LOC110526955 (LOC106587395)


Basic Information

Item Value
gene id LOC110526955
gene name LOC106587395
gene type misc
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69007055 ~ 69018414 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036981775.1
ATGGGAAGTCTGAAGACCCTGGGCCTGCTGCCCAGTAAGAGCATGggcctcccctccctccagaAGCCTGTGGACAGGCACCGTCTGTCAGGCTTCCTCTACAATATCTCCATGTACCTCCAGGAGATGGGTGCTGAGCTGGAGGAGCGACAGCTCGTCTCTGACGAGGAACAACTGTGGGAGAAGGTATTGCAGTCCTTTATCCAGTCAGAGGGGGGCGCTGCGCTGAACCAGTGGGACACCCGGGAGCCCCCCAGGCCCAGCGTCAGACTCCAGGACTGGTTCCTGTCCCTGAGAGGCAGCCCTCACTGGGACGGGCTGCTGGGGCTTCTGCAGAGCCTCATGTCCCTGTCTGAGCGGCAACCCCACAGGCCCCTGCTTGACTTCCTGTCCCAGAACTGGAGGACAGTGAGTGCCCTGCTTGAGGCGGCCCTGCAGGCGCTGGTCAGCGGGACCTATGGCCAGGCCAGCGCCGGGCTGCAGGGCTTCATCTGTGCCCTTAGGGGCCGCAATGAATGTGCCTTCAGTGTCAGCTGGCTAACACAGTTTCTCCGCTTCATGGAGACACGCAACTGGAAGCCCGTGGTGAACCTGCaccctgcggggatgggggccaACCAGAGAAGGGGCTCAGCTGCTTTTGGGCGCCTGAAACCCTTCAGCATGCCCCCCAAGGCCCTGAGAGATGAGGGGTTGTCTCGGAATGCCACTCAAGGGGATGTTGGGGACAGAAGGGACATGGGGGGAGACCTGGACTCCCTTCATACACTGCTCCTGCAGGCTTTATCACGCTCTGATGGGGGGCAGAGGGCGGGGCAGCTGGCAGAGCAAAACCCTGCCCTGCTGCAGGGATTGGACGGCCTCAGAAGGGGATTCTTGCACAGGGTGGGCAGCTCCGTGTACGGCAACCTGAGGAGAAAGGTGTCCCGTGTTACCATGGCGCTGCTTGATGATGTCAGCAGCGTGGTGGACGTGACACAGCTCAAACATAAGGGCAGATGTTCCGTAGGTGACCTGAGACAGCTAATCTTATGGGGGATTAGACATAATGTCACATGGAATGCTCAGGCTCTGGGCTTCAACTCACAGGGGCCTCCCAgcacccctcccttcctctcctgccCAGCCATAGAGGGTGAGAGCGGGGACCCTAGACCCCCACCACGCCCCTCTCGCCCTAGACCAGCCCTGTCACAGCGCAGGGCACCCAAACAGAAACAACCACCCACCTCAACCCCAGTACCCCGCAGTTCCCGTCTCCTCAAGCCCCAGTCCGAGGCAGTAGAAGTTGGCCACAGCCACCTGAGAGAGATGGGGTACTTTGCCTCAGCAGAGATCCTGGAAGCAGCGTGTAACGCCTCTATCCCAGGCCTTACAGGTGTGTCCAACTTCACTGTGTTCCTCTACTGTAACCTGTTTGACGGGGACGATGGGTCTGTGGACCCGGAGGTTGGTCAGGTTGGACCCGACCTACACGCCACGTGTTCCGACGCCGCCTGGTACCTGTCTGCAGCCGAGGATGACTTCCTGTGGGTCCACGTCTGCAGCGAGTTCTTCGCTCACCAGTTCAACAACACTGTGTGTGCCAACACCTCCTTTTGGCTGCAGAGAGCACACCAGGCTGCAGAGATGAAGGACTACCACTACTTCAACCAGTCCAGTATAGGTGACCTGTGTGTGCAGCTGTcaggggaggtggtggagggcGGGGGCAGCCCAGGGCCTGACGAAGCCTGCCTGGCCCAGCTGGGCACCAGGTCACTCAGCGCCCAGGACTTCAGACGCTGCTTCCTGCCCAACACTTCTGCTCTGGTCTCAGCCCTGTGTGGCAGCGAGTCCCCTGAGGCCCATCCCTCCCACCCATCCCTTCCGGAGGGCAGCTGGGCTGCAGAGTACTGCTCCAGACTCCACAACTTCTCCCACCCTGAATCCATAGAAGACACATGTAACTACAGGAAGTGGAGCCTGCAGCATTTCACCAACGCCACCCTACTGGAGCTCTGTGGCAGTACAGAGGGGCTGAGGGAGTATGTTTGTAGCAATGCCACCCTCTACCGCCGGCTACTCTCAGCCTATCCTCAGTTCTCTGACCTTTGCGTTGACCTGGATGTAGAACAGGAGGACAGGAAGTGCTTCCTCCAGTGGTTCTTTGACATGCTCCCGGCGCCGTACGACTTTGACACATCACAGCTGTGTGTGAGTCCTGCTCCGCTGCTCTTGGAGGCACTGCACAGGctgagtgtgtgtgaggtggatgggGGTGAACGCGGGGGCTGGGTTGGGGCTGTGGGTTACGTGCTGAGGGTACTGGACTTTGTGGTTGGGCTCTCGGCGGGATtggatgagggggagggggaggtgaggcAGGGCCTGGGCCAGGCCATCCTCCTTTCCAGTCTCCTTGACAACGCTTCATTCTGGGCAACTCTGCGTCCCGACGCATCACTGAGCGTGCTCCAAACCGTGGGCTTGTTCCTGCGCAGGGAACAGAGCGCAGCTCTCAAAGAGGACCTGCTCAGCTGCTTCAGTCCTGTATTATGGGACCTCATTGAGAGAGAGGACAACTCCTCTGCCCTCAGAGTCCTAATGCAGGAGTACCTCCAAATGCCCAGGGAGAGTATCCGCACACTGGTGATGTCAGCAGAGAAAGATGCGGTGAAGAGGTTTCTGTCTCACATGCACCAGAGCTGGGACCAGCTGCACGTAGAGACCACTCAGAGAGAACTGCAGGCCATGGAGACCATGACGTCCGCCTTCATCCACAAGTTCCCTcgtgtgacccctgacctcttcGTCGACCTATCACAGTTCATACCTTTCATGTCCGTCTCTGACATCATGAGCTTCCCCACCTCCCTGATGGTCAACACCAGTGTGTTGATGGCGATCCGTGACCACAGCACAGAGATGAAGTCTCCACAGAAACAGGCATTTGTGAAGAGGCTCCTGCAGTCCAGTGTAGTGGGAGATGTCCCTTCCTGGCCACCATATTTCCTCAGCTCCATCCTCCCACTGCTCCCACATCTCCCAGTCAGCCAATTTCAACAGCTGACATCAGACCAGTTACCAGTGTATTACACCAGAGAGACGAGGGCATTATTTCTCAACAGGCTGGGAGTTCTGGTTTGTTACCTGAAACCAGAGGAGCTGCGTCCGTTTCTGCTGGCTTCCCCTGTGTCCTCTGCTCTTTGGCAGCAGctagctctctgtgtgtctgagggACTCATCAGTGATTCAGGCAAGGCGGTGCGGCCTCTGAATGCCAGCACTCTACCTCCTCCAGCACTGGCCACCCTCAGGGGTCTACTGCCCCAGCTAGGGTCTTCCTTCCTGCAGTCACTGCCCTCACTACAGCTCTTGGACCTGCTAACACAACCAGGTCTGCCCAGCTTCTCCCCAGCACAGCTCACCATGGATACACTGTGCAGGCTGAAACCCTTACTGCCTGGCCTGTCCCCTGCTGTGCTCAGAGGCATacactggtctgagatcagtggAACCACTCACTGCCAGTGCTGGCACACTCTACTGGCTGACCTGAAGCCTGCCCATAGAGCCATGCTCCACAGGGCACTGCAGGAGGCTTTAGCCAGCAACTCAAGGAACTTCACAGTGCAGCTCCAATGTCTCCTGCCGTTTGTGCCCCTGAGGGAGCTGATAGAGGTTCTGGATAGAGAGACATTCCTGAGAGATATGAGCCTGTACAGAGACCTGCCCTGGTCCCCCCAACAGGCTCAGCTACTTTTCAAGAGGATCCATCAATCTGAAATCATTACCAGAGACACTAGGAAATGCGTTGTAGAGGAGCTGCGGAAGAGACCAGAGGAAGACCTGGATGGTATAAGCCCCTGGTTTGCTGCAGAATTACCGGTGAACCTGATTGAGAGCCTGTCTAATACTTCACTGACAGCCATCCTGGCTCACATTCAGCAGCACTTTGTGGACTTCCTCAAGCTGCCCCGTCATAAGCAGATGGCCTTAGCAGAAAAGGCCATCACTGTGCTGAGCACCTCTCAGGGCCTGGCTGAGAGGGAGCTCAGGGTGGCCTCTGTGGACCTACTGGGGCCCCTGTTGCCCTTCCTGGACAGGGATACCCTGGGGCTGGTGGACAGAGGGGCCCTGGGGCTGCAACTGGATGAGCTGAGGGGGTACTGCCTGCCCTGGGACACCCTGAAGGACTTGGAGATGGTAGAGTGGGAGGCCTGGGGTGGTTGTGAGCTGGTTATGGCAGCACTGGGCCTGTGGGTATATGTCATGTATGCATTTATAACAGaaagctggtgtgtgtgtgtttattgtagAGAGGCATCGGCATGGACGGTTGGTGATGTGGAGCTTGTTGGCAGACTGTTGTTTactctctctccaaaacagaTCAACTCCATCCCACTGGTGGTGTTGAGTGCAGACACGGTGGAGGAGGTTCTGGCAGGTCAGTGGCGCTGGGAGAACAGTGATGTGGGTCAGGCCTGTATGTCCCAGTGTGTGGACCagaagggccagagagagaggatccACAGTCTGATACGGGGGGTTGTCAGAGCACAGAGCAGGAGAAAAGTCCCAAGCTGTGGTGACATAAGAGGCACCTTCCCCTCAGCATGGACAGCCAATCAGCTGAGCCGGATGGCAGGGGAGGAGTTGAGGCAGTGCGTGGAGGTCATAGGTCAGGACGCTTCACTGAGCCCTGAGCAGCGCCGAGCACTGTGGGTAAAGCTCAGGCAGGCCTACAGTCCAGTTAGAGGCCTGAGACCAGAGCAGGTCCTGGGGCTCGGCTGTCTGGTCACtgagctgggggagagagagctccAGGACATTAACCTGACTGACCTGGGTGTCCTGGCCTACCTGGGGGCTCTGACCGACTGGAGCCCAAAAAAGATGAGAGCAGCAGTTGTTGGTGTGATGCGGAAGCAGAAGTTGAAGGTGGAGCAGCTCGGAGCTGTAGAAGTGGCTTCTCTAGGACACCTGCTCTGTGGTTTAACACTGTCAGAGATCAACAGACTGGACCCCTACAACCTCAGCATGGCTGCTCTGTTCCTGAGGGAGCTGGCCCTGCCGTGTTCAGAGCAGCAGATGGAGGCTCTGACCGCCCGTCTCTCCAGTCCTCAGGCCTTTGGCCCCGTCAGTACCTGGGGCCCAGAGGTCTTCACTGAGATCGGCACACTAGCAGcgGGTCTGGAGGACATGGTTCTGTCTGCTCTGGTACAGGAGCAGATGGAGGGGCTCATCCCCGAAGCTATCGCCCTGATTCCCCCCACAAAGATGGCTGTGGTATTCAGTGCGGTCCAGCTGTCGTGGCTGAATGTGGAGCAGGCGTGGGTGGTCACAGAGAAGCAGTGGGCGGAGCTGAACAGTGGGCAGAGACATGCCTTGGGCCTGGCGCAGTATGAGGGGGATGTCCTGTTAGAGCACAGAGGGAGGAATGTGGCCCCGGCAACACGGTCAGCTGACAGCCTCACTGTGTGCTTATTGTCTCTATGCTGTATGTTATGGCAACTATCGTGCAACACACAGTAacccatttgtatttatttgttctTTGACCTTCTTTTATTGAATTGTAACATTTGTACTTAAAAATAAACCAAACATTTTGAACTGTGTTCCATTTGTATCCTGGAATGAACCCTTCACCTCATGCTATTCAAATGCCTGACATACTC
>TU610304
CAAATGCCCAGGGAGAGTATCCGCACACTGGTGATGTCAGCAGAGAAAGATGCGGTGAAGAGGTTTCTGTCTCACATGCACCAGAGCTGGGACCAGCTGCACGTAGAGACCACTCAGTCCTCTCAGAGAGAACTGCAGGCCATGGAGACCATGACGTCCGCCTTCATCCACAAGTTCCCTcgtgtgacccctgacctcttcGTCGACCTATCACAGTTCATACCTTTCATGTCCGTCTCTGACATCATGAGCTTCCCCA

