LOC110526954 (cmtr2)


Basic Information

Item Value
gene id LOC110526954
gene name cmtr2
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68848671 ~ 68856233 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>LOC110526954
ATGGTTGCAATCCGCCAATACACATTTAAAGAAGAAGAACAAAGTTAGACTATTCAAGCAGTTAACTGATTATGTGTCAGTGTATGTGGGCCGAGTTGATGGCCTTGATTATAGGTTTGAAATGAGTGGAGGAGGTGAAACATTCAGAATGGTGATCTGCTCTGATTTGGCTGCAGTGTTGAGTAGTGTGAAGTGGTCAGATAGGGGAGACTTGCTTGAGGAGATGATGTTGCTGTTAATGGGATTGGAGAGGATGGGAGTGATGGTAAGCTTTTGCTGGGTTTTCACCCATGTGCGTGTGGAGAGTAATGAGAAGGCTGATGTGTTGGCTAAGAGTGCTGTGAGGCGAGAGGGGGTATATATTCAGGTCCTGCTGGGCCGCAGGGAATTCAAGTCCTCGATCAAAAGGGCTCAATTTTTGGCAAAGGAAGTGGGGTGCTAGTAGTAAGGGGAGCCAATTTTATCACGTAAAGGAAGAAGTAGGGAGTATGGGATGTAGGTTAGAGGAAGTTCTGTGGAGTAGACTACGGTTTGGGCATACAGGTTTGAATGCCACATTGTGATAAGGAGACATGAAACAGGTCTGTGTGATGACTGTTTGGTGGAGGAAACGGTGGAGCATGTGTTGATATTTTGGGAATTATATATCGTAGATAGGGAGAGATTGTGTGAAAGGGTTAGAGAGGCTGGACAAGTTTGGGTGGTGTAGTTTAGGGCTCTTTCACTTTCTTAGAGGAACAGGACTAAGGAACAATTTTGTGTAGTTAGGCTGTGCCTGGCCTCAccctccagtacagtaggtggagGTGTATGCACCTTAAAAGTCAGATGTAATCCACCAACCCAATCCCTAAGAAGAAGAATCTTAAGTCAATTAAAGGTAACCTGCAGTGGACTTGTGAATTTTGTTTGTGTTACGTATGACCAGAGTGAGAAGGTGCTTCGTGTCACGAAACTTGGGTCAAGATCTGTTTCTTGCTTTACTCTTAGGAATAGGgcaccattgaaaggagtgatttaTGTGGTAGTGTTAAGTGTGGAGGTGTAGCAATTGAAGTTGAACattcctggtgtttgtgatgCCTGCCGTTTGGTGCCACGCACACCCATTGGGGAGCATGGTGAAACAGTGGAGTCATTGTCAGTCTCTACCAGACAAAGTGATTTTAGGATATATCAGTTATCCTTTTAGAGATTTTGTGCAGAATCTACTGCGCTGTAATCAGGAGCAACGTTTATGGTCATGTTGCcccagtgtgtaggagggagattcatGTGACTGAGGATTGAAGATTTGGTGGATGAAGTTGTTTGTCAATTGTAGGGGTGCTCATGTTGCTGGGGATCGGGAATCTCTGGTgctagagaggcaggttgaggtggccagagtcagagtagtgcagaGGGTGTCATATGATGAGGCAGTGAATAAAGTGGAGGAGGATGGGTCAAgggtgagggatcctgagaggatcccAGTGAGTAGTAGATTTGTGCCAATACAGACAGATAGGCCAATCAGTGAGATGCTTCAGTAAGGTTAGCTTCTTAGCATTCATAGTAATGGTTATCAACTCTACTGCAGAAATGGGTGTCCAGTGGAGAGGATGAGTTGGGGAGCGAGGAGGAAAGCTGTCAGACAGCAGCCCACCGATGTGGAAGCCTTTGACCCGGAAGTGGTTGCGGAGGTCAGAGAACTCTTCAACAAAGTCAGGACATATGTCAAACCGGCAACTGGGGAGTGGTGTATCCCTTACCCCAGCGAAGCACTGAGACACCCGGCCCAGGACCACATCCTCCTGCAGACCCTGAAGACGTCACTAAATGAGGTGAAGAACCGACTTAGCGATAAGGATCTGGAAGTCTGGCACCAACATACCAATTCCACCAACCATGCCGGGAAGGTCATTGGTACTGTGCGAACCTCTGCCAATGCCGAGATCTGCACTCAGGCCTGGTGCACGTTCTATGAGATCCTGGGCACCTTCAACCTTCTGCCATAGGAGGAGTTGCAAAGCGGGGAGCTGAACACTGTTCACCTGTGTGAGGCTCCAGGGTCTTTCATTGCCGCTCTGAACCACTACCTCAAAACTAGCGAGCACACACGCTACtgggactggagttgggcagCCAACACACTCAACCCCTATCACGAGGCCAACGGAGGGggcaccaccaccacacctcatTGCCAACACGCTGCCCTGGTGGTTCTTTGGCTCGGACAACACAAGCGTCATCATTAGCCAGAGGCAACTGCTGGAGCTGCAGGGCTTTGTTGGTAACATGCTCAGTATTGATGTGGTGACGGCGGACGGGAGCTTTGACTGCCAGGGGAACCCAGATGAGCAGGAGGCCTTGGTGGCGTCGTTGCACTACTGCGAGGCTGCGGCCGCACTCTTCCTTCTGGGCCCAGGAGGCTCGTTTGTACTAAAGATGTTCACTCTGTACGAGCACTCCTCCCTCTGCCTGCTCTACCTGTTAAACTGCTGCTTCCGCTCCGTCAGCGTCTTCAAACCGGCCACCAGCAAAGCAGGGAACTCTGAGGTGTATGTCGTCTGTCTTCACTACGATGGTAGGAAGGCTGTGAGGCCCCTGCTGTCCAAGCTGATCCGTCACTTCTGGCCGGACCTGTCTGCCCGTGAAGCCCTATTCCCCAGCCAGCTCCTCCCGCAGTCGTTCCTGGCGCAACATGAGCAGGCGTGCTCCTACTTCCATGCCCTACAGACAGGGACGATTGGGGAAAACCTGAAATAGTTTGAGGGCCTCAATGAGAAGCAGAGGCAACGACTGGAAAACATCAGGGACTGCACTGCTCACGAGTACCTGCAGCGCTTCCAGGTGAGTTCTCTGCCGCAGGACCGCTGGTTGTCTCGTAACAGTGGCCCCAGCGTGTTGCAGCGTTACGGGTCGGATGCCCCTGGGCCAGAAGAGAGAGCTGCAGGCCCTGGGCTGGAAGGAGCGTGTTGGGAAGGGCCGCAATGCTGCCTGGGTGGAAGGGCACAGGGGGCATGCTGTGTGCTGGCAGGGCCGCTGGCAGAATGTCATATGGACACCTGGTTTGTGATAGTGGGGGCGACCCTCCCTGTAGTCAGGAACTCACCATTCTGTGATGGGGGTTTGTTGAACCACCTCAATGAAGCATTGGAGCAGGCATGCCCTGCCTGGACTCTGGTCCCTCCCTGTAGCTCCTGCCCAATGGTTTGTACCACCTCCATCCTCTCTGAGGTGGCAGCCCTATGTGACATCACTCCCTGCAATGGCAAGGGAAACAGAAAGTGCCTAGTTTTTGGCAGAGCATCGTGTTGGGGGGATTGTGAAGAGCAGGCTGGGGGGTTGGCGCTGGAGTTTCGTTCGGAGCCCTCGTTACCACCTACGGCCCGCACCACTCTGCATGACGGGGAGCCACAATATCAGAGACCTGCTGGGCTGCGTCGTGCTCTCCCTGCACCGCATGGGACCCGGCGacgccctcctccttcccctctccaccTTTACCTGCGTAACCGCTGCAACCGTCCATTGCCTCCACCTGTCCTTCCGCTCCATCACCTTAAAGTGTCCTTCTCCTCCAGGTGCTGCGGTGCTGTTATGTGTGGGGTTCTGTCGAGCTGCCGCTCGACAAATTCCCCACCTCGGTGACGTGCAGGAGCGTATGAGCTGCCTGGCCATTGGGGAGGAGGACACTGACATTCTGCCTCCTGTTGGTCAGAGACAGGTACTGCAGTTTGTTCCCATGGAGCTTCTCAAAGGAGAGCTGACAGAGTTCCTGTGGACCATGAACTCAGCCATCGTCCATCAACGGCTGCACCTGCTTATGAAGGCTTAGCTGGGGTCAACAGAGGGGGCTCTGGGTGTCTCGAGTGGATTGTACCATAGCCTGGCCTGAAAACAAGCACTGACTAGCTAATTTCTCTAGCCCCTACCCCATCAGTGTTGACAGATGTGAAGGAAGTGGATGGGTGGAAGCCCCCCATAAACTTAATCCCATCTGGTCCCTTCAGATCTGTATCACAGAagtgggattgggttgtttttgGACATTGCAACTTTCATTATTTAATAAGGGCACATTTGGTCCCTGTTTGGATGAAAATTAGAGGCAAGCAATGCGGTGAAGTACATTTATTTGATATCTTTTGATTGGTGctgtgattattttttttaaatgattgtcAACAGTTATTCTGTTCAAATTAGGACAACATTTGGTCACATTTCCCTGGGTCCCTGATCTAATGTATTTTTAGGACAGCACAACTCATGTACTGCTGATTCAAGTtatttgaaataaaaaatatatttcatattagTTTCActatttaaataaaaacattatcaTGCAGTTTGTTAGGAGTTAAAATGCCTTTTTTGTGTAATTTTCCTGACACTGTCTAACCAGAAGTGACTAAATACAGTAGATTGTGTAACTGTGTTTTTACCTGGGGACTGCTGTGAAGGTTAGCCGTGCATACGCTGTTTCACTCTGCAGGGgtttgaagaaaatgtagtcttgCCTCTACGGCATCTATACTTAGACCCCATTTACACCTGGTGTTAAACTAAAAATGAATACCTGATTATGTAGGATCTGATAATGTCTGCGGCACAGCTGGCCTTGAAATGTCTCATACCAGTCTAACCTGCATTTCTAGGTTTTCTTTGGAATGATGCATCCAGTAGAACAGCTAGCCTATGTGGTCAGATACTTTATTGAAGAAAATGGTTGGACCAAAATGTTGTGCTTTGGGTTTTGGGAACATGTTGTGCAAGTCGATGTGTCcacaaaatgtgtttttatacATACTTTTGTATTGGTTTTGTACATGTTTTGTTAGCCTTTGAAAAAAACGATTACATTTTTTTAGATTTATGTTCTTTTGAATATTTCAAGTGATTATATTTTTTTGGTGCATGTGGTATTTCCTCAAATATTGACTTCAATGGATTCTTGCCTCGTTTTGCCTTACTTTAGTCATCTTTAGTGAACAGAAACGGAGTAGAGtctaattatttattttcaaGCTATTCATAACAAAGAGCCTGGAACAGCCATTTGTGAATACCAAGAAAAGTCTTCATTAGCAGAAGCTGTCAGGACAATCCTGGTGTCTACATTGGGAAGAGGGTTTTCAAAGGTTTACCAAAGCGAGTGTGAACTCCCAGGGGTGCTCTGTAATGAACACAAGCTGCTGAAATCAGGGTAAAGAAAGATACTGGGAGATGATTCTTCTTTCTCTTTGTTTTGCTCTGAATTTGTTTTTATAAAAACATCCAAAAGCACAATAAAGCAAACGTCTGAGCTACA

