tradd (LOC100136668)


Basic Information

Item Value
gene id tradd
gene name LOC100136668
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68683171 ~ 68695735 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036979131.1
TGGCTTACAAATAATTTGCAGGAAGGAAGACGCTTGAAGGGAACACAGAAGAAGCTTGTGACAGCTGAGGTCAGATGACGGGAATGCTCAAACAATGGACATAATGGATGAAAAGAAAATGGTGGCACTGAGTGTGGAGGTTGGCCCGTGGACAGGATGTGCGGTTCTCTTCCTGCGCTCCTGTCCCGCAGTgaacctgctctctctctacaAAGACCAGCAGGGCAAGTTCAGCGTCTTCAAAGTCCTCAAGCTGACACTCACAGACTCAGCTGGGGGGCTGGAGGGGTACGAGATCCTAAAGCTGCACGATGCAGATCCTCTGCTGGGTGTGGAGGTGAAGTTTGTGGATGTGGCGGCGTGCCGCAGGTTCCTGCAGAGCTATGGCTCCGGTGCCGTACAACAGTCCCTCTCCCAGCACACCTGCCGCCTCCTCCACATCCCACAACAGGAGCTTGCCTTGGAAACCCAGCTCAAAGCCGGGACGCACACTTTGGACTTTTGTCTGGACGACCTGGAGCTCTGTCTGCAGCACATCCACCAGTCACAGCCAGAGCGCCTACGGGATGATGAGATTGCTGAGCTGGACCAGCAGCTGCAGAGCCAGGCCTTGGGTCACATTCCCCAGCCACCCACCCTCACACAGGAAGAGCCCCCCGTGCCCAGCAACTGTTTCCTGTTCCAGAAGAGGGTGTTTGAGGACCGCATGCTGGCGGCGGGGGACCTGCAGCGGTTCTCCAACGGCGTTGGGCGGGACTGGAGGAAAGTGGGGCGGGCCTTGGGCAAGAACTGCCGTGCGCTGAAGGGGCCGGCCATAGACAACCTGGCCTACGAGTATGAGAGGGAGGGGCTGTATGAGCAGGCCTATCAGCTGCTGAGCCGCTTCATCCAGGCGGAGGGGAGGGCGGCACGACTGGGCCGGCTGGTCAGAGCACTGGAAGACAGCAAACTCACTAGCCTGGCTGAGAACATTTTGGACATCCAGCCCCGGGATTGACactgtctgtcacactgtctgacggtgtgtgttggtctgtgtgtgtgcatctgtgtctgtgtgaaagAGTGGTAACGTGTGGGTGGCATTGTTTGTGTGAGCGCAAACGTGTGTGCACTAACTTACCTAGGTGCTACCATGTGTCAGTTCTGTGTGAGCTTCGTGTCTGTGAGCTtgattgtatgttttttttattggagTAAAAATGTCTTGTGTTACAAAACCAATAGTTCTCATAATTGCTATGTCACGTCATTGTTGTCTCTGGTTGGAGAGCAAACTAAAATCACTGTGGGCCTTTTCTTCTGCTttaaacccaaccccctttctccACCACAGACTGGACCATTGATGCATTTGATCATTCTACCAATAACCTAGATTGATATTGAACAATTTGCAATGGGATTGTGGAATATTTGTTCCAAATTTCAAATAAAGTGTTGGATTTATAAAAACGAA
>XM_021604936.2
ACTGTATCTGTGTTTTCCTGTGGTCAGGTCGTGTTGCCGTCCTTACAACATTTTTTTCTTTGAAGataggaagaggaggacagatgAGAACAGCAGGCCAGTGGAGCAATTAGAACAGAAGCAGCCAGTGGCAAATGGAAGGAAGACGCTTGAAGGGAACACAGAAGAAGCTTGTGACAGCTGAGGTCAGATGACGGGAATGCTCAAACAATGGACATAATGGATGAAAAGAAAATGGTGGCACTGAGTGTGGAGGTTGGCCCGTGGACAGGATGTGCGGTTCTCTTCCTGCGCTCCTGTCCCGCAGTgaacctgctctctctctacaAAGACCAGCAGGGCAAGTTCAGCGTCTTCAAAGTCCTCAAGCTGACACTCACAGACTCAGCTGGGGGGCTGGAGGGGTACGAGATCCTAAAGCTGCACGATGCAGATCCTCTGCTGGGTGTGGAGGTGAAGTTTGTGGATGTGGCGGCGTGCCGCAGGTTCCTGCAGAGCTATGGCTCCGGTGCCGTACAACAGTCCCTCTCCCAGCACACCTGCCGCCTCCTCCACATCCCACAACAGGAGCTTGCCTTGGAAACCCAGCTCAAAGCCGGGACGCACACTTTGGACTTTTGTCTGGACGACCTGGAGCTCTGTCTGCAGCACATCCACCAGTCACAGCCAGAGCGCCTACGGGATGATGAGATTGCTGAGCTGGACCAGCAGCTGCAGAGCCAGGCCTTGGGTCACATTCCCCAGCCACCCACCCTCACACAGGAAGAGCCCCCCGTGCCCAGCAACTGTTTCCTGTTCCAGAAGAGGGTGTTTGAGGACCGCATGCTGGCGGCGGGGGACCTGCAGCGGTTCTCCAACGGCGTTGGGCGGGACTGGAGGAAAGTGGGGCGGGCCTTGGGCAAGAACTGCCGTGCGCTGAAGGGGCCGGCCATAGACAACCTGGCCTACGAGTATGAGAGGGAGGGGCTGTATGAGCAGGCCTATCAGCTGCTGAGCCGCTTCATCCAGGCGGAGGGGAGGGCGGCACGACTGGGCCGGCTGGTCAGAGCACTGGAAGACAGCAAACTCACTAGCCTGGCTGAGAACATTTTGGACATCCAGCCCCGGGATTGACactgtctgtcacactgtctgacggtgtgtgttggtctgtgtgtgtgcatctgtgtctgtgtgaaagAGTGGTAACGTGTGGGTGGCATTGTTTGTGTGAGCGCAAACGTGTGTGCACTAACTTACCTAGGTGCTACCATGTGTCAGTTCTGTGTGAGCTTCGTGTCTGTGAGCTtgattgtatgttttttttattggagTAAAAATGTCTTGTGTTACAAAACCAATAGTTCTCATAATTGCTATGTCACGTCATTGTTGTCTCTGGTTGGAGAGCAAACTAAAATCACTGTGGGCCTTTTCTTCTGCTttaaacccaaccccctttctccACCACAGACTGGACCATTGATGCATTTGATCATTCTACCAATAACCTAGATTGATATTGAACAATTTGCAATGGGATTGTGGAATATTTGTTCCAAATTTCAAATAAAGTGTTGGATTTATAAAAACGAA
>XM_021604935.2
CTGTAACCAATTGCCTGTCGGGAAATTATTACTGTATCTGTGTTTTCCTGTGGTCAGGTCGTGTTGCCGTCCTTACAACATTTTTTTCTTTGAAGGAAGGAAGACGCTTGAAGGGAACACAGAAGAAGCTTGTGACAGCTGAGGTCAGATGACGGGAATGCTCAAACAATGGACATAATGGATGAAAAGAAAATGGTGGCACTGAGTGTGGAGGTTGGCCCGTGGACAGGATGTGCGGTTCTCTTCCTGCGCTCCTGTCCCGCAGTgaacctgctctctctctacaAAGACCAGCAGGGCAAGTTCAGCGTCTTCAAAGTCCTCAAGCTGACACTCACAGACTCAGCTGGGGGGCTGGAGGGGTACGAGATCCTAAAGCTGCACGATGCAGATCCTCTGCTGGGTGTGGAGGTGAAGTTTGTGGATGTGGCGGCGTGCCGCAGGTTCCTGCAGAGCTATGGCTCCGGTGCCGTACAACAGTCCCTCTCCCAGCACACCTGCCGCCTCCTCCACATCCCACAACAGGAGCTTGCCTTGGAAACCCAGCTCAAAGCCGGGACGCACACTTTGGACTTTTGTCTGGACGACCTGGAGCTCTGTCTGCAGCACATCCACCAGTCACAGCCAGAGCGCCTACGGGATGATGAGATTGCTGAGCTGGACCAGCAGCTGCAGAGCCAGGCCTTGGGTCACATTCCCCAGCCACCCACCCTCACACAGGAAGAGCCCCCCGTGCCCAGCAACTGTTTCCTGTTCCAGAAGAGGGTGTTTGAGGACCGCATGCTGGCGGCGGGGGACCTGCAGCGGTTCTCCAACGGCGTTGGGCGGGACTGGAGGAAAGTGGGGCGGGCCTTGGGCAAGAACTGCCGTGCGCTGAAGGGGCCGGCCATAGACAACCTGGCCTACGAGTATGAGAGGGAGGGGCTGTATGAGCAGGCCTATCAGCTGCTGAGCCGCTTCATCCAGGCGGAGGGGAGGGCGGCACGACTGGGCCGGCTGGTCAGAGCACTGGAAGACAGCAAACTCACTAGCCTGGCTGAGAACATTTTGGACATCCAGCCCCGGGATTGACactgtctgtcacactgtctgacggtgtgtgttggtctgtgtgtgtgcatctgtgtctgtgtgaaagAGTGGTAACGTGTGGGTGGCATTGTTTGTGTGAGCGCAAACGTGTGTGCACTAACTTACCTAGGTGCTACCATGTGTCAGTTCTGTGTGAGCTTCGTGTCTGTGAGCTtgattgtatgttttttttattggagTAAAAATGTCTTGTGTTACAAAACCAATAGTTCTCATAATTGCTATGTCACGTCATTGTTGTCTCTGGTTGGAGAGCAAACTAAAATCACTGTGGGCCTTTTCTTCTGCTttaaacccaaccccctttctccACCACAGACTGGACCATTGATGCATTTGATCATTCTACCAATAACCTAGATTGATATTGAACAATTTGCAATGGGATTGTGGAATATTTGTTCCAAATTTCAAATAAAGTGTTGGATTTATAAAAACGAA
>NM_001124639.2
ATTTTAGAAAATGGTGGCACTGAGTGTGGAGGTTGGCCCGTGGACAGGATGTGCGGTTCTCTTCCTGCGCTCCTGTCCCGCAGTgaacctgctctctctctacaAAGACCAGCAGGGCAAGTTCAGCGTCTTCAAAGTCCTCAAGCTGACACTCACAGACTCAGCTGGGGGGCTGGAGGGGTACGAGATCCTAAAGCTGCACGATGCAGATCCTCTGCTGGGTGTGGAGGTGAAGTTTGTGGATGTGGCGGCGTGCCGCAGGTTCCTGCAGAGCTATGGCTCCGGTGCCGTACAACAGTCCCTCTCCCAGCACACCTGCCGCCTCCTCCACATCCCACAACAGGAGCTTGCCTTGGAAACCCAGCTCAAAGCCGGGACGCACACTTTGGACTTTTGTCTGGACGACCTGGAGCTCTGTCTGCAGCACATCCACCAGTCACAGCCAGAGCGCCTACGGGATGATGAGATTGCTGAGCTGGACCAGCAGCTGCAGAGCCAGGCCTTGGGTCACATTCCCCAGCCACCCACCCTCACACAGGAAGAGCCCCCCGTGCCCAGCAACTGTTTCCTGTTCCAGAAGAGGGTGTTTGAGGACCGCATGCTGGCGGCGGGGGACCTGCAGCGGTTCTCCAACGGCGTTGGGCGGGACTGGAGGAAAGTGGGGCGGGCCTTGGGCAAGAACTGCCGTGCGCTGAAGGGGCCGGCCATAGACAACCTGGCCTACGAGTATGAGAGGGAGGGGCTGTATGAGCAGGCCTATCAGCTGCTGAGCCGCTTCATCCAGGCGGAGGGGAGGGCGGCACGACTGGGCCGGCTGGTCAGAGCACTGGAAGACAGCAAACTCACTAGCCTGGCTGAGAACATTTTGGACATCCAGCCCCGGGATTGACactgtctgtcacactgtctgacggtgtgtgttggtctgtgtgtgtgcatctgtgtctgtgtgaaagAGTGGTAACGTGTGGGTGGCATTGTTTGTGTGAGCGCAAACGTGTGTGCACTAACTTACCTAGGTGCTACCATGTGTCAGTTCTGTGTGAGCTTCGTGTCTGTGAGCTtgattgtatgttttttttattggagTAAAAATGTCTTGTGTTACAAAACCAATAGTTCTCATAATTGCTATGTCACGTCATTGTTGTCTCTGGTTGGAGAGCAAACTAAAATCACTGTGGGCCTTTTCTTCTGCTttaaacccaaccccctttctccACCACAGACTGGACCATTGATGCATTTGATCATTCTACCAATAACCTAGATTGATATTGAACAATTTGCAATGGGATTGTGGAATATTTGTT

