LOC110526454 (LOC106587403)


Basic Information

Item Value
gene id LOC110526454
gene name LOC106587403
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68938642 ~ 68946874 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607446.2
GCACTTTGTTTTTAAAGACGTAATTTTACATTGTCACATGATCACATCCCAATCAAGTCACATGCCACCGTTGCTTGTTCAGAAGGAATTTCATTCCACGTGCGGTTGTTGCAGAGAAACACAAGAATcggagagacaacagagagATTGATGAAAGGGTTGACTGCTGGGTGACACTACATCCACTTTGAGGATAAACTGACAAGCAATCATCTGTGTCCTAAATGTCACAAGAGCCACAACAAACTTTCAACCTTCAGACTTACCCCTCAACCCAAACTCTGAATACCCGCAACTCAGCTCTTTAGTGTTGAAGTCTGCATCGAACAGAGTAGGGTGAATTTGAGGGTGTTTTAGATCGTGTTTTTGGGACTGTGCCTGCCGGGTTGTGTCCCATGGCGATTAACAGTGAGGCGGGGGACTGGGCCGAGGCTGGGATTGAAGATGCTGGTGAGAGGGCGTGGCTACTGCAGAGCCCCGTTGTGGAGTCCGTTCACCCCCCTTtgtcagacagggagaggagtggaggggtgtcTGCCACAGCCGCTGTCTTCATTGTGGTGAACGCTGCGCTGGGGGCAGGACTACTCAACTTCCCCGCCGCCTTCAACATGGCCGGAGGCGTGATTGCAGGGGTGGTGCTACAGATGTCCATGCTGAGTTTCATCATCAGTGGTCTGGTGATCCTGGCATACTGCTCCCAGGTCAGTAATGAGAGCACCTACCAGGAGGTGGTGCGGGCCTCGTGTGGGAAGGTCACCGGTGTAATCTGTGAGGTGGCCATCGCTGTCTACACCTTCGGCACCTGCATCGCCTTCTTTATCGTCATTGGAGACCAGCTGGACCGCTtGATGGCTGCAATAGCTCATTTGCCAGACGGTGTGGTCGGTGGTCACTGGTACATTGACCGTAAGTTCACCATTTGTGTGACCGCCGTCCTGGTCATtctgcctctctccatccccaaaGAGATTGGCTTCCAGAAATACGCCAGTGCGCTGAGTGTTGTTGGCACCTGGTATGTCACCATTGTGGTAATACTGAAATACATCTGGCCTGATAAAGAGATGACCCCTGGCTACATTCCAACCAGCCCGTCCTCCTGGAGTGCAGTTTTGAACGCCATGCCCACCATATGCTTTAGCTTCCagTGTCATGTGAGCAGTGTGCCAGTGTTTAACAGCATGAGGAGGAGTGAACTCAAGCCCTGGGGAGGTGTGGTCACCGTCGGCATGATCATCTGCCTCTTTGTCTACACTggcacagGTGTCTGTGGCTTTCTGTCATTTGGGTCTAACGTCAGTCAGGATGTGCTGATGTCATATCCTCCTAATGACATCGCCGTGGCGATCGCAAGGGCCTTCGTCGTCATCTGTGTTATCACCTCCTATCCCATTCTACACTTCTGTGGCCGGGCGGTGCTGGAGGGGCTATGGCTCCGTTTCCACGGCGAGCAGGTGGAATTGTGTGTGAGGCGTGAGCGGAGACGCAGAGTGTTGCAGACGCTTGTGTGGTTCACGGTCACACTCGTCCTCGCACTCTTCATCCCCGACATTGGCCGAGTCATCTCCCTCATCGGAGGACTGGCAGCCTGCTTCATCTTTGTCTTCCCAGGTCTGTGTCTGATTCAGGCAAAGCTCTCAGAAACAGAGGTTCGATCTGCTAGCTGGCATGGGATGGTGGTCTACGGCGTCATCATGGTAACCATCGGCACTTTCATCTTTGGCCAGACCACCACCAATGCCATCTATCAAGACGCCATCCACTATTCGGACAGCCAATAGAATTCTGACCAGGAAGACTCTTTGCTGGAGGAGGATGCAGGTCTATGCTGCTATTCTGAACTTTATTGACTTGTATCAGGATGTCGAGGATCCAACACATACATGCAAACACACTCCCTCTTGTGACCTCTCCTGCACATCTCGTTGTCTCCCTGATGATGAAACCGCTCCATAGCAAGGACTCGTGTCACCTATGGAGCGATGCTCTAGGATTAGATGATTCCTGAGAGCAACCTCTGACAAGGGACCTACCTTTTCAAAAAGATTATGCAAATGTTATGTTTTTgattttaatttattttcacCCCGTTGTGGGCTGCAGTACCAAATCTGTCTTGACATTCTCAACCCCTCCCTATGCCTTTCCCTGCTGGTCCAGCATGCACCACTGCACTACAGGTGGCATCCCATCCTTCAAGAAACTGGGCAGTGGGAGAGGGTACCTCTCTCTAATTGGTGTTGTTACTGATGAGTAATGAACATACTGTTTTAAGAATGTGGCCAAACATTTCCATCAATTTTTTTTTATAGTAATTTTACAATTCCAATGATCAAGTGGTTTGAAGACGTATCCTgcaactgcagttctgaaatctATGTAATGTGGCAAGTGTATTATAATTAAGTGATTTTGAATGCTTTGAGATTTCAGAAGTCTGGGGTCTCAGGCTGATTCCTGTGGTTAAATGATTGTATATGGCCTAGCTTTAAACAGACAGATATTTTAAATGTGCTTTACTGATAGAGATTAgctatagactacagacagagGTAAGGGACACAAATCTATCATGTTCAAAGGGATTGTTCCTCAGGGCAGCAATTACTGTTTTACAATGACTTGAATGAGATTGGAAATGCTTGAAATTCAATtactttttattgttttattccaTAATTGGAGCCAAGGGAAATAGTTTTTTCTGAACTGAACCAATTTAGTAATCAGGTTGAACAATATGCAGTCTTATTGTCATGAATTATCCTGTTATCAATCTACAATTTAATAAACATGACGGTTTTGTCATTGAATTCA

