LOC110526467 (LOC106587383)


Basic Information

Item Value
gene id LOC110526467
gene name LOC106587383
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69441369 ~ 69526649 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607458.2
GTTGGTGCTGCTCTAACTGCTCTGTCATTGATTCAGTAGTAACACAGTCGTCAGTccacagcctgcctgcctgcagagagagagccaaagcaggaagaaagaaagagaggacataaggagagaggaaaatagagtgattgtgagagagagaagcagggaaagCGTCCAgccatctgtctgtctccagtctgAAAGCCACAGCCGCCCTCTTTGTTTGGCGTCCCTGATATGACCCTGTTTAAAAGTGAGCACCACCGCAGCCCACGATACATTAGCATGAGTGGAGAGCTGAAGTCCAGCCGTTCCAGGACCAGCAGCAAGAGACCCAGCAGCAATCCATACGGATCTGACTATGACCTGGACTATGAGTGCTATCAGGAGGACCTCTATGACAGGATGTATGACTACCAGCGCGTGCCAGCTTCCCTACCTCCCCTGTCCCAGGGACCTAGCCTGGCCAAACGACCCcgctcctcctccacttcctctggGTACAGACGTAGCCGAGACAGGCCCCCCTCCAAGAGCTCCAGAGCCCACTccaccagctccaacagggccaAGTTGCGGATGGAGGAGCTGCAGGTCATTAAGAGGGAGCTGACCCTGATAAAGACACAGATTGACGGGCTGCTCGACAACCTGGACAGGATGGACACACAGAGGCGGGACCACACAGGGTCTCCCGTGAGGGAGGGCAGTTTGGCCGGGTCACCGTACCCCCCCTCCGCCAGCAGCGGTGACCGCTCCCCCTCCCCCCTATCCCCCCCACGCCACTGCATCCAGAGAGAGAGCCCCGAACTGGGGGAGGCCAGCGACGATGATCACACGatgAATAACCACAGTTCTGACCCTGAAGATGAGCTGTGAGGATGGAAACAGAGAAGAAACGGAGGAGCGCCAGACATAGAGGAAGAGAACATCTGTCTTGTCAAGAAGTTACCATGCCAACAACTGATTCAGAGGCCCCACTCCTGTCGAACCAACCAGTTACATTGTATTCTATATCCACATATACATCAacagcacacatacacagacacactgtaaTTACAGTTGATCAGAAATCAAGTATCTCCCTTGGATATTCACCACTGAGATCAGCTTAGATTACACACACATTTTATCTGCAGAGTGTAATTATTAACCAGAACAGGAAAGTGAAATAATTTCTATATTCATAATTTTCTTATGTTCTTTTTAGCCCGTCTTCGTATTTTCCAGAAAAACATTCTGATTACCAGTTCGTATAAATTTGACATGCATATTGAGAGACTGAGGGTATTTGAAATGAGCATACTATAGATGTCGCAATCATAGTTTTTCGGTGACTTGAGTTACTTTGTTTTATGTATATCATATCACTGCCAGAGCATGAGTCCATCAGTTGATACTTGTCCATCAGTAAATCCCCCCCCCCTTATGTCTGTGTAATGTTATCTCCCTGCTGTATTACTACCTGTCTGTATTAGGTATGAGGAGACAGTAGCCCATCTCTTCCTCTATGTACCTGGCGCTATGAGCTGAGGAGAGGCCCCGGCCCGGTCCATGCGTAAtattgtgtattactgtaaaACTTTACTGTATTAGGTCAGCTGTACGATTTTAATCCAGCattttattttagtattttttatttgttcGTGTTTTTTAAAGCGAGAAGAAAACAACAATGATAATTGTTTATTATAATTCCAGTGGTGTTAGATGTTTTGTTAGTTCTGTTTGCATTCATGAAGAAGCCAAGTGGAAACACTACTCACACTGTCACAGTAGTAAAGGTATTTTCATATTGATTAAAAACACCTCTGGGAGGAGTGTTTtttttagtgtg
>XM_036980855.1
gaacgagagaaggagagagaggagtgagtgaggtAGTGAAAGGATCCCGAGTTGAGGTGACAGGAACTCGACTGTTTACTCTCCGAACACAGCTGTGCTTAACCAAGAACTGGAGAGACATTAGCATGAGTGGAGAGCTGAAGTCCAGCCGTTCCAGGACCAGCAGCAAGAGACCCAGCAGCAATCCATACGGATCTGACTATGACCTGGACTATGAGTGCTATCAGGAGGACCTCTATGACAGGATGTATGACTACCAGCGCGTGCCAGCTTCCCTACCTCCCCTGTCCCAGGGACCTAGCCTGGCCAAACGACCCcgctcctcctccacttcctctggGTACAGACGTAGCCGAGACAGGCCCCCCTCCAAGAGCTCCAGAGCCCACTccaccagctccaacagggccaAGTTGCGGATGGAGGAGCTGCAGGTCATTAAGAGGGAGCTGACCCTGATAAAGACACAGATTGACGGGCTGCTCGACAACCTGGACAGGATGGACACACAGAGGCGGGACCACACAGGGTCTCCCGTGAGGGAGGGCAGTTTGGCCGGGTCACCGTACCCCCCCTCCGCCAGCAGCGGTGACCGCTCCCCCTCCCCCCTATCCCCCCCACGCCACTGCATCCAGAGAGAGAGCCCCGAACTGGGGGAGGCCAGCGACGATGATCACACGatgAATAACCACAGTTCTGACCCTGAAGATGAGCTGTGAGGATGGAAACAGAGAAGAAACGGAGGAGCGCCAGACATAGAGGAAGAGAACATCTGTCTTGTCAAGAAGTTACCATGCCAACAACTGATTCAGAGGCCCCACTCCTGTCGAACCAACCAGTTACATTGTATTCTATATCCACATATACATCAacagcacacatacacagacacactgtaaTTACAGTTGATCAGAAATCAAGTATCTCCCTTGGATATTCACCACTGAGATCAGCTTAGATTACACACACATTTTATCTGCAGAGTGTAATTATTAACCAGAACAGGAAAGTGAAATAATTTCTATATTCATAATTTTCTTATGTTCTTTTTAGCCCGTCTTCGTATTTTCCAGAAAAACATTCTGATTACCAGTTCGTATAAATTTGACATGCATATTGAGAGACTGAGGGTATTTGAAATGAGCATACTATAGATGTCGCAATCATAGTTTTTCGGTGACTTGAGTTACTTTGTTTTATGTATATCATATCACTGCCAGAGCATGAGTCCATCAGTTGATACTTGTCCATCAGTAAATCCCCCCCCCCTTATGTCTGTGTAATGTTATCTCCCTGCTGTATTACTACCTGTCTGTATTAGGTATGAGGAGACAGTAGCCCATCTCTTCCTCTATGTACCTGGCGCTATGAGCTGAGGAGAGGCCCCGGCCCGGTCCATGCGTAAtattgtgtattactgtaaaACTTTACTGTATTAGGTCAGCTGTACGATTTTAATCCAGCattttattttagtattttttatttgttcGTGTTTTTTAAAGCGAGAAGAAAACAACAATGATAATTGTTTATTATAATTCCAGTGGTGTTAGATGTTTTGTTAGTTCTGTTTGCATTCATGAAGAAGCCAAGTGGAAACACTACTCACACTGTCACAGTAGTAAAGGTATTTTCATATTGATTAAAAACACCTCTGGGAGGAGTGTTTtttttagtgtg

