LOC110526465 (LOC106587363)


Basic Information

Item Value
gene id LOC110526465
gene name LOC106587363
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69367059 ~ 69464483 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980852.1
AGTCCCATAACCTGATTGGTTCTCGACGAGTAAACCCTACATTCCATAAAGTTTTGCTTTGGCATCTTGTCTGACATGTGAATGAATTAATAGCGTTTCTCACAAATACCACTGAGGTGCTTATAAGCGCATTTTACACACTGGAAATTCACTGTACCCAGAAGATACCCAACCCAGCGCGCTTCGGGACTGAGTGTAAGCGCAGTACAGGATTAACTGAAAATGATTTGGATGCACGctgtcattgtgttcctgtgtCTTTGTCCAATCCTCGCTGCATTTGGGCAGGACTGTCCCAGCAGGCAGGACATGCAGAGCTCCCTAAAGCAGGTCCAGAAGCTGCTGTCGACCCACGAGGCTGCATACCTTCAGAGCCTCCGCACCCTGAGGAAGAAACTCAACTTGCTACAGAACACAGCCACTAAACAGACTGGCAAAGCAAACAATGATACCTGTCTAAAGCTGGACACGCCTGCCAACAGCAGGAAGTTGGGAAAGGCGCAGACCCCAGGTCACGAGGTTCACTTTCTGTGTGATGCGGGTTATGAGTTGGTGGGAGCAGAGAGCAGGATGTGTCAGGAGAGCCTCACCTGGAGCGGCCAGCAGCCCACCTGCCGCAACATAAATGAGTGTGCCTCGTCTCCCTGTCTGAACGGGGGGACATGTGTGGACGAGATGAACCAGTTCTCCTGCACGTGTACCAAAGGCTGGGCCGGAGCCACCTGCCAGAGCCCTGTGCCaacatTCTTTGTCACCATGACGAACACCTCGTCTGCCACCTCCTCTGCGGCTGCTGCCATCTCTCCCCCGGCTGTGACTGTTGGTCCGTTTGTCCGTCCGTCTCGCTGTACGCAGGTCCAGGGCACCACCCACTGCACCTGTGACCCCGGATACACCATCTCTGGGCGTGACAGCACCACTTGCACAGacatTGATGAGTGTGAGTTGTTCCACATGGGTCAGGCTGGCCGGCTGTGTTTACATGCCTGTGTTAACACTCCTGGAGGCTACCGCTGTACCTGTCCTGCTGGATACAATGTCACCCGCGACGGACGCAACTGCAAAGACATAGATGAGTGTGCCACCAGACTGAATAACTGCACCCGGGACCAGATGTGTATAAACACCTACGGAGGGTTCCAGTGTGTACGTGTGGACTGCCCCCGCATACGAAACTCCACCTACAGCAAAACCTCACCCCTGCGTTGCGAGCGTAACCCCTGCTCTGTGGACAACAAGGTGTGCTCTCAGGCCCCTAACTCCATCTCCCACCACTACCTGTCTGTCGTATCCAACCTGTCAGCACCACGCACCATGTTCCGTGTGTCGGCCCTCCGCCTCATGGGCGACACGCTGCGTTTCTCCCTGCTGGGCCGCGGGCAGGCCCGACGCCACTTCACGGTGCAGCGGTCAGACCGACAGACAGGCCAGCTGGTGCTGGGGAGCCCGGTGCAAGGCCCTGCTACACTGGAGGCAGAGGTGGAGATGACCGAGCTGGAGAAAGGGGTCCAGCTGGGGCGGTACATCACCAAGATCACCATGTTCATCTCCCAGTATGAgttctagagagggagagagaaaggtagggATTTAGAGGGTggaatgaggagagggaggagggagtacTGTGGTAAGAGTTTTGGAGTGTGGCAGTGGATagggctgggaggctgggaggggTGAGGCACTAAGTCCTAAGGAACAAAGAAGGACCTAAAGGAGAGGGAAGTTTAGTCGAGACATACAGGTATGGCAGGAACGGATGCATTTGGTAGAGTTGTATCAATT
>XM_036980853.1
GCGCGGCCCGGTTTCTCCGTGATTATCCTATTCGCTTGGGTGCTGTTCAGGGTCTGGAGGGTCACCATGAAAAACAGAAGCAGACACGAGGGACCAGTTAGAGACCCCATTGCTACTGAGGACTGTCCCAGCAGGCAGGACATGCAGAGCTCCCTAAAGCAGGTCCAGAAGCTGCTGTCGACCCACGAGGCTGCATACCTTCAGAGCCTCCGCACCCTGAGGAAGAAACTCAACTTGCTACAGAACACAGCCACTAAACAGACTGGCAAAGCAAACAATGATACCTGTCTAAAGCTGGACACGCCTGCCAACAGCAGGAAGTTGGGAAAGGCGCAGACCCCAGGTCACGAGGTTCACTTTCTGTGTGATGCGGGTTATGAGTTGGTGGGAGCAGAGAGCAGGATGTGTCAGGAGAGCCTCACCTGGAGCGGCCAGCAGCCCACCTGCCGCAACATAAATGAGTGTGCCTCGTCTCCCTGTCTGAACGGGGGGACATGTGTGGACGAGATGAACCAGTTCTCCTGCACGTGTACCAAAGGCTGGGCCGGAGCCACCTGCCAGAGCCCTGTGCCaacatTCTTTGTCACCATGACGAACACCTCGTCTGCCACCTCCTCTGCGGCTGCTGCCATCTCTCCCCCGGCTGTGACTGTTGGTCCGTTTGTCCGTCCGTCTCGCTGTACGCAGGTCCAGGGCACCACCCACTGCACCTGTGACCCCGGATACACCATCTCTGGGCGTGACAGCACCACTTGCACAGacatTGATGAGTGTGAGTTGTTCCACATGGGTCAGGCTGGCCGGCTGTGTTTACATGCCTGTGTTAACACTCCTGGAGGCTACCGCTGTACCTGTCCTGCTGGATACAATGTCACCCGCGACGGACGCAACTGCAAAGACATAGATGAGTGTGCCACCAGACTGAATAACTGCACCCGGGACCAGATGTGTATAAACACCTACGGAGGGTTCCAGTGTGTACGTGTGGACTGCCCCCGCATACGAAACTCCACCTACAGCAAAACCTCACCCCTGCGTTGCGAGCGTAACCCCTGCTCTGTGGACAACAAGGTGTGCTCTCAGGCCCCTAACTCCATCTCCCACCACTACCTGTCTGTCGTATCCAACCTGTCAGCACCACGCACCATGTTCCGTGTGTCGGCCCTCCGCCTCATGGGCGACACGCTGCGTTTCTCCCTGCTGGGCCGCGGGCAGGCCCGACGCCACTTCACGGTGCAGCGGTCAGACCGACAGACAGGCCAGCTGGTGCTGGGGAGCCCGGTGCAAGGCCCTGCTACACTGGAGGCAGAGGTGGAGATGACCGAGCTGGAGAAAGGGGTCCAGCTGGGGCGGTACATCACCAAGATCACCATGTTCATCTCCCAGTATGAgttctagagagggagagagaaaggtagggATTTAGAGGGTggaatgaggagagggaggagggagtacTGTGGTAAGAGTTTTGGAGTGTGGCAGTGGATagggctgggaggctgggaggggTGAGGCACTAAGTCCTAAGGAACAAAGAAGGACCTAAAGGAGAGGGAAGTTTAGTCGAGACATACAGGTATGGCAGGAACGGATGCATTTGGTAGAGTTGTATCAATT
>XM_036980854.1
CCGGGCAGCAGAGCCTAGCGGTTGACATCTCAATCGCGTTGTGCTTGTTTTGTCCAGCAGAGGGGGCTGCTCCCTATAGCAGCTTCATTCACTCTTCTTCTACTAACTACTTGCTCACGCTAGTTTTAGAGAAAACTGCTGTGGAAAACTTTGCCAGAAGCTAGCAAGTGTCAAGTGAATCTATAACATCACCACAAACCTCTTTTCAAGCCAGGACTGTCCCAGCAGGCAGGACATGCAGAGCTCCCTAAAGCAGGTCCAGAAGCTGCTGTCGACCCACGAGGCTGCATACCTTCAGAGCCTCCGCACCCTGAGGAAGAAACTCAACTTGCTACAGAACACAGCCACTAAACAGACTGGCAAAGCAAACAATGATACCTGTCTAAAGCTGGACACGCCTGCCAACAGCAGGAAGTTGGGAAAGGCGCAGACCCCAGGTCACGAGGTTCACTTTCTGTGTGATGCGGGTTATGAGTTGGTGGGAGCAGAGAGCAGGATGTGTCAGGAGAGCCTCACCTGGAGCGGCCAGCAGCCCACCTGCCGCAACATAAATGAGTGTGCCTCGTCTCCCTGTCTGAACGGGGGGACATGTGTGGACGAGATGAACCAGTTCTCCTGCACGTGTACCAAAGGCTGGGCCGGAGCCACCTGCCAGAGCCCTGTGCCaacatTCTTTGTCACCATGACGAACACCTCGTCTGCCACCTCCTCTGCGGCTGCTGCCATCTCTCCCCCGGCTGTGACTGTTGGTCCGTTTGTCCGTCCGTCTCGCTGTACGCAGGTCCAGGGCACCACCCACTGCACCTGTGACCCCGGATACACCATCTCTGGGCGTGACAGCACCACTTGCACAGacatTGATGAGTGTGAGTTGTTCCACATGGGTCAGGCTGGCCGGCTGTGTTTACATGCCTGTGTTAACACTCCTGGAGGCTACCGCTGTACCTGTCCTGCTGGATACAATGTCACCCGCGACGGACGCAACTGCAAAGACATAGATGAGTGTGCCACCAGACTGAATAACTGCACCCGGGACCAGATGTGTATAAACACCTACGGAGGGTTCCAGTGTGTACGTGTGGACTGCCCCCGCATACGAAACTCCACCTACAGCAAAACCTCACCCCTGCGTTGCGAGCGTAACCCCTGCTCTGTGGACAACAAGGTGTGCTCTCAGGCCCCTAACTCCATCTCCCACCACTACCTGTCTGTCGTATCCAACCTGTCAGCACCACGCACCATGTTCCGTGTGTCGGCCCTCCGCCTCATGGGCGACACGCTGCGTTTCTCCCTGCTGGGCCGCGGGCAGGCCCGACGCCACTTCACGGTGCAGCGGTCAGACCGACAGACAGGCCAGCTGGTGCTGGGGAGCCCGGTGCAAGGCCCTGCTACACTGGAGGCAGAGGTGGAGATGACCGAGCTGGAGAAAGGGGTCCAGCTGGGGCGGTACATCACCAAGATCACCATGTTCATCTCCCAGTATGAgttctagagagggagagagaaaggtagggATTTAGAGGGTggaatgaggagagggaggagggagtacTGTGGTAAGAGTTTTGGAGTGTGGCAGTGGATagggctgggaggctgggaggggTGAGGCACTAAGTCCTAAGGAACAAAGAAGGACCTAAAGGAGAGGGAAGTTTAGTCGAGACATACAGGTATGGCAGGAACGGATGCATTTGGTAGAGTTGTATCAATT

