LOC110526452 (LOC106587404)


Basic Information

Item Value
gene id LOC110526452
gene name LOC106587404
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68922838 ~ 68936761 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607445.2
ACCACCgttaaacctcatcgaagaagAAAGAAGCTTGAGTGCCTCTGTTGTCCCTCCGATTTACATCCTCACTCTTTGCTTTTTCTGACATTCTGCGCCCCGGCCACCTGCTCGACCATGGCTCTGTTGAAGTCCAGCAAGGTAATCTCCAGTATTGGGACTTTCTCCCCATCCCTGGGAGTTTTGTCTACCCGTAACAGCTCATGGTGGGGTGGAGTGCAGATGGGTCCCCCTGACCCCATCCTGGGGGTGTCGGAGGCCTTCAAGAGGGACACCAGCCCGAAGAAGATGAACCTGGGGGTGGGAGCCTACAGGGACGACCACGGCAAACCCTTTGTGCTCGATTGTGTCCGCAAGgcagaGGCTCTGATTGCTTCCAAGCAGTTGGATAAAGAGTATCTGGCCATCGGTGGTCTGGGGGACTTCACCAAGTCCTGCGCTCAGCTAGCCTTGGGGGCTGACAGCGAGGTCCTCAAGAGTGGCAGGaaCATCACTGTCCAGACCATCTCAGGAACCGGCTCCCTGTGCATTGGAGCCAACTTCCTGTCTCGTTTCCACAGTGCGTCCCGTGACGTGTACCTGCCCAAGCCCTCCTGGGGGAACCACACACCCATCTTCAGAGATGCTGGCATGCAGCTGAAAGCCTACCGCTACTACGACCCCTCCACCTGCGGCTTCGACTTCAACGGGGCGCTCGACGACATCTCtAAAATGCCAGAGAAGAGTGTGATCATGCTGCATGCCTGTGCCCATAACCCCACCGGTGTGGACCCCAAGCCTGAGCAGTGGAAAGAGATCGCTGACCTGGTGAAGAAAAGGGACCTGTTGGTGTTCTTTGACATGGCCTACCAGGGTTTTGCTAGTGGAGATATTGATCGTGATGCCTGGGCTGTTCGTCACTTCATCGAGCAGGGCCACAAAATTGTCCTGTCTCAGTCCTTCGCTAAGAACATGGGCCTCTACGGTGAGCGAGTGGGAGGGTTCACTGTGGTGTGTAACGATGCCGAGGAAGCTAAGAGGGTGGAGTCTCAGCTGAAGATTCTGATCCGGCCAATGTACTCCAACCCTCCAATGAATGGAGCCAGAATCGCTGCCACTATTCTCAACACACCAGACCTTTATAAAATCTGGTTGGAGGAGGTCCACGGCATGGCCAACCGCATCATCAAGATGAGGGAGCAGCTGGCGGCCAACCTGAAAAACGAGGGCTCCACTCTCGACTGGCAGCATGTCATCGACCAAATCGGCATGTTCTGCTTCACAGGCCTCAAGCCTGAACAGGTTGAGCGTCTGACTAAGGAGTTTTCAGTGTACATGACCAAGGATGGTAGAATCTCCATGGCAGGCGTCACTTCCAGCAACGTGGGATATCTAGCGCATGGAATCCACGCCGTCACTAAGTAAAAAGGAGAATGCTGGGAGAAACAGCAGGGCACGGTGGTGCTGGACACAATCCAAATTAAAATAACTGAAAAATAGCATTTTGTGTCATTTTACTCTCCCTGCCCTCTCCACCCAGACTGTCAATTGTTCAACTTTGACCTCAACCTACCGCAATGAGGGTTAAATGGTTAGTTCCCTGTGACCTCCCCAATGAGGCCACCATGTCAAAGGTTGTTTAGTGAAAGTCCAATGATCTGCCCTACATTTGACTAATGAGCTGATGTCTCTCTTCTATGCTTATTTATTGTATATCAAAGGTTAATATTAATTAACTTAACCTGTCATTATTAAGCCATGTATTAACATTATATTTTAAACCTACTCTGCCTGCTGTGGTCCAAATTACTGTAAGGCTACAGATGAGTTTACCAACACTTAGGCTCTGTTGTGTGTGAACTCTTGTCTGTCATTGCATATTTCTGTAGGATGTGAAAGTTCAACGTTTCCTCAACACCAGTAGAGTAGCAGAAAACAATTAGTTATAAGATAGTGCCAGACAATCTTTAGATGAGATAGTCATTGATATTTTAATATGCTTTAGAAATGGACAATAATGTATGATCATTCAGGCCTTTCACTCAGCCTCTCTTGCATTTCCACTTGCATTATCTTGTCTTCGATACTCACTATAAATAATTATATTACTGTAAACGTTTTGTGCTTTTTGCGCTAAGAGCAGAGTCTACTGTGTTTCTTCTAAGTGTTGATGAGtgagcagtcagccagccagtcttaAATGCCCACTGAATgttcctctcacccccccccccccccccaagcaatGGTTTATGAGGTTTTAAATGTGCAATATACAGAAGTCGctctgtcatttcctggttgctaaaattctaatagtttgcctaatctCAGTTTGACGAGTAATGTttagaatcattgtaccatctaaaccgctgtggaATATATCTTCAATAACCGAAAgtgttgtattttcagctgttggtgtacaaaactgaaagtaagaTGCAAAAATGAAAGTTAATGGTAAGCAGAGACAGCgcacagaacagatctactgcttcttagacttgcttacAATGAAAATGTCTGATCTAACTAAACAATTCCATTTGAATTTGGTCCAAAAAGTCAAATTGCAGCTTTAAAAGGATAGACTGTCCTATGATGGTGCTCTTGTATTTCCACAAGAAAAGGCATTTTACAAGTGTTATTTAGATCACTGGGCGACTCCTATCCCCTCCGTTTCAGAACCAAGAGGTTATAGGACTTCTATTAATATATATAGAAAGTTGTATAGACAGTGTTTTGCTCCAATGATCAGCCTTTGAacattttctctgtgtgtgtcttcctgaTTGTAACAAGACAGATTGTGCAAGGAAATTCACCTTTCTGCTGTCTACTCATGAAGCTTAAGCTGCGCTGTCACCATTTTCGGGTTAGCgcaaaaataataaaacatggaGCATCGGTCAAGTCTTTCTCTGAACAATTAAAAAAATATCTATCATTGAAA

