LOC110526434 (cog4)


Basic Information

Item Value
gene id LOC110526434
gene name cog4
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68644828 ~ 68664392 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607420.2
GCCCGTGCACTTACTGCGCGAGCGAACGCGGAAGTGACACGTTTTCTGTTTATGTGAGAAAAAGATGGCCGAGAGCAGCCCCATAGCAGTGAAGCGATGCGATTCTGCATGTGTATATGCCGTGAGCATGGAGGCTATCTCAGCTCTGACGGAGCTGGATGATCTGGAGCGGGTCTACCAGCAACTCTGCACCGAGGAGAAAAAGGTGGAGACTGAGCTGGAGAAGTTGGTTGGGCAGCAGGGGAACATTGACACCAAGATGCTCGCTCTTCAAAGgatgggGCCCAACCTGCAGCTGATAGGAGGAGATGCCAGTCAGCTGTCTGGCATGATTACCTTCACCTGCAGCCTGGCAGAGAATGTCAGCAGCAAAGTCCGCCAGCTAGACCTGGCGAAGACCCGGCTTTATAAGGTTATCCAGCGGGCTGATGACATCCTGGACCTGAAGTTCTGTACAGACGGCGTTCAGACGGCGCTACACAATGAGGACTATGAACAGGCTGCTGCCCACATCCACCGCTACCTTTCTCTCGACCAATCAGTCATTGAGCTAAGTCGCCAAGGAGAAGAGAGCAGTGCTGTGGACGCTAGCCTGGCCATGCTTCAAGAGGCAGAGCAGCGATTGAAAGTCCTGGTTGCggacagactggatgaggctgttaCCAGGGGTGATCTGGCGCAGGTGGAAAGATTCTTTAAAATCTTCCCTCTGCTTGGCCTCCACGAGCAAGGCCTGGCTCGCTTTGGCCAGTACCTCTGCAGCCAGctggcctCTAAAGCAGATGAGAACCTGCTCTTGGCTGTGGGAGGagagctgggagagaggagagctgccCTGGTCTTTGCTGACACCCTGACTCTGCTGCTGGAGGGCATAGCTCGTGTTGTGGAGACCCACCAGCCCATCGTAGAGACGTACTACGGTCCAGGCTACCTGTATACTCTCATCACTCACCTGCAGCAGGAGTGTGACCGACAAGCCCAGAAAGTAGTTGACAAGTTCATCCAACAGAGAGACTACCACAACAAGTTTCAGATCGTCCAGAGCAGCATGATGAAGAGTGTGCCCACTGAGAGGATTGAACCCAGggagctGGATCCTGTATTACTGGAAGTCACTCTGATGAATGCCAGGTCGGAGCTTTACTTAAGATTCCTGCGCCGTCGCATGATGGCTGACTTCGAGGTTGGGGATGCTACGGCAACACCTGGCATCGTCCAAGAGCACAAGCATAATGTGGAGAAACTGCTGAAACACTGCATGCTGGGCCAGCTCATGCAGGAGCTGATTGGCTACTACATTCCAATGGAGGAGTACTACATGAGGGAGACCGTCAGCAAGGCTGTAGCTATGGATACATATGAGAAGGGTCAGCTGACATCCAGCATGGTGGATGACTGTTTCTACATTGTGAAGAAGTGCATCAGCAGAGCTCTGTCCAGCTCCAGCATTGACTGTCTGTGTGCCATGATCAACCACTCAACCTCAGTGCTAGAGTCTGACTTCAGggaggtgttgtataataaGCTGAGGCAGGGCTTCCCTGCGACCACGCTGCAGGACATCCAGCGTGGGGTGAGCAGTGCAGTGAGTCTGATGCAGAGCAGCCTGCAGCAGGGCAAGTTCAACAACCTGGGCATTGACAGCGCAGAGGTCGCCAAGGCTGCCTTCCTGGTGACTCTGAATAACGTGGAGGTGTGTAGTGAGAACATCACCACTCTGAAGAGGAACCTGGAGagcGATTGCTCCAAGTTGTTCACTCAGGGGGCGGGATCAGGAGAGCAAGCTAAGATTGACAGCTGTCTGTCAGACCTCGTCAACACGTCCAGCAAGTTCAAGGATCTCTTGCAGGAGGGCCTGACGGAGCTGAACACCACAGCCATCAAGCCTCAGGTCAAACCGTGGATCAGCAGCTTCCTGTCCATCTCACACAGCATAGAGGagGAGGAGTTTAATGAGTACGAGGCCAATGACCCCTGGGTCCAGCAGCTCATCGTCAACCTCGAGCAGCTCATGGCAGAGTTCAAGgCGGGGCTCTCTTCAGTTATCTACGACACACTGACCAGCCTCATGACCAGTTTGGTCTCCATGGAGATGGAGAAGACCGTCCTGAAGTGCACCTTCAGCAGGCTGGGAGGGCTTCAGTTTGATAAGGAGCTGCGTTCTCTGGTGGCCTACCTCACTACTGTCACCACCTGGACTATTAGGGACAAGTTTGCTCGGCTCACTCAGATGGCCACCATCCTCAACCTGGAGCGGGTAACAGAGATCCTGGATTACTGGGGCCCGAACTCTGGTCCTCTAACTTGGCGTCTCACTCCAGCGGAGGTCCGGCAGGTTCTGGCACTCCGCATCGATTTCCGCAGTGAGGACATCAAGAGGCTCCGCCTCTAACCCTGCTACCCAGAGAATGTGCTGGTGCACATATTTACATGGGACTAGACTCATGCTGATTGGTCTTTGAGGAAAAAGAGGAGTGTGCAGGTGGATCCCCTGAGAGGAAGTCCCTGCTGCTCCTAACCTCTGCTGGCCTCATAGGAGGCGGAGGAAGAGGTTGCCCCTAACTACAAATACAGTGATAGATATTTGTTTTACCCCCAAATGGTTACAGTTAGGTTTGAGGTAGggtgatctgatcctagatctgtagttAATGCTACTTCTACCTCATACAGCCAATCAGAGCCAGGAGTAACAGCAGTAATGGAACTATGGGATTGTGGAACAGTGGGATTATGGATTTGAGCCTTTGGGCTTGGATTAATGAATATTATGCAACATATTAAATGTAAAATATTAAAGTGTTCTCTCGAAGA

