LOC110526470 (LOC106587382)


Basic Information

Item Value
gene id LOC110526470
gene name LOC106587382
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69552499 ~ 69583243 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607464.2
AATAGTTGGCATGCACCAAGATTGTCTACATGGAGCACCCGTAGAATAAACTCTTTGGCATGCGTATTTTGCTCATGTTGTTCATGGCTGAAGCTGGGTCAAATCCCAGCTGAACCATAACCCATCTTCGTGACAACTCTGTCCCGGGAAGATGTCGAGCCGTGCTCTGAGGAGGTTGAAGGGGAAACAGCGGGGGCAGGAGGCCCTGGACCTCGGTGATCTTGTCCCAGGTGAAGGGCCAGAGCCAGAGGAGCAGGCTGCGGATGTTGAGGAAGAAGAATTGGAACCGGATGAAGCTGTTCTCCAGTCTGATAAGAGCAGCATCAGAAAAGCTAAGAAGAATAAGAAAAACTTGAGCAACATTTACGAACTGATATGTGAAGCAGAGAAAGCCACGACGGATGAAGACACAGTGAAGCCAGAAGAACAGCATGGTGATGAAACCAAGGAGAAGAGTGACAGCGGggaaacagagaagagagatgcaCAGCCTGAGACAGGTGCTgcgaagTCCGGAGATAAAACAAGCaagaaaaagaagaaaaagaagaagaaaaagaacaCTACAGGAGATAAACAGGAGGGAGCTGGGGATGACATTGACGCGTTGCTGGAGACCATAGAGCAGTCTAATGGACTGACCCTGCAGAGTGAGGGCTGTGGAGCCTCAGACAACAGGCCTGTGCTCTATGTGGAACACAGGAACCTGAATCCTGAGACGGAGTTGAAGAGATACTTTGGAGCTCGAGCAGTTCTTGGAGATCAAAGACCtcgtcagagacagagacagttccATCGCAGCACTTGGATGACCATCCCTAAAAACACCTGGCCACGCTTCAGTCGCCCAGGTATCTCAATGACCCTACTGGAGTCCAGGGATGGTCTACAGTACTTCACCTTCGAGCACAGCCGGGACTACCAGCAGATTCAGTTCAAATTCCTGGACTCAGTGGAGTCCATGGATCCCAACAACATTGTGGCCCTGCTACAGATGAACCCCTACCACATTGACTCCCTGCTGCAGCTCTCTGATGTCTGCCGCATACAGGAGGATCATGAAATGGCCAGGGACCTAATCGagcgtGCCCTGTACAGCTTTGAGTGTGCATTCCACCCTGTGTGCAGCCTGACGTCAGGAACCAGCAGACTGGACTACCTGCGACCAGAAAACAGGGcattctacttggctggttataAGCACATGATGTTCCTGGAGAGGAGGGGATGCCCCCGGACAGCCCTGGAGTACTGCAGACTCATCCTGAGTTTGGACCCCGACAGCGATCCCCTCTGTATGCTACTGCTCATTGACTTCCTCTCCCTGCGCTCACGAGAGTACAACTTCCTCCTCCGGCTATACCAGGATTGGGAGgtGCACAGAAACCTGTCCCAGTTGCCAAACTTTGCCTTCTCTGTGGCTCTGAGCCACTTCCACCTGAGTCAGGAGGATCAGACTGAGTCAGAGGAGAGGGAACGGCTCAAACACAAGGCTGACCTACTGCTGCAGGACGCTCTCATCATGTTCCCTGGAGTGTTGATGCCTCTGTTGGACCTGTGCACAGTGCAGCCAGACGCTGCTGTATCATCACATGACTTCTTTGGACCCAGAAGCCAGTTGGGGCAGACTCCTGCCCTGGCTGAACTGGTGTCTCTGTACGTGGGGCGGACGCACaccctgtggagggagggaggggtcctGCTGTGGCTGGAGGAGTGTGTGAGGGAGGTGTTACGACGAGTCGACTCTAAAGACCCTCTGGTGGAGGACTGCCAAAACAAGAGGAAGCAGAGGTACCAGAGTGCCCCTCTGAACATCCATCGCCACGTCATCCTGTCTGAAATCAAAGAGGCCACCTCCACTCTACCGCTGGAGGTGACCACTCAGTCGGTGATGGGGTTCGATCCTCTCCCCCCGCTGGACTCCGTGGTCTCATATACCCGGCCTGAGAGGCAGAGTGTGGGAGCCTCCAATGAGAGCACCCTGTCACTGTTCTTCCGCTCTCTGCTGCCAAACTTCAACCTGCAGGGTGAGCCGATGCCACAGGATGACCTGGAAGTAGCTCAGGCGGGTCGGGAGCTGAACCAGGAAGTAAATCGTCTGATGGTGGCCATGAGGGACATGCTGGCCAACATCCAGTTTCAGGAGCCACCTAGAGAGGACAACCCTGACAGAGACGAGGGGGAGTGGGACTGAGATgaggaggatacagagagaggtggagtgagacttGAGGGAGGGGTACATAGAGATGGGAATGGATAGAAGAAAGTAAAAGGTTGATTAAGATGAATGGAGATGGAGTACAGCAGGGTGGTAGGAGGATGAAGAGTGAGTGAGGGAATAGATTCAGTGAGAGTAGCAATGACAGATGTACTGTAACCTTAAAGAAAGAAATGGCAGGTCATCAATATGACCCAAACATCAAACCAACTCTCCCTTTCTGATAAAGGCGCAGTAGTATCACCTCTTCCTCATGTCAtagtcagtcagtccatcaaccctctctccttcctcatgtTGTCCCATTCTCTTTCCTCAGGACAGTTGTTCTTAATGATCTAGAAGATCAGGAGGCTGCGTTCATCAAGAAATAAACCCGTTCAGTTGTTCTTTAAATCTTTTTTAAAGTAACATTGCTTATCAAAAAAATGTATATTGTCTTTCATCAGAAGGATAATTATGCCCTACTGCTACAGTATATTTGAAGTGGAATCATTTATGATTGAATAAATCCCTATGGTGTTGTCTTAGCAACCCAACGTCGTACACGCATTGACAGTCTActgccatatgggttgatgagAGTCAGGTTAAAGGCTAATGAGTGTCTGATAAAAGTCAGAATTATACAGTAAGTCACCTTATAAGTGGAACAAATGGACTTAACTTCTTATTCCATTTTTAATATTGGCCATAACAACTTTCATTTTGAACTTCGACTCCCAATTAACCCTGTTCATTATTGCTAAGACAACAGCATTTTAAATTCTATCTGATTTTGAGGATTAAATTCAAACTGATCAGGATATTTTTCTGTTGTGATTCTCTATAAAGAGGTATTTTGACCTTACCTGAAATCAATTCTAGGCTGTTTCTTAACTAGGGCCCGAAGTTGGTCCCAATGAGGTCACGTTGGCAGGAAAAACTCCTGTCCCAAGTCATCTGTTAATATCAGGAAGGGATTGCATCCAACCCACTACTGTAAATACTCTGCTTAGAAATCATTTATTACACAAGCTAATGTAAAGACAATAAACTTGCTGTGCATATGGTTCAATA

