LOC110526443 (LOC106587413)


Basic Information

Item Value
gene id LOC110526443
gene name LOC106587413
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68761554 ~ 68767262 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980833.1
AATTTATTTCGCTAGCTAGCGATAGGAGACAGATGGCAGCTGTCTAAACTTGTTTTGCTAATAACACCGTTGAGATAGCTAGCGTGAGCATGTAGCTAGGTTTAGCGTGAGCATGTAGCTAGGTTTAGCGTGAGCATGTAGCTAGGTTTAGCGTGAGCATGTAGCTAGGTTTAGCGTGAGCATTTAGCTTGGttttctatgtatatttgtatggTAAAGAATGTCACCCACCTTGTGTTTTTCGGCAAGATCAGACCAAACAAAGTCAAAGAGGAAAGGATGCTTTTCCACTTCTGTCCCCAGTGTGGCACCAAACTACAGCCTGGATTCCGGTTCTGCCCCTCCTGTGGGGACAAGTTGCAGTGTGTTGTGGACCCCTCTGGACCTGTGGAGGCTGCTTCCTCTGGAGTCTCTCTGCTTCATGTCACTGATGGTGTAACCAAGACTGCTAATGCAAGCAGTCCTACTCCAAGCACAGGACAACTGACTGGCTGGGACACAGAAGGTCTTGTCTGTGCCACCCCCAGTCCAGTGTCGACCCGTCCCCCACTGCGTAGGACCCGTAACTCAGTCCCCGCGGCCCGGAACGATGAAACTCCTAGTAGTATAGCCAGTCCTCCTGTCACTGCCTCCCCGAAACGTACTACAGATCAAAGCCACAAATCTGTGATGTCTCCACGAAAACGACGTGCTGTCACCCCAAAAGTGGAGCAGATAAAAAAGGAACCGTCTGTGGAGCTGGCCTCCTCACCTGGCTCTTCACCTCTCCCCAGGTCCCCCTCCACAGtcaagGGGAAGGCGAAGAAGGCCAAGCGAGCATGTGCTGTGGAGCCACTGCAGGAAGGGGAGGAGCTTTGTGACACAACTGGCAGGAAATGGAGGCTTGTGAAACTGTTGAGTCAAAGCGATGCAGAGATGTTCTatggagTCCTGCAGAATGGGCCAGGTGCCAATTCCAGTGACTGCAAGCACATCCTCAAACTAGGGGCTAAGGACGGGAagatgtttaatgagctgaaCTTCCTCCAGAGAGCTGCCAAGCCCTCATCTGTGGACAAGTGGATAAAGCACGCCAAAATGGACTTCCTTGGGATTCCTACCTGTGTAGGATTTGGTCTCCATGCAGACtcttacagGTTTTTGATTTTCTCCAGCATGGGCCAAACTCTTCAGTCTTTCATGGATGAGGGGGAGGGGCTCCTGTCTGAGAAAGTGGTCCTTCAGCTGGCCTGCAGAGTAttGGATGTGTTGGAGTTCATCCATGAAAATGAGTATGTTCACGCAGATATCCATGCTGAAAACATCTACATCAGCCCAGCACAACAAATACAGgTATACCTTGCAGGGTACTGCCATGCTTTCCGGTACTCTCCTGGTGGCCGGCATGTGGAGTACCGTGAGGGCAGCCGAACACCACATGAAGGAGCCATAGATTTTATAAGCCTGGAGTCTCACAAGGGAGCAGGTCCGTCTCGCCGTAGTGACCTGCAGGCTTTGGGCTACTGCATGCTGCGCTGGTACACAGGGGCACTTCCCTGgacctccctcacacacacaccagcccgcgttgccatggagaaggagagATACATGGAGGACGTTCCAGGTCTCCTGAGTCACTGCTTCGGACAGAAGAAAGTCTCGAGTGCGCTGCAGGTGTACCTGTCTCAGGTGATGGCTCTGCAGTACTCTGACCAGCCGGACTACAGGGCTCTGAGGGCAGGCCTTAGTGCAGCTCTGCAGAAGCTGGGAGGGTCACTGGAGCAACCCCTTGACCTGCAGATGAAAGCGATCGGAGGAAGATGATCCTTCGGGATGAAAATTCACTAATGAGATTTTTAGCCAACTGTTTTTAAAATGCTGACTTTGTGACTCTGTATGTGGTGTGAGTCCTGCTGTCTTTTTATTATGTTGGAGTACACTCAAGGAGGAGCGTGGGAAGGTGCGTTTCATTAAGTTCACTGGAGGTGCAGTGCACAGAAACTCCTGGTTATGCCAGGTTAGTGAGCACTGCTGTAATGTGTTATTGTCAGCAGTGGTTGGCGCTGTGTCAGTGAATGTGTAGTTAATGTTTAAGCTATGAAATAACAGTTTATAACAAAGAACCTTTGGTCAGGGTGGTAATGTAAGTACAATAATGTGCACTGTTCCAGTTAGGTGTTGCAGATGTTCATGATATGCGTTTtactttttgtattgttttgaTCACAGGATAATACTTTATTAAAGAGCTTTTATTAATTCAACTGTT
