LOC110526436 (LOC107688027)


Basic Information

Item Value
gene id LOC110526436
gene name LOC107688027
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68679317 ~ 68681675 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_002473955.2
cacacacacacacacacacacacacacacacacacgctcaccaaTGCATACATGTAAGCAACATAAGACacacaaatgcatccaacaagtttgtggtcacaagcttgatgtaatcattgtgtgctaggaatatgggacctaTACAAAacatttgactactttaatacacattagtgaatttgtcccaatcattttggtcccctaaaatggggggactacagtatgtacaaaaagtgctgacATTTCTAAACGGCTAACCTGATATGATCCTCAAATTACAGTTTTTTTCCAATTGCTAACACACTAAAATGACATGCACAGCACAATTATTTAAACTGACACACAGAGAGCAAAACCTCTTCTCAAGTCTCCAAAAGTCTAAACACTTTTTCTGCTTTACACACATTTTGCAATTCAAAATGGCACTTTTTAAATGCACTGCACATGGTTCTCTGCATAAGACACAACAATCTGACATAAAGTCACATGTTTGCCATTTCAAACACTGCCAttcaaaatgacactacatgagCTAATTGGCCAATACATGTGCCACCTGGCCAAACACCTCAATGGTTAAATGTTACCACTTCAATCAGGAAGTAAGCACTATGAAAAGGCCACAGGTGAGCACCTTTTGTTTTACAACAACAATGGAAGCCgttgcagagagaggaagaggaagaggaagagggagggtgagaatgagagggggaggaagagtgagaggtATGGGTAGAGCTGGTAGAGGAGTTCACGGCCAAAGAAGACAACTTTCAAATGAAATCAGAGCAACCTTAGTTGATCATGTCATCAACCATGGGCTGACAATGTGAGAGGCTGGACAGAGAGTGCAGCCCAACTTGAGCCATTTTACTGTCGCCTGTGTCATTGAGACTGGAGTACAGGACTGAGAGACGCAACCATGGTAGAGGAAGGGGCCAAATGTTCACCGGGGTACAGGAAGCTGCCATTGTAAACTTGGTTTTGGAAAATAATGAAATCAGATTACAAGAAATTCAAAGCCACATCATCCAAGACAACACCATATTCAACAACATTCAACGAGTCAGTCTGTCCACATTGGCTCGCATTCTCAAGTGAAACCAAATCAGAATGAAACAACTTTATAAGGTGCCGTTTGAGAGAAACTCTCAAAGAAACAAAGAGGTCAGACGAGCATATGTGGATGGAGTACTGGAAATGGATGCTCATGCAATCCCACATGAGTTCATCtttatagatgaggctgggttcaaTCTAGCAAAGACCAGAAGAAGGGGGAGAAACGTCATTGGCCACAGAGCCATTATAGATGTTCCTGGCCAACGTGGTGGGAACATCACAATGTGTGCTGCCATCTCCAATACGCATGGTGTCCTCCACCGGAATGCCAACCTTGGACCATACAACACAGCCCATATTCTCACATTTCTGGACAGACTCCACAACATTCTCATACCACCAGAGCGTATGAATGATGCAGACCATCAAAGAACCCGGTACGTTGTAGTATGGGACAACATGAGCTTTCATTGTGCAGCCCCAGTCCAAAACTGGTTTGCTGACCACCCACCATTTCTCGTGCAATACCTCCCACCATACTCACCATTTCTGAACCTCATAGAAGAGTTGTTTTCGGCATGGCGATGGAAGGAATACGACTGGCAGCCCTTTGTGAACATGCCTCTTGTGCAGGCTATGGAAGAGGCACGTGATGAGATTGATGTGGGTGCGAttcagggatggataaggcactcaaGGCACTTCTTCCCTCGATGTCTGGCAAGGGAAGATATTgcctgtgatgtggacgaggcgttgtggccagacccagctgtgatgtggacaaggcgttgtggccagacccagctgtgatgtggacgaggcgttgtg
>TU609823
ACATAAGACacacaaatgcatccaacaagtttgtggtcacaagcttgatgtaatcattgtgtgctaggaatatgggacctaTACAAAacatttgactactttaatacacattagtgaatttgtcccaatcattttggtcccctaaaatggggggactacagtatgtacaaaaagtgctgacATTTCTAAACGGCTAACCTGATATGATCCTCAAATTACAGTTTTTTTCCAATTGCTAACACACTAAAATGACATGCACAGCACAATTATTTAAACTGACACACAGAGAGCAAAACCTCTTCTCAAGTCTCCAAAAGTCTAAACACTTTTTCTGCTTTACACACATTTTGCAATTCAAAATGGCACTTTTTAAATGCACTGCACATGGTTCTCTGCATAAGACACAACAATCTGACATAAAGTCACATGTTTGCCATTTCAAACACTGCCAttcaaaatgacactacatgagCTAATTGGCCAATACATGTGCCACCTGGCCAAACACCTCAATGGTTAAATGTTACCACTTCAATCAGGAAGTAAGCACTATGAAAAGGCCACAGGTGAGCACCTTTTGTTTTACAACAACAATGGAAGCCgttgcagagagaggaagaggaagaggaagagggagggtgagaatgagagggggaggaagagtgagaggtATGGGTAGAGCTGGTAGAGGAGTTCACGGCCAAAGAAGACAACTTTCAAATGAAATCAGAGCAACCTTAGTTGATCATGTCATCAACCATGGGCTGACAATGTGAGAGGCTGGACAGAGAGTGCAGCCCAACTTGAGCCATTTTACTGTCGCCTGTGTCATTGAGACTGGAGTACAGGACTGAGAGACGCAACCATGGTAGAGGAAGGGGCCAAATGTTCACCGGGGTACAGGAAGCTGCCATTGTAAACTTGGTTTTGGAAAATAATGAAATCAGATTACAAGAAATTCAAAGCCACATCATCCAAGACAACACCATATTCAACAACATTCAACGAGTCAGTCTGTCCACATTGGCTCGCATTCTCAAGTGAAACCAAATCAGAATGAAACAACTTTATAAGGTGCCGTTTGAGAGAAACTCTCAAAGAAACAAAGAGGTCAGACGAGCATATGTGGATGGAGTACTGGAAATGGATGCTCATGCAATCCCACATGAGTTCATCtttatagatgaggctgggttcaaTCTAGCAAAGACCAGAAGAAGGGGGAGAAACGTCATTGGCCACAGAGCCATTATAGATGTTCCTGGCCAACGTGGTGGGAACATCACAATGTGTGCTGCCATCTCCAATACGCATGGTGTCCTCCACCGGAATGCCAACCTTGGACCATACAACACAGCCCATATTCTCACATTTCTGGACAGACTCCACAACATTCTCATACCACCAGAGCGTATGAATGATGCAGACCATCAAAGAACCCGGTACGTTGTAGTATGGGACAACATGAGCTTTCATTGTGCAGCCCCAGTCCAAAACTGGTTTGCTGACCACCCACCATTTCTCGTGCAATACCTCCCACCATACTCACCATTTCTGAACCTCATAGAAGAGTTGTTTTCGGCATGGCGATGGAAGGAATACGACTGGCAGCCCTTTGTGAACATGCCTCTTGTGCAGGCTATGGAAGAGGCACGTGATGAGATTGATGTGGGTGCGAttcagggatggataaggcactcaaGGCACTTCTTCCCTCGATGTCTGGCAAGGGAAGATATTgcctgtgatgtggacgaggcgttgtggccagacccagctgtgatgtggacaaggcgttgtggccagacccagc