Function

NR:

description
transcription factor 25-like

GO: NA

KEGG:

id description
K24970 TCF25, RQC1; transcription factor 25

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607464.2 True 3283 mRNA 0.49 18 69552499 69583243

Neighbor

gene id symbol gene type direction distance location
mvda erg19 coding upstream 1748 69541893 ~ 69550751 (+)
pdcd5 LOC106587385 coding upstream 12776 69531187 ~ 69539723 (+)
LOC110526467 LOC106587383 coding upstream 25850 69441369 ~ 69526649 (+)
LOC110526466 LOC106587388 coding upstream 129936 69387325 ~ 69422563 (+)
trnar-acg-7 NA coding upstream 250095 69302332 ~ 69302404 (+)
mc1r mc1r_par1 coding downstream 6802 69590045 ~ 69591263 (+)
LOC110526471 tbb3 coding downstream 15910 69599153 ~ 69604659 (+)
LOC110526473 LOC106587381 coding downstream 27319 69610562 ~ 69642119 (+)
LOC110526472 LOC106587380 coding downstream 59032 69642275 ~ 69654389 (+)
trnav-cac-7 NA coding downstream 116822 69700065 ~ 69700137 (+)
G539139 NA non-coding upstream 75160 69474348 ~ 69477339 (+)
G539138 NA non-coding upstream 81257 69469984 ~ 69471242 (+)
G539105 NA non-coding upstream 124712 69408748 ~ 69427787 (+)
G538993 LOC106587389 non-coding upstream 242519 69307979 ~ 69309980 (+)
G539213 NA non-coding downstream 75255 69658498 ~ 69660305 (+)
G539239 NA non-coding downstream 103705 69686948 ~ 69687800 (+)
G539258 NA non-coding downstream 136693 69719936 ~ 69720174 (+)
G539265 NA non-coding downstream 162220 69745463 ~ 69745782 (+)
G539272 NA non-coding downstream 174643 69757886 ~ 69758091 (+)
G539068 NA other upstream 184857 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 540537 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 549671 68996083 ~ 69002828 (+)
G538859 NA other upstream 645652 68906045 ~ 68906847 (+)
G538607 NA other upstream 740609 68811119 ~ 68811890 (+)
G539959 NA other downstream 433099 70015270 ~ 70019477 (+)
LOC110525047 psf2 other downstream 452951 70036194 ~ 70039507 (+)
G540179 NA other downstream 898707 70481950 ~ 70484368 (+)
LOC110526485 fam92b other downstream 968552 70551763 ~ 70558098 (+)
cmc2 cmc2 other downstream 1032282 70615476 ~ 70621510 (+)

Expression


Co-expression Network