LOC110526457 (LOC106587399)


Basic Information

Item Value
gene id LOC110526457
gene name LOC106587399
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 68965055 ~ 68977010 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980843.1
TTGGCTAAGATGAAAATCTGATGCGCCGCTCCATGCTTCGTTCGGTGTTAAGTTCGCTGTACGCGAGACATTAGTTAACAGGAAGAAAAATGCATTGGTTCTGTTGGATGAAAGATGTAGTAGGAGGGAGTTTTTAAACTGCCTTTCGAATATTAGTTAAGTACATGCCCTGAGTGATAGCTTGCTTACAATAATATATCGATGAAACAAACTCAACTTGAATAGCGTTCCAGTGTTGCTTTGAGGACAACTCACGAACTAATTGACGCTCCCTACGCTTGAAACCATCCCAGCTTTCAGCCCGCTTCCAACGGCTCTAGCCCATTGCTTGGTGGCTGCTTACTGTGTTCTGGCCCACGGGGAGACGAACTGTACTGACCACACTGACCCCGTAGTTGGCACATCCTTCCCAGGGTTGCAACTATCCCCGCGGTTGCACTGGAGTAGGACGGTCGAGGGCATAGGCCCGGTGCTTTACAGCATTTAGGGAAACCTCCCATTCACTATATCATCCAACCGATTCAGACAGGTTATGGAGCTGGAGGTGAGCCAAACGGAGCTTGAAGGTTCCGACGCTCCCCAGTCTCAGAGACACGAGAGGAGCCTCGGACTTCTCACCACGAAGTTCGTTACTTTGCTGCAGGAAGCGAAGGACGGGGTGCTCGATCTCAAAGTAGCAGCAGACACCCTGGCCGTCAGACAGAAGAGGCGCATCTATGACATCACCAATGTACTGGAGGGCATTGGCCTGATCGAGAAGAAGTCAAAGAACAGTATTCAGTGGAAGGGAGTTGggccaggctgtaacacaagggAGATTGGTGACAGGCTGGTTGACCTGAAGTCGGAGCTTGAAGATCTGGATATGAGGGAAAGTGAGCTGGACCAGCAGAGGGTGTGGGTCCAACAAAGCATCAAGAATGTGACCGAGGACACACACAATAGTCTTCTGGCCTATGTTAATCATGAGGACATCTGCAGCTGCTTCAAAGGTGATACCCTCTTGGCGGTGCGTGCTCCCTctggtacgcagctggaggtgcCCATACCTGAAGCTGTTCAAAACGGTCAGAGGAAGTATCAGATCCATCTGATTAGCGCTGCTGGGCCCATTGATGTTCTGCTCATCAACAAGGACCCAGTTAACTCAACACCTGTGGTGCTGCCAGTCCCGCCGCCTGAGGAAATGCTGCAGAACACCAAGTCTGCTGCAGCCTCTGCAGACACAACCATtaacacacccactcacacattTGTCAAGACCACCCAGAGTCTGGCCACCGGCAAGCCTAAAGCACATACAGCAGCTAAGCCATCAGACAATTTGAGCACTGAAAAATCTGTACCGCAACCACCATCATTGGACACCCGGTCCCTCCAGTCTTCTGCTTCGTTGGACAACAACTTCACTGTCTTTGAACCAATCAAATCCGATTCATCTGACTTGCTGGATTTCCCCAAATACTTTTCTGACATGTTTGACCCCGCTAAAGagaTGtgtTTTCTCCACTCCTCCGCCTTTCCCCCCCCCCGGGTGACCATGACTACATCTATAACCTGGATGAGAGCGAGGGCCTCTGCGATCTCTTTGACATCCCCGTCCTCAACCTTTGACCTATGAACCTTGCCAGAAGGCTTTTTAGAAAGACAAGAACAGTTTTTAAACAATTCTTTGAGTACTAACAAAACGATGAAGTGGTCTATTTTTGGAGTCTTGTAATATAAGCTGAATTGATAAACAAACCGTTTTTGATAATTTTCATACTCTTTATTTTTGTCACGTCCCCTTCGTTGATGTCTGAACAGGGAGAGCAGCCATCCCCCTACTGGCTTATAAGCTTTAATGATCTCATGGAATATATTGTTTTGATCTGTGCTGCTGAAGTGGCAGTGGATGTGTTTTAAAAGTTGAGTTGTGCTCCATTTGGAGTGAGTAAAGATGGCTTGGGTTGAGTGAAGGATAGGAAATTAATGGGATGCTCAAGGCAAAATCATATACGATACCTAGGCACTTATGTACATCCGAAACTATTGGATAGTAAGCAATAAGACAATTCCAGCTAGTCTTTTAGATGGCAAGGTAGAGTTATTGCCATATTGCAGACCTATTTGATCCTTTCAGATCTACATGGTGACTAAGGGTAGGTAGGGATTGGTGCTGTGAGGAGCTTCATTGTTTGTCTACGGTCAATGAGCTGTGCATGTGAGGAGTGCAGCTACTCCATTGCCCACATAGTGGTCTTAGAGTCACAGCGGGAAGAGAAGATCAGCTCCCTCACCTGCCGCAACCTAGTCTCTCCTATGAGTCAGGCACACAAGACCAGCCACAATATACTGACAACATGTAAATCCATTAAAAGCCTTTACCAGTCCTAATCTAGTTATACTATTGATGAGGCTTCAGTTGCTGGTGCATGTTATATCTTGTCTGTTTCTCCCTCAAAGTCTGTGTCCATGTGGAGCACATTTTTGTTGTAATTTTCACGTCTCAACACTGATTTCTATTATAAAATGCTCTTTATTTTTGGTGTATTTTTCTATTGAACTGACACTGTCAaggaacagtacagtacatacattttttttgtctcgGTTATTTTACATCCGAATCCAGATTCAACTATGATATGTGTTCTTTCAGGAAGTTCAGAAGTGAATATTTTTCAAGTTTAGTGTAAAATCTGCTGTATCATTTGTATAGTTTGGTTGTATTGCATTTTTCTGTTTGTAACCTGCTCATGTTCTGATGAGTAAATTCATGAGATCACATCGGGGCGAACTGGAACCAGAAATCGGTCCTGGGAATTTTTGTCACCCCGGCCTATCTGTTCGATGCCGtatatttttggtcagtgtctGTGAAATGGGACGGCAGCAAATATGCAAAATTATTGTGAGAAATTTAAATAAAGTTTCTAAACTATTCTACAGGTGATTATATTGGTTCTATACATGTGTTAGTTTTTCTATATTATAGGGGGTTACAATTTGTATATCCCTTATCTCTTTCAATTCTGCA
>XM_036980842.1
AGATGAAAATCTGATGCGCCGCTCCATGCTTCGTTCGGTGTTAAGTTCGCTGTACGCGAGACATTAGTTAACAGGAAGAAAAATGCATTGGTTCTGTTGGATGAAAGATGTAGTAGGAGGGAGTTTTTAAACTGCCTTTCGAATATTAGTTAAGTACATGCCCTGAGTGATAGCTTGCTTACAATAATATATCGATGAAACAAACTCAACTTGAATAGCGTTCCAGTGTTGCTTTGAGGACAACTCACGAACTAATTGACGCTCCCTACGCTTGAAACCATCCCAGCTTTCAGCCCGCTTCCAACGGCTCTAGCCCATTGCTTGGTGGCTGCTTACTGTGTTCTGGCCCACGGGGAGACGAACTGTACTGACCACACTGACCCCGTAGTTGGCACATCCTTCCCAGGGTTGCAACTATCCCCGCGGTTGCACTGGAGTAGGACGGTCGAGGGCATAGGCCCGGTGCTTTACAGCATTTAGGGAAACCTCCCATTCACTATATCATCCAACCGATTCAGACAGGTTATGGAGCTGGAGGTGAGCCAAACGGAGCTTGAAGGTTCCGACGCTCCCCAGTCTCAGAGACACGAGAGGAGCCTCGGACTTCTCACCACGAAGTTCGTTACTTTGCTGCAGGAAGCGAAGGACGGGGTGCTCGATCTCAAAGTAGCAGCAGACACCCTGGCCGTCAGACAGAAGAGGCGCATCTATGACATCACCAATGTACTGGAGGGCATTGGCCTGATCGAGAAGAAGTCAAAGAACAGTATTCAGTGGAAGGGAGTTGggccaggctgtaacacaagggAGATTGGTGACAGGCTGGTTGACCTGAAGTCGGAGCTTGAAGATCTGGATATGAGGGAAAGTGAGCTGGACCAGCAGAGGGTGTGGGTCCAACAAAGCATCAAGAATGTGACCGAGGACACACACAATAGTCTTCTGGCCTATGTTAATCATGAGGACATCTGCAGCTGCTTCAAAGGTGATACCCTCTTGGCGGTGCGTGCTCCCTctggtacgcagctggaggtgcCCATACCTGAAGCTGTTCAAAACGGTCAGAGGAAGTATCAGATCCATCTGATTAGCGCTGCTGGGCCCATTGATGTTCTGCTCATCAACAAGGACCCAGTTAACTCAACACCTGTGGTGCTGCCAGTCCCGCCGCCTGAGGAAATGCTGCAGAACACCAAGTCTGCTGCAGCCTCTGCAGACACAACCATtaacacacccactcacacattTGTCAAGACCACCCAGAGTCTGGCCACCGGCAAGCCTAAAGCACATACAGCAGCTAAGCCATCAGACAATTTGAGCACTGAAAAATCTGTACCGCAACCACCATCATTGGACACCCGGTCCCTCCAGTCTTCTGCTTCGTTGGACAACAACTTCACTGTCTTTGAACCAATCAAATCCGATTCATCTGACTTGCTGGATTTCCCCAAATACTTTTCTGACATGTTTGACCCCGCTAAAGagaTGGTGAGTGCAGATCTACTAGAGGAACTTATGGCTTCAGAAGtgtTTTCTCCACTCCTCCGCCTTTCCCCCCCCCCGGGTGACCATGACTACATCTATAACCTGGATGAGAGCGAGGGCCTCTGCGATCTCTTTGACATCCCCGTCCTCAACCTTTGACCTATGAACCTTGCCAGAAGGCTTTTTAGAAAGACAAGAACAGTTTTTAAACAATTCTTTGAGTACTAACAAAACGATGAAGTGGTCTATTTTTGGAGTCTTGTAATATAAGCTGAATTGATAAACAAACCGTTTTTGATAATTTTCATACTCTTTATTTTTGTCACGTCCCCTTCGTTGATGTCTGAACAGGGAGAGCAGCCATCCCCCTACTGGCTTATAAGCTTTAATGATCTCATGGAATATATTGTTTTGATCTGTGCTGCTGAAGTGGCAGTGGATGTGTTTTAAAAGTTGAGTTGTGCTCCATTTGGAGTGAGTAAAGATGGCTTGGGTTGAGTGAAGGATAGGAAATTAATGGGATGCTCAAGGCAAAATCATATACGATACCTAGGCACTTATGTACATCCGAAACTATTGGATAGTAAGCAATAAGACAATTCCAGCTAGTCTTTTAGATGGCAAGGTAGAGTTATTGCCATATTGCAGACCTATTTGATCCTTTCAGATCTACATGGTGACTAAGGGTAGGTAGGGATTGGTGCTGTGAGGAGCTTCATTGTTTGTCTACGGTCAATGAGCTGTGCATGTGAGGAGTGCAGCTACTCCATTGCCCACATAGTGGTCTTAGAGTCACAGCGGGAAGAGAAGATCAGCTCCCTCACCTGCCGCAACCTAGTCTCTCCTATGAGTCAGGCACACAAGACCAGCCACAATATACTGACAACATGTAAATCCATTAAAAGCCTTTACCAGTCCTAATCTAGTTATACTATTGATGAGGCTTCAGTTGCTGGTGCATGTTATATCTTGTCTGTTTCTCCCTCAAAGTCTGTGTCCATGTGGAGCACATTTTTGTTGTAATTTTCACGTCTCAACACTGATTTCTATTATAAAATGCTCTTTATTTTTGGTGTATTTTTCTATTGAACTGACACTGTCAaggaacagtacagtacatacattttttttgtctcgGTTATTTTACATCCGAATCCAGATTCAACTATGATATGTGTTCTTTCAGGAAGTTCAGAAGTGAATATTTTTCAAGTTTAGTGTAAAATCTGCTGTATCATTTGTATAGTTTGGTTGTATTGCATTTTTCTGTTTGTAACCTGCTCATGTTCTGATGAGTAAATTCATGAGATCACATCGGGGCGAACTGGAACCAGAAATCGGTCCTGGGAATTTTTGTCACCCCGGCCTATCTGTTCGATGCCGtatatttttggtcagtgtctGTGAAATGGGACGGCAGCAAATATGCAAAATTATTGTGAGAAATTTAAATAAAGTTTCTAAACTATTCTACAGGTGATTATATTGGTTCTATACATGTGTTAGTTTTTCTATATTATAGGGGGTTACAATTTGTATATCCCTTATCTCTTTCAATTCTGCA

