LOC110526451 (LOC106587405)


Basic Information

Item Value
gene id LOC110526451
gene name LOC106587405
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68881590 ~ 68899511 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607442.2
TGCTGACAGTTTAGAGAGGCTTTAGATCCGACTGGGACAAAATTAACTCGGGATTTCCACGTGCTCCAGGAAGAAGGGAAAAATCAGTAGCGACTGAACGATGGCGACTCAAGCACAGCAGCCACCTCATCTACACCTGGCAGAGCTCACTGCAACGCAGTTTCTTGACATCTGGAAACATTTCGATGCAGACGGAAATGGCTACATCGAGGGAAAGGAGCTGGAGAACTTCTTCCGGCAGCTAGAGACTGCGCGGAGAGGAACAGGCGTGGATCCCACACATGCTGCGTTTAGAGAGAAAATGAAGGAGTTTATGATGAAATTTGACAAGAATGCAGACGGAAGAATCGAGATGTCAGAAtTAGCTCAGATTCTGCCCACAGAGGAGAATTTCCTGCTTTGTTTCAGAACATTTGTGGGATCCAGTGCAGAATTCATGGCGGCATGGAGAAGGTATGACACTGATCGCAGTGGATACATCGAAGCCAATGAACTGAAGGGTTTCCTGTCAGATCTTCTGAAGAAGGCCAACAGACACTACGATGACAAGAAACTCAACGAGTACACACAGACAATCCTGAGGATGTTTGATCTGAATGGTGATGGGAAACTGGGCCTGTCTGAAATGGCcagGCTGCTGCCAGTTCAGGAAAATTTCTTGCTCAAGTTTGAGGGATGCAAGCTTTCAGCAGAGCAGTTTAATGTAATCTTCACCTTCTATGACAAGGATGGAAACGGTTACATCGATGAGCAGGAGCTGGATGCACTGCTGAAGGACCTCCATGACAAGAACAAAATAGAGTTGGACTCGACCGGTCTGGTGGGCTATAAGAAGAGCATCATGGCTCTGTCCGACGCGGGGAAGCTCTACCGCACCGAGCTGGAGATCGTCCTCTGCCGCGACTCCACACTGTGATCTTTCACCTATGACCCCTGACAACCCCCCACTGTCCCCCTCCTGGCATAACCAGGTGCATGTATgaccccctcctccactccaatATCTGTAGAGTGGAAGTGAATGTCCACTTGAAGGCATAAGCAAGACCCTCAGCCCACCTGCCCGACTCTGTTTAACTACCTGTCCATTACTTTGCCCCACCccacctcccctccaccccttATCGCAGCGTGGCGCTACCTGATGATGTCATCAGCGTTTGCAGcttttttgttcttttttttttacatgcaatTCTATAGTGAGTTAACCATTACGTATGGAAATAATAGAAGGAATATATGATATGACTATTTATTTGAATGCATATACATTTTGCCTGAATGTCCTTTATACTGTACTCCCTTAGCCTACTCTTTGTTTTTTCACAGTTCGcctgtaaatctctctctctctgtttctatttaCCTCCAATCTCAATGCTATTCGTTTCAGTATGTTGCCTTGTTTTTGAATTGGGTTTAGGCTCATACTGTTTTAATTGAGAAATTATTGAGAGCATCAGTAAATATAGTTGATGAT

Function

NR:

description
calretinin-like isoform X1

GO:

id name namespace
GO:0005509 calcium ion binding molecular_function

KEGG:

id description
K23908 CALB2; calretinin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607442.2 True 1483 mRNA 0.46 11 68881590 68899511

Neighbor

gene id symbol gene type direction distance location
LOC110526954 cmtr2 coding upstream 25357 68848671 ~ 68856233 (+)
LOC110526448 tha11 coding upstream 62821 68816939 ~ 68818769 (+)
LOC110526444 LOC106587414 coding upstream 101273 68775474 ~ 68780317 (+)
LOC110526436 LOC107688027 coding upstream 199915 68679317 ~ 68681675 (+)
LOC110526434 cog4 coding upstream 217198 68644828 ~ 68664392 (+)
LOC110526452 LOC106587404 coding downstream 23327 68922838 ~ 68936761 (+)
LOC110526454 LOC106587403 coding downstream 39131 68938642 ~ 68946874 (+)
LOC118965123 NA coding downstream 55754 68955265 ~ 68955385 (+)
LOC110526457 LOC106587399 coding downstream 65544 68965055 ~ 68977010 (+)
LOC110526456 LOC106587398 coding downstream 79386 68978897 ~ 68988139 (+)
G538799 NA non-coding upstream 22057 68859291 ~ 68859533 (+)
G538788 NA non-coding upstream 33262 68848040 ~ 68848328 (+)
G538785 NA non-coding upstream 35824 68845558 ~ 68845766 (+)
G538565 LOC106587420 non-coding upstream 171962 68707409 ~ 68709628 (+)
G538564 NA non-coding upstream 174290 68706919 ~ 68707300 (+)
G538851 NA non-coding downstream 1284 68900795 ~ 68901024 (+)
G538852 NA non-coding downstream 2870 68902381 ~ 68903425 (+)
G538856 NA non-coding downstream 5032 68904543 ~ 68904854 (+)
G538857 NA non-coding downstream 5645 68905156 ~ 68905406 (+)
G538858 NA non-coding downstream 6107 68905618 ~ 68905910 (+)
G538607 NA other upstream 69700 68811119 ~ 68811890 (+)
G538561 NA other upstream 176894 68704398 ~ 68704696 (+)
G537617 atxn1l other upstream 1113977 67766756 ~ 67767613 (+)
G537606 NA other upstream 1124972 67754556 ~ 67756618 (+)
G538859 NA other downstream 6534 68906045 ~ 68906847 (+)
G538877 LOC106582599 other downstream 96572 68996083 ~ 69002828 (+)
LOC110526955 LOC106587395 other downstream 112095 69007055 ~ 69018414 (+)
G539068 NA other downstream 462130 69361641 ~ 69367642 (+)
G539959 NA other downstream 1116831 70015270 ~ 70019477 (+)

Expression


Co-expression Network