Function

NR:

description
fibulin-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980852.1 False 1788 mRNA 0.55 8 69367059 69380686
XM_036980853.1 False 1620 mRNA 0.57 8 69367059 69387525
XM_036980854.1 True 1714 mRNA 0.56 8 69367059 69464483

Neighbor

gene id symbol gene type direction distance location
LOC110526464 NA coding downstream 37612 69321643 ~ 69329447 (-)
LOC110526463 LOC106587389 coding downstream 49563 69305573 ~ 69317496 (-)
trnar-acg-6 NA coding downstream 65845 69301142 ~ 69301214 (-)
LOC110526462 NA coding downstream 77897 69272988 ~ 69289496 (-)
LOC118964924 LOC106562250 coding downstream 94768 69125027 ~ 69272291 (-)
LOC110526474 LOC106562278 coding upstream 194000 69658483 ~ 69695479 (-)
LOC110526478 foxf1 coding upstream 271091 69735574 ~ 69739533 (-)
irf8 NA coding upstream 493598 69958081 ~ 69966024 (-)
dusp22a ds22a coding upstream 511462 69975945 ~ 70014932 (-)
LOC110526482 LOC106587370 coding upstream 550787 70015270 ~ 70024522 (-)
G539523 NA non-coding downstream 17172 69343207 ~ 69349887 (-)
G539398 NA non-coding downstream 200654 69133863 ~ 69166405 (-)
G539382 LOC103462559 non-coding downstream 246423 69118367 ~ 69120636 (-)
G539590 LOC106587385 non-coding upstream 66732 69531215 ~ 69539722 (-)
G539633 NA non-coding upstream 79200 69543683 ~ 69547459 (-)
G539635 NA non-coding upstream 85086 69549569 ~ 69550729 (-)
G539638 LOC106587382 non-coding upstream 102642 69567125 ~ 69567815 (-)
G539674 LOC106587381 non-coding upstream 151271 69615754 ~ 69616671 (-)
G539306 NA other downstream 361394 69002743 ~ 69005665 (-)
LOC110526455 LOC106587401 other downstream 413395 68949510 ~ 68953699 (-)
LOC110526447 LOC106587408 other downstream 555829 68807413 ~ 68816777 (-)
G538460 LOC106587433 other downstream 850378 68510315 ~ 68516681 (-)
G539714 NA other upstream 224424 69688907 ~ 69690015 (-)
G540376 NA other upstream 639315 70103798 ~ 70107175 (-)
LOC110526488 LOC106562298 other upstream 1186481 70623828 ~ 70666213 (-)
G541798 NA other upstream 2145048 71609531 ~ 71613840 (-)

Expression


Co-expression Network