTCACGTGTCAATTAAGTGCCTTTTATGTTTTCATTTCAGATAATATTATATGCATTTTACATTGTGAAACATAAAAGTGTATTGTAACTACTTTCTAAGATCCAGTAGAATTGTGAGAAGCCACTGAAAGTTGTATTAGTTGAGAACACTTCCCTGTGTATTAAAGGGAACCCACCCTTATTACATTTAACTTTTTgacacaggatatttttgtgaCAATGCACTTCCATTTATTCTTGTACAATGTAAAAGTCCTGAGCACATGCAATCTGTAGTGAATAGAGTGATTTATTGTATAGTTCTGCTCTGTAGTATCTGAGTAGCAGAGTCATTTGGGGTCTTTCTTTTTATCACGATGTCGGGATCTTGGGTCTATCAGAAATGTTTGAGGTTCCACGTAAATCCATGCTGATTTTGTTACACAATGTGCATTAAATCTGCTGTATTCTGTCAAACACTTTTGTCAAATATGTTAACCATATCCTTTATTccagaaaataaatattttattatttattaaa
>XM_021607415.2
TATTACCGTttggcgagagagggaggggctggCTCACTGCAACTGGACGGGAAGTGATGTTACATTGATTGTGAAGAGGGTTAATGCAACAAATGGATCGAAAGGATTTTGTAAACCCAATTTAGTGAGTTTTTTGTTGTTAATCAACCAATTGTCATCGCTTTTGAGAGGGCGCTTCTACACGAAACACCAATAAGAAAGTGACGCACATACACTGGTCTGAAATAAGCACTCACTATGTCTGATGGGGACTATGATTACCTCATCAAATTCCTAGCCCTTGGTGATTCTGGAGTGGGGAAAACCAGCTTTCTGTACCAGTACACAGACAAAAAGTTTAACTCCAAATTCATCACTACAGTGGGCATTGATTTCAGAGAAAAACGAGTGgtATACAAATCAAATGGTCCAGAAGGGGCAGCAGGCAGAGGACAGAGGATTCATGTTCAGCTGTGGGACACGGCAGGGCAGGAGAGGTTTCGGAGTTTGACAACAGCTTTCTTCCGAGATGCGATgggcttcctcctcctctttgaccTCACCAATGAGCAGAGTTTCCTTAATGTCAGAAATTGGATGAGTCAATTACAGATGCATGCTTACTGCGAGAATCCAGATGTTGTTCTCTGTGGCAACAAGTGTGACCTACAGGAGCAGAGGGCAGTCCGTGAAGATGAGGCCCGTGAGTTGGCAGAGAAGTATGGAATCCCTTACTTTGAGACAAGTGCAGCTAACGGGCAGTTTGTTAGCCAGGCTGTGGATGTCCTGCTGGACCTCATCATGAAGAGGATGGAGCGCTGTGTGGACAAGTCCTGGATCCCTGATGGAACCGTGCGATCCAACGGACACAGTGGTCACACAGACATCACAGAGCCCAAGACCCAGGAGAAGGGCAAATGTGCTTGTTAGGGTCCACATACAGATAGTGGTTACACCTTCAGTTCCCTTCAGTGATGTTTTGGTAGGACTGGGCTGTATGGCATGTGATGAAAGGCATGTAACATTTGTAAATCAATGGTGTCATAGGAAGTTTTGTCAAGGTGGGGGGGTGTTTATGATGTGCAAAGCTGAAAGTAACCACTAACCCCTGCCAAATGTGCAAGAGCATTATTGTGTTTTGTTAATTTGATTATGCCATTTGGAGTGGTGCCTCCATTCACGTGTCAATTAAGTGCCTTTTATGTTTTCATTTCAGATAATATTATATGCATTTTACATTGTGAAACATAAAAGTGTATTGTAACTACTTTCTAAGATCCAGTAGAATTGTGAGAAGCCACTGAAAGTTGTATTAGTTGAGAACACTTCCCTGTGTATTAAAGGGAACCCACCCTTATTACATTTAACTTTTTgacacaggatatttttgtgaCAATGCACTTCCATTTATTCTTGTACAATGTAAAAGTCCTGAGCACATGCAATCTGTAGTGAATAGAGTGATTTATTGTATAGTTCTGCTCTGTAGTATCTGAGTAGCAGAGTCATTTGGGGTCTTTCTTTTTATCACGATGTCGGGATCTTGGGTCTATCAGAAATGTTTGAGGTTCCACGTAAATCCATGCTGATTTTGTTACACAATGTGCATTAAATCTGCTGTATTCTGTCAAACACTTTTGTCAAATATGTTAACCATATCCTTTATTccagaaaataaatattttattatttattaaa
>XM_021607417.2
aaaatgctgggcaggccattttCTTGGCTACCATGACCATGTCCCCATGTTTTTTATTGAGTTGGTACAGTTAtaatttttctttcactttgagaATGTGGAGTAGGTTCTATAGACCGGTCTGAAATAAGCACTCACTATGTCTGATGGGGACTATGATTACCTCATCAAATTCCTAGCCCTTGGTGATTCTGGAGTGGGGAAAACCAGCTTTCTGTACCAGTACACAGACAAAAAGTTTAACTCCAAATTCATCACTACAGTGGGCATTGATTTCAGAGAAAAACGAGTGgtATACAAATCAAATGGTCCAGAAGGGGCAGCAGGCAGAGGACAGAGGATTCATGTTCAGCTGTGGGACACGGCAGGGCAGGAGAGGTTTCGGAGTTTGACAACAGCTTTCTTCCGAGATGCGATgggcttcctcctcctctttgaccTCACCAATGAGCAGAGTTTCCTTAATGTCAGAAATTGGATGAGTCAATTACAGATGCATGCTTACTGCGAGAATCCAGATGTTGTTCTCTGTGGCAACAAGTGTGACCTACAGGAGCAGAGGGCAGTCCGTGAAGATGAGGCCCGTGAGTTGGCAGAGAAGTATGGAATCCCTTACTTTGAGACAAGTGCAGCTAACGGGCAGTTTGTTAGCCAGGCTGTGGATGTCCTGCTGGACCTCATCATGAAGAGGATGGAGCGCTGTGTGGACAAGTCCTGGATCCCTGATGGAACCGTGCGATCCAACGGACACAGTGGTCACACAGACATCACAGAGCCCAAGACCCAGGAGAAGGGCAAATGTGCTTGTTAGGGTCCACATACAGATAGTGGTTACACCTTCAGTTCCCTTCAGTGATGTTTTGGTAGGACTGGGCTGTATGGCATGTGATGAAAGGCATGTAACATTTGTAAATCAATGGTGTCATAGGAAGTTTTGTCAAGGTGGGGGGGTGTTTATGATGTGCAAAGCTGAAAGTAACCACTAACCCCTGCCAAATGTGCAAGAGCATTATTGTGTTTTGTTAATTTGATTATGCCATTTGGAGTGGTGCCTCCATTCACGTGTCAATTAAGTGCCTTTTATGTTTTCATTTCAGATAATATTATATGCATTTTACATTGTGAAACATAAAAGTGTATTGTAACTACTTTCTAAGATCCAGTAGAATTGTGAGAAGCCACTGAAAGTTGTATTAGTTGAGAACACTTCCCTGTGTATTAAAGGGAACCCACCCTTATTACATTTAACTTTTTgacacaggatatttttgtgaCAATGCACTTCCATTTATTCTTGTACAATGTAAAAGTCCTGAGCACATGCAATCTGTAGTGAATAGAGTGATTTATTGTATAGTTCTGCTCTGTAGTATCTGAGTAGCAGAGTCATTTGGGGTCTTTCTTTTTATCACGATGTCGGGATCTTGGGTCTATCAGAAATGTTTGAGGTTCCACGTAAATCCATGCTGATTTTGTTACACAATGTGCATTAAATCTGCTGTATTCTGTCAAACACTTTTGTCAAATATGTTAACCATATCCTTTATTccagaaaataaatattttattatttattaaa