>XM_021607434.2
cacaccTGCTTCCGGTCTCCACCACTTTTCTTTTGTCAACTGGCTCACACATTATCTCTCTCCCTGGATCTCCAGCTCTGCAATGTGCTAGAAATAAGAAACCGGTGGATGTATCTTTATTGACAAATTTAGGTCCCCGTGATTGCAAAGAGCAAGGATGCTTTTCCACTTCTGTCCCCAGTGTGGCACCAAACTACAGCCTGGATTCCGGTTCTGCCCCTCCTGTGGGGACAAGTTGCAGTGTGTTGTGGACCCCTCTGGACCTGTGGAGGCTGCTTCCTCTGGAGTCTCTCTGCTTCATGTCACTGATGGTGTAACCAAGACTGCTAATGCAAGCAGTCCTACTCCAAGCACAGGACAACTGACTGGCTGGGACACAGAAGGTCTTGTCTGTGCCACCCCCAGTCCAGTGTCGACCCGTCCCCCACTGCGTAGGACCCGTAACTCAGTCCCCGCGGCCCGGAACGATGAAACTCCTAGTAGTATAGCCAGTCCTCCTGTCACTGCCTCCCCGAAACGTACTACAGATCAAAGCCACAAATCTGTGATGTCTCCACGAAAACGACGTGCTGTCACCCCAAAAGTGGAGCAGATAAAAAAGGAACCGTCTGTGGAGCTGGCCTCCTCACCTGGCTCTTCACCTCTCCCCAGGTCCCCCTCCACAGtcaagGGGAAGGCGAAGAAGGCCAAGCGAGCATGTGCTGTGGAGCCACTGCAGGAAGGGGAGGAGCTTTGTGACACAACTGGCAGGAAATGGAGGCTTGTGAAACTGTTGAGTCAAAGCGATGCAGAGATGTTCTatggagTCCTGCAGAATGGGCCAGGTGCCAATTCCAGTGACTGCAAGCACATCCTCAAACTAGGGGCTAAGGACGGGAagatgtttaatgagctgaaCTTCCTCCAGAGAGCTGCCAAGCCCTCATCTGTGGACAAGTGGATAAAGCACGCCAAAATGGACTTCCTTGGGATTCCTACCTGTGTAGGATTTGGTCTCCATGCAGACtcttacagGTTTTTGATTTTCTCCAGCATGGGCCAAACTCTTCAGTCTTTCATGGATGAGGGGGAGGGGCTCCTGTCTGAGAAAGTGGTCCTTCAGCTGGCCTGCAGAGTAttGGATGTGTTGGAGTTCATCCATGAAAATGAGTATGTTCACGCAGATATCCATGCTGAAAACATCTACATCAGCCCAGCACAACAAATACAGgTATACCTTGCAGGGTACTGCCATGCTTTCCGGTACTCTCCTGGTGGCCGGCATGTGGAGTACCGTGAGGGCAGCCGAACACCACATGAAGGAGCCATAGATTTTATAAGCCTGGAGTCTCACAAGGGAGCAGGTCCGTCTCGCCGTAGTGACCTGCAGGCTTTGGGCTACTGCATGCTGCGCTGGTACACAGGGGCACTTCCCTGgacctccctcacacacacaccagcccgcgttgccatggagaaggagagATACATGGAGGACGTTCCAGGTCTCCTGAGTCACTGCTTCGGACAGAAGAAAGTCTCGAGTGCGCTGCAGGTGTACCTGTCTCAGGTGATGGCTCTGCAGTACTCTGACCAGCCGGACTACAGGGCTCTGAGGGCAGGCCTTAGTGCAGCTCTGCAGAAGCTGGGAGGGTCACTGGAGCAACCCCTTGACCTGCAGATGAAAGCGATCGGAGGAAGATGATCCTTCGGGATGAAAATTCACTAATGAGATTTTTAGCCAACTGTTTTTAAAATGCTGACTTTGTGACTCTGTATGTGGTGTGAGTCCTGCTGTCTTTTTATTATGTTGGAGTACACTCAAGGAGGAGCGTGGGAAGGTGCGTTTCATTAAGTTCACTGGAGGTGCAGTGCACAGAAACTCCTGGTTATGCCAGGTTAGTGAGCACTGCTGTAATGTGTTATTGTCAGCAGTGGTTGGCGCTGTGTCAGTGAATGTGTAGTTAATGTTTAAGCTATGAAATAACAGTTTATAACAAAGAACCTTTGGTCAGGGTGGTAATGTAAGTACAATAATGTGCACTGTTCCAGTTAGGTGTTGCAGATGTTCATGATATGCGTTTtactttttgtattgttttgaTCACAGGATAATACTTTATTAAAGAGCTTTTATTAATTCAA