Function

NR:

description
PREDICTED: uncharacterized protein LOC107688027

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002473955.2 False 1896 mRNA 0.45 3 68679317 68681675
TU609823 True 1813 TUCP 0.45 3 68679377 68681652

Neighbor

gene id symbol gene type direction distance location
LOC110526434 cog4 coding upstream 14925 68644828 ~ 68664392 (+)
LOC110526432 LOC106587425 coding upstream 34726 68640790 ~ 68644591 (+)
LOC110526430 LOC106587426 coding upstream 38704 68627574 ~ 68640613 (+)
LOC110526427 ccpg1 coding upstream 55429 68605596 ~ 68623888 (+)
LOC110526429 LOC106587430 coding upstream 75864 68597118 ~ 68603453 (+)
LOC110526444 LOC106587414 coding downstream 93799 68775474 ~ 68780317 (+)
LOC110526448 tha11 coding downstream 135264 68816939 ~ 68818769 (+)
LOC110526954 cmtr2 coding downstream 166996 68848671 ~ 68856233 (+)
LOC110526451 LOC106587405 coding downstream 199915 68881590 ~ 68899511 (+)
LOC110526452 LOC106587404 coding downstream 241163 68922838 ~ 68936761 (+)
G538507 pigb non-coding upstream 52540 68626445 ~ 68626777 (+)
G538010 NA non-coding upstream 129827 68549132 ~ 68549490 (+)
G538008 NA non-coding upstream 131841 68547156 ~ 68547476 (+)
G538021 NA non-coding upstream 153028 68487682 ~ 68526289 (+)
G538554 NA non-coding downstream 14032 68695707 ~ 68695910 (+)
G538555 NA non-coding downstream 15200 68696875 ~ 68697228 (+)
G538559 NA non-coding downstream 20950 68702625 ~ 68702966 (+)
G538562 NA non-coding downstream 23090 68704765 ~ 68705103 (+)
G538563 NA non-coding downstream 23513 68705188 ~ 68705423 (+)
G537617 atxn1l other upstream 911704 67766756 ~ 67767613 (+)
G537606 NA other upstream 922699 67754556 ~ 67756618 (+)
G537032 LOC106587324 other upstream 1568689 67109676 ~ 67110628 (+)
G537029 zfhx3 other upstream 1574409 67104306 ~ 67104908 (+)
G536995 zfhx3 other upstream 1660664 67013220 ~ 67018653 (+)
G538561 NA other downstream 22723 68704398 ~ 68704696 (+)
G538607 NA other downstream 129444 68811119 ~ 68811890 (+)
G538859 NA other downstream 224370 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 314408 68996083 ~ 69002828 (+)
LOC110526955 LOC106587395 other downstream 329931 69007055 ~ 69018414 (+)
G538011 NA non-coding upstream 154110 68517754 ~ 68525267 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location