LOC110526432 (LOC106587425)



Basic Information


Item Value
gene id LOC110526432
gene name LOC106587425
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information


Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68640790 ~ 68644591 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence


>XM_021607418.2
ACGAAAATATTTATTTACCGGAAATAGTATATCGTAACTTCCTTTTAAAATCATGCCACTCGCATTCCACCAGGGATAACACATGGGTATTAAATAATACAGAAATCTAACGATGCGAATTGAAAAATGTTACTTTTGTTCGGGACCTGTGTATCCCGGGCACGGTACGATGTTTGTGCGGAACGATTGcaagACGTTCAGGTTTTGTAAATCAAAATGCCTCAAAAACTTCAAGAAGAAGCGTAATCCAAGAAAGACCAGATGGACCAAGGCTTTCAGGAAAGCATCGGGCAAGGAATTGACAGTGGATAACTGCTTGGAGTTCGAGAAGCGCAGAAATGTGGCCGTCAAGTACCAGAGGGAATTGTGGAGCAAGACAGTGGAGGCAATGAGGAAGGTGGAAGGAATAAAACGGAAACGACAGGCACAGTTCATCTTCAACAGACTGAAGAAGGGCAAGCAGTTGGAAAAGGAGGAAGCCATCAGCGAAGTGAAGAAGAACATTCACCTCATCAAAGCCCCACATGCAGGCAAAACCAAGGTTATGGAGGAGAAGATGGTGCAGAAGTTACAAGATGTGGAAATGGGTGACGATTAGCAAGTCCTTATTGGGGCTCTGCTGAAATAGAGACCTACAAAGCAACCACAGGCTCTATTCATAACATCCATAGACTTTCCTTTACCATACTCTGGACACCATTCTGTGAAGAAACAACCATATATGTGCAGTTCTGGGGTGCTAACACAATATTAAACACTTAGAACATTTTGTGGAGTGTTGTCAAATGATGAATTGAATAAAGTATTGTGTCCTGA

Function


NR:

description
probable ribosome biogenesis protein RLP24

GO:

id name namespace
GO:0042254 ribosome biogenesis biological_process

KEGG:

id description
K02896 RP-L24e, RPL24; large subunit ribosomal protein L24e

RNA


RNA id representative length rna type GC content exon number start site end site
XM_021607418.2 True 816 mRNA 0.42 6 68640790 68644591

Neighbor


gene id symbol gene type direction distance location
LOC110526430 LOC106587426 coding upstream 177 68627574 ~ 68640613 (+)
LOC110526427 ccpg1 coding upstream 16902 68605596 ~ 68623888 (+)
LOC110526429 LOC106587430 coding upstream 37337 68597118 ~ 68603453 (+)
LOC110526426 LOC106587432 coding upstream 45207 68550900 ~ 68595583 (+)
LOC110526425 LOC106587433 coding upstream 94641 68495029 ~ 68546149 (+)
LOC110526434 cog4 coding downstream 237 68644828 ~ 68664392 (+)
LOC110526436 LOC107688027 coding downstream 34726 68679317 ~ 68681675 (+)
LOC110526444 LOC106587414 coding downstream 130883 68775474 ~ 68780317 (+)
LOC110526448 tha11 coding downstream 172348 68816939 ~ 68818769 (+)
LOC110526954 cmtr2 coding downstream 204080 68848671 ~ 68856233 (+)
G538507 pigb non-coding upstream 14013 68626445 ~ 68626777 (+)
G538010 NA non-coding upstream 91300 68549132 ~ 68549490 (+)
G538008 NA non-coding upstream 93314 68547156 ~ 68547476 (+)
G538021 NA non-coding upstream 114501 68487682 ~ 68526289 (+)
G538554 NA non-coding downstream 51116 68695707 ~ 68695910 (+)
G538555 NA non-coding downstream 52284 68696875 ~ 68697228 (+)
G538559 NA non-coding downstream 58034 68702625 ~ 68702966 (+)
G538562 NA non-coding downstream 60174 68704765 ~ 68705103 (+)
G538563 NA non-coding downstream 60597 68705188 ~ 68705423 (+)
G537617 atxn1l other upstream 873177 67766756 ~ 67767613 (+)
G537606 NA other upstream 884172 67754556 ~ 67756618 (+)
G537032 LOC106587324 other upstream 1530162 67109676 ~ 67110628 (+)
G537029 zfhx3 other upstream 1535882 67104306 ~ 67104908 (+)
G536995 zfhx3 other upstream 1622137 67013220 ~ 67018653 (+)
G538561 NA other downstream 59807 68704398 ~ 68704696 (+)
G538607 NA other downstream 166528 68811119 ~ 68811890 (+)
G538859 NA other downstream 261454 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 351492 68996083 ~ 69002828 (+)

Expression



Co-expression Network