Function

symbol description
cog4 Acts upstream of or within proteoglycan metabolic process and skeletal system development. Predicted to be located in Golgi membrane and cytosol. Predicted to be part of Golgi transport complex. Is expressed in nervous system; otic epithelium; otic vesicle protrusion; and pharyngeal arch cartilage. Used to study Saul-Wilson syndrome. Human ortholog(s) of this gene implicated in Saul-Wilson syndrome and congenital disorder of glycosylation type IIj. Orthologous to human COG4 (component of oligomeric golgi complex 4).

NR:

description
PREDICTED: conserved oligomeric Golgi complex subunit 4

GO: NA

KEGG:

id description
K20291 COG4, COD1; conserved oligomeric Golgi complex subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607420.2 True 2817 mRNA 0.53 19 68644828 68664392

Neighbor

gene id symbol gene type direction distance location
LOC110526432 LOC106587425 coding upstream 237 68640790 ~ 68644591 (+)
LOC110526430 LOC106587426 coding upstream 4215 68627574 ~ 68640613 (+)
LOC110526427 ccpg1 coding upstream 20940 68605596 ~ 68623888 (+)
LOC110526429 LOC106587430 coding upstream 41375 68597118 ~ 68603453 (+)
LOC110526426 LOC106587432 coding upstream 49245 68550900 ~ 68595583 (+)
LOC110526436 LOC107688027 coding downstream 14925 68679317 ~ 68681675 (+)
LOC110526444 LOC106587414 coding downstream 111082 68775474 ~ 68780317 (+)
LOC110526448 tha11 coding downstream 152547 68816939 ~ 68818769 (+)
LOC110526954 cmtr2 coding downstream 184279 68848671 ~ 68856233 (+)
LOC110526451 LOC106587405 coding downstream 217198 68881590 ~ 68899511 (+)
G538507 pigb non-coding upstream 18051 68626445 ~ 68626777 (+)
G538010 NA non-coding upstream 95338 68549132 ~ 68549490 (+)
G538008 NA non-coding upstream 97352 68547156 ~ 68547476 (+)
G538021 NA non-coding upstream 118539 68487682 ~ 68526289 (+)
G538554 NA non-coding downstream 31315 68695707 ~ 68695910 (+)
G538555 NA non-coding downstream 32483 68696875 ~ 68697228 (+)
G538559 NA non-coding downstream 38233 68702625 ~ 68702966 (+)
G538562 NA non-coding downstream 40373 68704765 ~ 68705103 (+)
G538563 NA non-coding downstream 40796 68705188 ~ 68705423 (+)
G537617 atxn1l other upstream 877215 67766756 ~ 67767613 (+)
G537606 NA other upstream 888210 67754556 ~ 67756618 (+)
G537032 LOC106587324 other upstream 1534200 67109676 ~ 67110628 (+)
G537029 zfhx3 other upstream 1539920 67104306 ~ 67104908 (+)
G536995 zfhx3 other upstream 1626175 67013220 ~ 67018653 (+)
G538561 NA other downstream 40006 68704398 ~ 68704696 (+)
G538607 NA other downstream 146727 68811119 ~ 68811890 (+)
G538859 NA other downstream 241653 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 331691 68996083 ~ 69002828 (+)

Expression


Co-expression Network