Gene
RNA
| Item | Value |
|---|---|
| gene id | mc1r |
| gene name | mc1r_par1 |
| gene type | coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048570.1 |
| NCBI id | CM023224.2 |
| chromosome length | 101096859 |
| location | 69590045 ~ 69591263 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| melanocortin 1 receptor |
| id | name | namespace |
|---|---|---|
| GO:0007186 | G protein-coupled receptor signaling pathway | biological_process |
| GO:0005886 | plasma membrane | cellular_component |
| GO:0016021 | integral component of membrane | cellular_component |
| GO:0004980 | melanocyte-stimulating hormone receptor activity | molecular_function |
| id | description |
|---|---|
| K04199 | MC1R; melanocortin 1 receptor |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| NM_001195178.1 | True | 1219 | mRNA | 0.52 | 1 | 69590045 | 69591263 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110526470 | LOC106587382 | coding | upstream | 6802 | 69552499 ~ 69583243 (+) |
| mvda | erg19 | coding | upstream | 39294 | 69541893 ~ 69550751 (+) |
| pdcd5 | LOC106587385 | coding | upstream | 50322 | 69531187 ~ 69539723 (+) |
| LOC110526467 | LOC106587383 | coding | upstream | 63396 | 69441369 ~ 69526649 (+) |
| LOC110526466 | LOC106587388 | coding | upstream | 167482 | 69387325 ~ 69422563 (+) |
| LOC110526471 | tbb3 | coding | downstream | 7890 | 69599153 ~ 69604659 (+) |
| LOC110526473 | LOC106587381 | coding | downstream | 19299 | 69610562 ~ 69642119 (+) |
| LOC110526472 | LOC106587380 | coding | downstream | 51012 | 69642275 ~ 69654389 (+) |
| trnav-cac-7 | NA | coding | downstream | 108802 | 69700065 ~ 69700137 (+) |
| gas8 | gas8 | coding | downstream | 109024 | 69700287 ~ 69708734 (+) |
| G539139 | NA | non-coding | upstream | 112706 | 69474348 ~ 69477339 (+) |
| G539138 | NA | non-coding | upstream | 118803 | 69469984 ~ 69471242 (+) |
| G539105 | NA | non-coding | upstream | 162258 | 69408748 ~ 69427787 (+) |
| G538993 | LOC106587389 | non-coding | upstream | 280065 | 69307979 ~ 69309980 (+) |
| G539213 | NA | non-coding | downstream | 67235 | 69658498 ~ 69660305 (+) |
| G539239 | NA | non-coding | downstream | 95685 | 69686948 ~ 69687800 (+) |
| G539258 | NA | non-coding | downstream | 128673 | 69719936 ~ 69720174 (+) |
| G539265 | NA | non-coding | downstream | 154200 | 69745463 ~ 69745782 (+) |
| G539272 | NA | non-coding | downstream | 166623 | 69757886 ~ 69758091 (+) |
| G539068 | NA | other | upstream | 222403 | 69361641 ~ 69367642 (+) |
| LOC110526955 | LOC106587395 | other | upstream | 578083 | 69007055 ~ 69018414 (+) |
| G538877 | LOC106582599 | other | upstream | 587217 | 68996083 ~ 69002828 (+) |
| G538859 | NA | other | upstream | 683198 | 68906045 ~ 68906847 (+) |
| G538607 | NA | other | upstream | 778155 | 68811119 ~ 68811890 (+) |
| G539959 | NA | other | downstream | 425079 | 70015270 ~ 70019477 (+) |
| LOC110525047 | psf2 | other | downstream | 444931 | 70036194 ~ 70039507 (+) |
| G540179 | NA | other | downstream | 890687 | 70481950 ~ 70484368 (+) |
| LOC110526485 | fam92b | other | downstream | 960532 | 70551763 ~ 70558098 (+) |
| cmc2 | cmc2 | other | downstream | 1024262 | 70615476 ~ 70621510 (+) |