Function

NR:

description
aspartate aminotransferase, mitochondrial-like

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0080130 L-phenylalanine molecular_function
GO:0004069 L-aspartate molecular_function

KEGG:

id description
K14455 GOT2; aspartate aminotransferase, mitochondrial

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607445.2 True 2938 mRNA 0.46 10 68922838 68936761

Neighbor

gene id symbol gene type direction distance location
LOC110526451 LOC106587405 coding upstream 23327 68881590 ~ 68899511 (+)
LOC110526954 cmtr2 coding upstream 66605 68848671 ~ 68856233 (+)
LOC110526448 tha11 coding upstream 104069 68816939 ~ 68818769 (+)
LOC110526444 LOC106587414 coding upstream 142521 68775474 ~ 68780317 (+)
LOC110526436 LOC107688027 coding upstream 241163 68679317 ~ 68681675 (+)
LOC110526454 LOC106587403 coding downstream 1881 68938642 ~ 68946874 (+)
LOC118965123 NA coding downstream 18504 68955265 ~ 68955385 (+)
LOC110526457 LOC106587399 coding downstream 28294 68965055 ~ 68977010 (+)
LOC110526456 LOC106587398 coding downstream 42136 68978897 ~ 68988139 (+)
LOC110526955 LOC106587395 coding downstream 70294 69007055 ~ 69018414 (+)
G538869 NA non-coding upstream 6538 68916056 ~ 68916300 (+)
G538867 NA non-coding upstream 8802 68913773 ~ 68914036 (+)
G538864 NA non-coding upstream 11301 68911221 ~ 68911537 (+)
G538863 NA non-coding upstream 12006 68910594 ~ 68910832 (+)
G538858 NA non-coding upstream 16928 68905618 ~ 68905910 (+)
G538906 NA non-coding downstream 24454 68961215 ~ 68961454 (+)
G538907 NA non-coding downstream 24904 68961665 ~ 68961869 (+)
G538878 NA non-coding downstream 54077 68990838 ~ 68992839 (+)
G538925 NA non-coding downstream 82088 69018849 ~ 69019053 (+)
G538931 NA non-coding downstream 105860 69042621 ~ 69044027 (+)
G538859 NA other upstream 15991 68906045 ~ 68906847 (+)
G538607 NA other upstream 110948 68811119 ~ 68811890 (+)
G538561 NA other upstream 218142 68704398 ~ 68704696 (+)
G537617 atxn1l other upstream 1155225 67766756 ~ 67767613 (+)
G538877 LOC106582599 other downstream 59322 68996083 ~ 69002828 (+)
G539068 NA other downstream 424880 69361641 ~ 69367642 (+)
G539959 NA other downstream 1079581 70015270 ~ 70019477 (+)
LOC110525047 psf2 other downstream 1099433 70036194 ~ 70039507 (+)

Expression


Co-expression Network