Function

symbol description
cmtr2 Predicted to enable mRNA (nucleoside-2'-O-)-methyltransferase activity. Predicted to be involved in 7-methylguanosine mRNA capping; cap1 mRNA methylation; and cap2 mRNA methylation. Predicted to act upstream of or within mRNA processing and methylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human CMTR2 (cap methyltransferase 2).

NR:

description
cap-specific mRNA (nucleoside-2'-O-)-methyltransferase 2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
LOC110526954 True 5308 mRNA 0.48 3 68848671 68856233

Neighbor

gene id symbol gene type direction distance location
LOC110526448 tha11 coding upstream 29902 68816939 ~ 68818769 (+)
LOC110526444 LOC106587414 coding upstream 68354 68775474 ~ 68780317 (+)
LOC110526436 LOC107688027 coding upstream 166996 68679317 ~ 68681675 (+)
LOC110526434 cog4 coding upstream 184279 68644828 ~ 68664392 (+)
LOC110526432 LOC106587425 coding upstream 204080 68640790 ~ 68644591 (+)
LOC110526451 LOC106587405 coding downstream 25357 68881590 ~ 68899511 (+)
LOC110526452 LOC106587404 coding downstream 66605 68922838 ~ 68936761 (+)
LOC110526454 LOC106587403 coding downstream 82409 68938642 ~ 68946874 (+)
LOC118965123 NA coding downstream 99032 68955265 ~ 68955385 (+)
LOC110526457 LOC106587399 coding downstream 108822 68965055 ~ 68977010 (+)
G538788 NA non-coding upstream 343 68848040 ~ 68848328 (+)
G538785 NA non-coding upstream 2905 68845558 ~ 68845766 (+)
G538565 LOC106587420 non-coding upstream 139043 68707409 ~ 68709628 (+)
G538564 NA non-coding upstream 141371 68706919 ~ 68707300 (+)
G538563 NA non-coding upstream 143248 68705188 ~ 68705423 (+)
G538799 NA non-coding downstream 3058 68859291 ~ 68859533 (+)
G538851 NA non-coding downstream 44562 68900795 ~ 68901024 (+)
G538852 NA non-coding downstream 46148 68902381 ~ 68903425 (+)
G538856 NA non-coding downstream 48310 68904543 ~ 68904854 (+)
G538857 NA non-coding downstream 48923 68905156 ~ 68905406 (+)
G538607 NA other upstream 36781 68811119 ~ 68811890 (+)
G538561 NA other upstream 143975 68704398 ~ 68704696 (+)
G537617 atxn1l other upstream 1081058 67766756 ~ 67767613 (+)
G537606 NA other upstream 1092053 67754556 ~ 67756618 (+)
G538859 NA other downstream 49812 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 139850 68996083 ~ 69002828 (+)
LOC110526955 LOC106587395 other downstream 155373 69007055 ~ 69018414 (+)
G539068 NA other downstream 505408 69361641 ~ 69367642 (+)
G539959 NA other downstream 1160109 70015270 ~ 70019477 (+)

Expression


Co-expression Network