Function

NR:

description
transcription factor E2F4-like

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0000278 mitotic cell cycle biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K04682 E2F4_5; transcription factor E2F4/5

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980843.1 False 3019 mRNA 0.45 10 68965055 68977010
XM_036980842.1 True 3052 mRNA 0.45 10 68965062 68977010

Neighbor

gene id symbol gene type direction distance location
LOC118965123 NA coding upstream 9670 68955265 ~ 68955385 (+)
LOC110526454 LOC106587403 coding upstream 18181 68938642 ~ 68946874 (+)
LOC110526452 LOC106587404 coding upstream 28294 68922838 ~ 68936761 (+)
LOC110526451 LOC106587405 coding upstream 65544 68881590 ~ 68899511 (+)
LOC110526954 cmtr2 coding upstream 108822 68848671 ~ 68856233 (+)
LOC110526456 LOC106587398 coding downstream 1887 68978897 ~ 68988139 (+)
LOC110526955 LOC106587395 coding downstream 30045 69007055 ~ 69018414 (+)
LOC110526458 LOC106587394 coding downstream 53872 69030882 ~ 69133616 (+)
LOC110526459 LOC106562249 coding downstream 171320 69148330 ~ 69189966 (+)
rhcg rhcg coding downstream 245155 69222165 ~ 69228485 (+)
G538907 NA non-coding upstream 3186 68961665 ~ 68961869 (+)
G538906 NA non-coding upstream 3601 68961215 ~ 68961454 (+)
G538869 NA non-coding upstream 48755 68916056 ~ 68916300 (+)
G538867 NA non-coding upstream 51019 68913773 ~ 68914036 (+)
G538864 NA non-coding upstream 53518 68911221 ~ 68911537 (+)
G538878 NA non-coding downstream 13828 68990838 ~ 68992839 (+)
G538925 NA non-coding downstream 41839 69018849 ~ 69019053 (+)
G538931 NA non-coding downstream 65611 69042621 ~ 69044027 (+)
G538891 NA non-coding downstream 67060 69044070 ~ 69144935 (+)
G538977 NA non-coding downstream 238557 69215567 ~ 69216547 (+)
G538859 NA other upstream 58208 68906045 ~ 68906847 (+)
G538607 NA other upstream 153165 68811119 ~ 68811890 (+)
G538561 NA other upstream 260359 68704398 ~ 68704696 (+)
LOC110526436 LOC107688027 other upstream 283403 68679317 ~ 68681675 (+)
G537617 atxn1l other upstream 1197442 67766756 ~ 67767613 (+)
G538877 LOC106582599 other downstream 19073 68996083 ~ 69002828 (+)
G539068 NA other downstream 384631 69361641 ~ 69367642 (+)
G539959 NA other downstream 1039332 70015270 ~ 70019477 (+)
LOC110525047 psf2 other downstream 1059184 70036194 ~ 70039507 (+)

Expression


Co-expression Network