Function

NR:

description
ras-related protein Rab-27A-like

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0015031 protein transport biological_process
GO:0005525 GTP binding molecular_function

KEGG:

id description
K07885 RAB27A; Ras-related protein Rab-27A

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607416.2 False 1594 mRNA 0.42 6 68627574 68640613
XM_021607415.2 False 1677 mRNA 0.42 6 68630014 68640613
XM_021607417.2 True 1579 mRNA 0.42 6 68633659 68640613

Neighbor

gene id symbol gene type direction distance location
LOC110526427 ccpg1 coding upstream 3686 68605596 ~ 68623888 (+)
LOC110526429 LOC106587430 coding upstream 24121 68597118 ~ 68603453 (+)
LOC110526426 LOC106587432 coding upstream 31991 68550900 ~ 68595583 (+)
LOC110526425 LOC106587433 coding upstream 81425 68495029 ~ 68546149 (+)
LOC110526423 LOC106587434 coding upstream 142855 68441334 ~ 68484719 (+)
LOC110526432 LOC106587425 coding downstream 177 68640790 ~ 68644591 (+)
LOC110526434 cog4 coding downstream 4215 68644828 ~ 68664392 (+)
LOC110526436 LOC107688027 coding downstream 38704 68679317 ~ 68681675 (+)
LOC110526444 LOC106587414 coding downstream 134861 68775474 ~ 68780317 (+)
LOC110526448 tha11 coding downstream 176326 68816939 ~ 68818769 (+)
G538507 pigb non-coding upstream 797 68626445 ~ 68626777 (+)
G538010 NA non-coding upstream 78084 68549132 ~ 68549490 (+)
G538008 NA non-coding upstream 80098 68547156 ~ 68547476 (+)
G538021 NA non-coding upstream 101285 68487682 ~ 68526289 (+)
G538011 NA non-coding upstream 102307 68517754 ~ 68525267 (+)
G538554 NA non-coding downstream 55094 68695707 ~ 68695910 (+)
G538555 NA non-coding downstream 56262 68696875 ~ 68697228 (+)
G538559 NA non-coding downstream 62012 68702625 ~ 68702966 (+)
G538562 NA non-coding downstream 64152 68704765 ~ 68705103 (+)
G538563 NA non-coding downstream 64575 68705188 ~ 68705423 (+)
G537617 atxn1l other upstream 859961 67766756 ~ 67767613 (+)
G537606 NA other upstream 870956 67754556 ~ 67756618 (+)
G537032 LOC106587324 other upstream 1516946 67109676 ~ 67110628 (+)
G537029 zfhx3 other upstream 1522666 67104306 ~ 67104908 (+)
G536995 zfhx3 other upstream 1608921 67013220 ~ 67018653 (+)
G538561 NA other downstream 63785 68704398 ~ 68704696 (+)
G538607 NA other downstream 170506 68811119 ~ 68811890 (+)
G538859 NA other downstream 265432 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 355470 68996083 ~ 69002828 (+)

Expression


Co-expression Network