Function

NR:

description
putative sodium-coupled neutral amino acid transporter 7

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K14994 SLC38A7_8; solute carrier family 38 (sodium-coupled neutral amino acid transporter), member 7/8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607446.2 True 2820 mRNA 0.48 12 68938642 68946874

Neighbor

gene id symbol gene type direction distance location
LOC110526452 LOC106587404 coding upstream 1881 68922838 ~ 68936761 (+)
LOC110526451 LOC106587405 coding upstream 39131 68881590 ~ 68899511 (+)
LOC110526954 cmtr2 coding upstream 82409 68848671 ~ 68856233 (+)
LOC110526448 tha11 coding upstream 119873 68816939 ~ 68818769 (+)
LOC110526444 LOC106587414 coding upstream 158325 68775474 ~ 68780317 (+)
LOC118965123 NA coding downstream 8391 68955265 ~ 68955385 (+)
LOC110526457 LOC106587399 coding downstream 18181 68965055 ~ 68977010 (+)
LOC110526456 LOC106587398 coding downstream 32023 68978897 ~ 68988139 (+)
LOC110526955 LOC106587395 coding downstream 60181 69007055 ~ 69018414 (+)
LOC110526458 LOC106587394 coding downstream 84008 69030882 ~ 69133616 (+)
G538869 NA non-coding upstream 22342 68916056 ~ 68916300 (+)
G538867 NA non-coding upstream 24606 68913773 ~ 68914036 (+)
G538864 NA non-coding upstream 27105 68911221 ~ 68911537 (+)
G538863 NA non-coding upstream 27810 68910594 ~ 68910832 (+)
G538858 NA non-coding upstream 32732 68905618 ~ 68905910 (+)
G538906 NA non-coding downstream 14341 68961215 ~ 68961454 (+)
G538907 NA non-coding downstream 14791 68961665 ~ 68961869 (+)
G538878 NA non-coding downstream 43964 68990838 ~ 68992839 (+)
G538925 NA non-coding downstream 71975 69018849 ~ 69019053 (+)
G538931 NA non-coding downstream 95747 69042621 ~ 69044027 (+)
G538859 NA other upstream 31795 68906045 ~ 68906847 (+)
G538607 NA other upstream 126752 68811119 ~ 68811890 (+)
G538561 NA other upstream 233946 68704398 ~ 68704696 (+)
LOC110526436 LOC107688027 other upstream 256990 68679317 ~ 68681675 (+)
G537617 atxn1l other upstream 1171029 67766756 ~ 67767613 (+)
G538877 LOC106582599 other downstream 49209 68996083 ~ 69002828 (+)
G539068 NA other downstream 414767 69361641 ~ 69367642 (+)
G539959 NA other downstream 1069468 70015270 ~ 70019477 (+)
LOC110525047 psf2 other downstream 1089320 70036194 ~ 70039507 (+)

Expression


Co-expression Network