Function

NR:

description
tumor necrosis factor receptor type 1-associated DEATH domain protein isoform X1

GO:

id name namespace
GO:0043065 positive regulation of apoptotic process biological_process
GO:0043123 positive regulation of I-kappaB kinase/NF-kappaB signaling biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004871 obsolete signal transducer activity molecular_function

KEGG:

id description
K03171 TRADD; tumor necrosis factor receptor type 1-associated DEATH domain protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036979131.1 False 1459 mRNA 0.53 6 68683171 68686771
XM_021604936.2 False 1575 mRNA 0.53 7 68683171 68695705
XM_021604935.2 False 1533 mRNA 0.53 6 68683171 68695735
NM_001124639.2 True 1313 mRNA 0.54 4 68683209 68685535

Neighbor

gene id symbol gene type direction distance location
LOC110526435 LOC106562227 coding downstream 5469 68665174 ~ 68677702 (-)
pigb pigb coding downstream 55787 68623434 ~ 68627384 (-)
LOC110526433 NA coding downstream 73996 68596131 ~ 68609175 (-)
LOC110526422 NA coding downstream 243647 68432656 ~ 68439524 (-)
LOC110526419 tcf12 coding downstream 283197 68298165 ~ 68399974 (-)
LOC110526952 NA coding upstream 2515 68698250 ~ 68707033 (-)
LOC110526442 LOC106587420 coding upstream 11635 68707370 ~ 68713633 (-)
LOC110526441 LOC106562231 coding upstream 18318 68714053 ~ 68720434 (-)
LOC110526437 LOC106587415 coding upstream 28316 68724051 ~ 68729230 (-)
LOC110526438 LOC106562233 coding upstream 34209 68729944 ~ 68743853 (-)
G538698 NA non-coding downstream 957 68681851 ~ 68682214 (-)
G538678 LOC106587425 non-coding downstream 38580 68641673 ~ 68644591 (-)
G538674 NA non-coding downstream 46506 68629984 ~ 68636665 (-)
G538665 NA non-coding downstream 71464 68611489 ~ 68611707 (-)
G538459 NA non-coding downstream 137296 68545593 ~ 68545875 (-)
G538701 NA non-coding upstream 473 68696208 ~ 68696978 (-)
G538712 NA non-coding upstream 8013 68703748 ~ 68703977 (-)
G538713 NA non-coding upstream 8512 68704247 ~ 68704456 (-)
G538714 NA non-coding upstream 9206 68704941 ~ 68705166 (-)
G538715 NA non-coding upstream 9459 68705194 ~ 68705423 (-)
G538460 LOC106587433 other downstream 166490 68510315 ~ 68516681 (-)
G538277 NA other downstream 538264 68142251 ~ 68144907 (-)
G536630 LOC106562092 other downstream 2133197 66549367 ~ 66549974 (-)
LOC110526387 LOC106587187 other downstream 2178146 66499996 ~ 66505055 (-)
LOC110526379 LOC106587193 other downstream 2401552 66277162 ~ 66326558 (-)
LOC110526447 LOC106587408 other upstream 111678 68807413 ~ 68816777 (-)
LOC110526455 LOC106587401 other upstream 253785 68949510 ~ 68953699 (-)
G539306 NA other upstream 307008 69002743 ~ 69005665 (-)
LOC110526462 NA other upstream 577383 69272988 ~ 69289496 (-)
G539674 LOC106587381 other upstream 920019 69615754 ~ 69616671 (-)

Expression


Co-expression Network