Function

NR:

description
PREDICTED: stereocilin-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036981775.1 False 5666 mRNA 0.57 25 69007055 69018414
TU610304 True 259 TUCP 0.54 2 69011606 69011962

Neighbor

gene id symbol gene type direction distance location
LOC110526456 LOC106587398 coding upstream 18916 68978897 ~ 68988139 (+)
LOC110526457 LOC106587399 coding upstream 30045 68965055 ~ 68977010 (+)
LOC118965123 NA coding upstream 51670 68955265 ~ 68955385 (+)
LOC110526454 LOC106587403 coding upstream 60181 68938642 ~ 68946874 (+)
LOC110526452 LOC106587404 coding upstream 70294 68922838 ~ 68936761 (+)
LOC110526458 LOC106587394 coding downstream 12468 69030882 ~ 69133616 (+)
LOC110526459 LOC106562249 coding downstream 129916 69148330 ~ 69189966 (+)
rhcg rhcg coding downstream 203751 69222165 ~ 69228485 (+)
LOC118964925 NA coding downstream 261771 69280185 ~ 69293194 (+)
trnar-acg-7 NA coding downstream 283918 69302332 ~ 69302404 (+)
G538878 NA non-coding upstream 14216 68990838 ~ 68992839 (+)
G538907 NA non-coding upstream 45186 68961665 ~ 68961869 (+)
G538906 NA non-coding upstream 45601 68961215 ~ 68961454 (+)
G538869 NA non-coding upstream 90755 68916056 ~ 68916300 (+)
G538867 NA non-coding upstream 93019 68913773 ~ 68914036 (+)
G538925 NA non-coding downstream 435 69018849 ~ 69019053 (+)
G538931 NA non-coding downstream 24207 69042621 ~ 69044027 (+)
G538891 NA non-coding downstream 25656 69044070 ~ 69144935 (+)
G538977 NA non-coding downstream 197153 69215567 ~ 69216547 (+)
G538991 NA non-coding downstream 222879 69241293 ~ 69275222 (+)
G538877 LOC106582599 other upstream 4227 68996083 ~ 69002828 (+)
G538859 NA other upstream 100208 68906045 ~ 68906847 (+)
G538607 NA other upstream 195165 68811119 ~ 68811890 (+)
G538561 NA other upstream 302359 68704398 ~ 68704696 (+)
LOC110526436 LOC107688027 other upstream 325403 68679317 ~ 68681675 (+)
G539068 NA other downstream 343227 69361641 ~ 69367642 (+)
G539959 NA other downstream 997928 70015270 ~ 70019477 (+)
LOC110525047 psf2 other downstream 1017780 70036194 ~ 70039507 (+)
G540179 NA other downstream 1463536 70481950 ~ 70484368 (+)
LOC110526485 fam92b other downstream 1533381 70551763 ~ 70558098 (+)

Expression


Co-expression Network