Function

NR:

description
inactive serine/threonine-protein kinase VRK3-like

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0005524 ATP binding molecular_function
GO:0004672 protein kinase activity molecular_function

KEGG:

id description
K08816 VRK; vaccinia related kinase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980833.1 False 2251 mRNA 0.50 15 68761554 68767075
XM_021607434.2 True 2124 mRNA 0.50 15 68761559 68767262

Neighbor

gene id symbol gene type direction distance location
LOC110526439 LOC106587418 coding downstream 1628 68744664 ~ 68759926 (-)
LOC110526438 LOC106562233 coding downstream 17701 68729944 ~ 68743853 (-)
LOC110526437 LOC106587415 coding downstream 32324 68724051 ~ 68729230 (-)
LOC110526441 LOC106562231 coding downstream 41120 68714053 ~ 68720434 (-)
LOC110526442 LOC106587420 coding downstream 47921 68707370 ~ 68713633 (-)
LOC110526445 LOC106587410 coding upstream 14978 68782240 ~ 68785883 (-)
LOC110526446 LOC106587411 coding upstream 19471 68786733 ~ 68792694 (-)
LOC110526447 LOC106587408 coding upstream 43061 68807413 ~ 68816777 (-)
LOC110526450 dnaaf1 coding upstream 60315 68827577 ~ 68829756 (-)
LOC110526455 LOC106587401 coding upstream 182248 68949510 ~ 68953699 (-)
G538715 NA non-coding downstream 56131 68705194 ~ 68705423 (-)
G538714 NA non-coding downstream 56388 68704941 ~ 68705166 (-)
G538713 NA non-coding downstream 57098 68704247 ~ 68704456 (-)
G538712 NA non-coding downstream 57577 68703748 ~ 68703977 (-)
G538701 NA non-coding downstream 64576 68696208 ~ 68696978 (-)
G538798 NA non-coding upstream 91105 68858367 ~ 68858791 (-)
G538800 NA non-coding upstream 91970 68859232 ~ 68859489 (-)
G538848 NA non-coding upstream 127726 68894988 ~ 68898434 (-)
G539287 NA non-coding upstream 143332 68910594 ~ 68910827 (-)
G539317 NA non-coding upstream 188951 68956213 ~ 68960962 (-)
G538460 LOC106587433 other downstream 244873 68510315 ~ 68516681 (-)
G538277 NA other downstream 616647 68142251 ~ 68144907 (-)
G536630 LOC106562092 other downstream 2211580 66549367 ~ 66549974 (-)
LOC110526387 LOC106587187 other downstream 2256529 66499996 ~ 66505055 (-)
LOC110526379 LOC106587193 other downstream 2479935 66277162 ~ 66326558 (-)
G539306 NA other upstream 235481 69002743 ~ 69005665 (-)
LOC110526462 NA other upstream 505856 69272988 ~ 69289496 (-)
G539674 LOC106587381 other upstream 848492 69615754 ~ 69616671 (-)

Expression


Co-expression Network