Function

NR:

description
RNA-binding Raly-like protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607458.2 False 1834 mRNA 0.47 7 69441369 69526649
XM_036980855.1 True 1683 mRNA 0.47 7 69442021 69526649

Neighbor

gene id symbol gene type direction distance location
LOC110526466 LOC106587388 coding upstream 18806 69387325 ~ 69422563 (+)
trnar-acg-7 NA coding upstream 138965 69302332 ~ 69302404 (+)
LOC118964925 NA coding upstream 148175 69280185 ~ 69293194 (+)
rhcg rhcg coding upstream 212884 69222165 ~ 69228485 (+)
LOC110526459 LOC106562249 coding upstream 251403 69148330 ~ 69189966 (+)
pdcd5 LOC106587385 coding downstream 4538 69531187 ~ 69539723 (+)
mvda erg19 coding downstream 15244 69541893 ~ 69550751 (+)
LOC110526470 LOC106587382 coding downstream 25850 69552499 ~ 69583243 (+)
mc1r mc1r_par1 coding downstream 63396 69590045 ~ 69591263 (+)
LOC110526471 tbb3 coding downstream 72504 69599153 ~ 69604659 (+)
G539105 NA non-coding upstream 13582 69408748 ~ 69427787 (+)
G538993 LOC106587389 non-coding upstream 131389 69307979 ~ 69309980 (+)
G538991 NA non-coding upstream 166147 69241293 ~ 69275222 (+)
G538977 NA non-coding upstream 224822 69215567 ~ 69216547 (+)
G539213 NA non-coding downstream 131849 69658498 ~ 69660305 (+)
G539239 NA non-coding downstream 160299 69686948 ~ 69687800 (+)
G539258 NA non-coding downstream 193287 69719936 ~ 69720174 (+)
G539265 NA non-coding downstream 218814 69745463 ~ 69745782 (+)
G539068 NA other upstream 73727 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 429407 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 438541 68996083 ~ 69002828 (+)
G538859 NA other upstream 534522 68906045 ~ 68906847 (+)
G538607 NA other upstream 629479 68811119 ~ 68811890 (+)
G539959 NA other downstream 489693 70015270 ~ 70019477 (+)
LOC110525047 psf2 other downstream 509545 70036194 ~ 70039507 (+)
G540179 NA other downstream 955301 70481950 ~ 70484368 (+)
LOC110526485 fam92b other downstream 1025146 70551763 ~ 70558098 (+)
cmc2 cmc2 other downstream 1088876 70615476 ~ 70621510 (+)

Expression


Co-expression Network