LOC110526448 (tha11)


Basic Information

Item Value
gene id LOC110526448
gene name tha11
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68816939 ~ 68818769 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607440.2
TCTAAATCTATATTAATTGTGCACAACTCTAAACAAAATGTCATCTTTTTGGGGCTGCCTGCTTAGGACACAAAACAGGAAGTTGTAAGCATTGTGGGACGTGTAGTTCCGCTTCGAGGCCGATGGGCTTGATAATAACGCGAGGAAGAACGAAACAAAAATAAATTAGATAAAACTTCAATAGAATAACAAGTTTATCAGATTTTCATTGGAATAAATATGCCTGGATTCACCTGCTGTGTCCCTGGCTGCTACAACAACTCTCATCGGGACAGAGAGCTGCGGTTCTACACATTTCCAAAGGATACCACGCAAAGGGAAATTTGGCTCAAGAACATCTCCCGGGCCGGGGTGAGCGGCTGTTTTAGTACCTTCCAACCCACTACTGGACACCGCGTCTGTAGCGTACACTTTCCCGGTGGCAGAAAGACCTATACAGTTCGAGTACCGACGCTCTTCCCGCTGAGAGGAGTGAATGAACGCAAGAATCGAAGGGGCAGGAACAGGAAAGCGTCTGCGGCGGCTCCTGTTACAGCCCCCAGTCCAGGTAGTATTGTCATCACAAACGTTGTTTCGACAGCCCCAGGTGCCGCTGAGACCGCTCAGAGCGATGCAGTCACCGACACAGCTGCTACTGATGGCCCTTTCGTGGTGCAGATCGGCCCAGACGGCGAATACCTCGGACCTGTAAATCCAGCCGCGCAGGGTGACGGGTCCTGTTTTACTGCAGTCGTCTCCAGCTCCACTGACCTGGCTGGGGGCGACGATCCCCCTGCTGACGCCGCGGCCGCTGCCCAGCAGCAGACTGTGCAGTACTACAGCGTTGTCAGCAACCCGCTGGACCACGCGTACTCGCTGACCACCGGGACCACCTCGGCCGAACTACTTCGGAAGCTGAACGAGCAGCGGGACATCATCGCACTCATGGAAGTGAAGATGAAGGAGATGAAGGCAACCATCCGCCAGCTGCGCGTAAACGAGGCCAAGCTACAGGAGGAGGTGCGAGAGCGGGACCGTTTGCTCTCCGCAGGAGCAGCGGTAAAGAAAATGTGACCATCATTCCCACCCAAAGGATGGATAGCTAAAGACCGTCGCGACCTAAGACTTTAACGTGAGATGAAGGGGGTCCTTCATGGAGAGCAGAGCAAACCCTCTTTTTTTACGAAAGCGATGACAATTTATTTTCAATAGAAGAGATAGCAAATTTTTGGTCTACTCATGCTATTTTTTTGGCTAGCTAGTTGATAGTAATAATCCCATAGTTGCCTATAAAACATTGCCCAATTTAGTCCACCCGTGTGTTTGCTAAGTGCAAGCAGCCTTTTAGGGCAGTGTAAAAACATTGGCCAATGCATTCTTGTGGATTGCATGGCTGCAACTCTGTAGCCTACTTTTTGGGGGAATTATTAGGCCATTTTTTCTGGTTGTTGAGCTGTTTGTATGTCAGTATCTGCAGTTGAATTCTCATTGCAGTATATTAAACACCAGCTTTTCAGCTCAGAGGCCATCCTCCATACAAGGTTGCTTTGTGACTCTAGCTGTGGGAAGATGTGTTGGGTATTATAAAAGTATGTGTGCTTATGAGGTGCCTATTTCCACGAGACCTGTCTTGATCCATGGCTCTCTGGTTGCAAGGCTTTTACACCACCTAAAGGTtcactgtgactgtgtgtctcaACCTTCTCCCAAATAGTTTGATACAGTATCTGTAGTTGCCACTCACATATGGATATTATGTTAACCTCTGACTGTTGAACTTTGACCTGACAGCAATGACTGTTCTGAAACTTAAACCATAACCATTTGAAGTAAATTTAATTTTGAAATAATA

Function

NR:

description
THAP domain-containing protein 11-like

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
K23211 THAP11; THAP domain-containing protein 11

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607440.2 True 1831 mRNA 0.48 1 68816939 68818769

Neighbor

gene id symbol gene type direction distance location
LOC110526444 LOC106587414 coding upstream 36622 68775474 ~ 68780317 (+)
LOC110526436 LOC107688027 coding upstream 135264 68679317 ~ 68681675 (+)
LOC110526434 cog4 coding upstream 152547 68644828 ~ 68664392 (+)
LOC110526432 LOC106587425 coding upstream 172348 68640790 ~ 68644591 (+)
LOC110526430 LOC106587426 coding upstream 176326 68627574 ~ 68640613 (+)
LOC110526954 cmtr2 coding downstream 29902 68848671 ~ 68856233 (+)
LOC110526451 LOC106587405 coding downstream 62821 68881590 ~ 68899511 (+)
LOC110526452 LOC106587404 coding downstream 104069 68922838 ~ 68936761 (+)
LOC110526454 LOC106587403 coding downstream 119873 68938642 ~ 68946874 (+)
LOC118965123 NA coding downstream 136496 68955265 ~ 68955385 (+)
G538565 LOC106587420 non-coding upstream 107311 68707409 ~ 68709628 (+)
G538564 NA non-coding upstream 109639 68706919 ~ 68707300 (+)
G538563 NA non-coding upstream 111516 68705188 ~ 68705423 (+)
G538562 NA non-coding upstream 111836 68704765 ~ 68705103 (+)
G538559 NA non-coding upstream 113973 68702625 ~ 68702966 (+)
G538785 NA non-coding downstream 26789 68845558 ~ 68845766 (+)
G538788 NA non-coding downstream 29271 68848040 ~ 68848328 (+)
G538799 NA non-coding downstream 40522 68859291 ~ 68859533 (+)
G538851 NA non-coding downstream 82026 68900795 ~ 68901024 (+)
G538852 NA non-coding downstream 83612 68902381 ~ 68903425 (+)
G538607 NA other upstream 5049 68811119 ~ 68811890 (+)
G538561 NA other upstream 112243 68704398 ~ 68704696 (+)
G537617 atxn1l other upstream 1049326 67766756 ~ 67767613 (+)
G537606 NA other upstream 1060321 67754556 ~ 67756618 (+)
G538859 NA other downstream 87276 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 177314 68996083 ~ 69002828 (+)
LOC110526955 LOC106587395 other downstream 192837 69007055 ~ 69018414 (+)
G539068 NA other downstream 542872 69361641 ~ 69367642 (+)
G539959 NA other downstream 1197573 70015270 ~ 70019477 (+)

Expression


Co-expression Network