LOC110526471 (tbb3)


Basic Information

Item Value
gene id LOC110526471
gene name tbb3
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69599153 ~ 69604659 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607465.2
TACCCGTTTCGCCACACAGCAGACCTGCGCAAGATAAAACCTCTACTCAGCACATACCAATCCCTTTGCTTCAGTGTGCGACTGGGATCAGCGCTCTCTCCGACTCGCCCACAACAGTCAACTCGCCCACAAGAAAACGAACATAACACACAGAGGACAGGATGAGGGAAATAGTTCACCTTCAAGCCGGCCAGTGTGGCAACCAGATCGGAGCCAAGTTCTGGGAGGTGATCAGTGATGAACATGGCATCAGCCCTACAGGGAACTATGAGGGCGACTCCCCACTGCAGCTGGAGAGGATCAGTGTCTACTACAATGAGGCCTCGTCCTCTAAGTACGTCCCCAGGGCCATCCTAGTAGACCTGGAGCCAGGAACTATGGACAGTGTTCGCTCTGGGACCTACGGACAACTCTTCAGACCAGACAACTTCATCTTCGGTCAGAGTGGAGCTGGTAACAACTGGGCCAAGGGCCACTACACAGAGGGAGCAGAGCTGGTGGACTCAGTACTGGACGTAGTCAGGAAGGAATGTGAGAACTGTGACTGTCTCCAGGGCTTCCAGCTCACCCACTCCCTCGGAGGGGGCACAGGCTCTGGCATGGGGACCCTGCTCATCAGCAAGATCCGGGAAGAGTACCCTGACCGTATCATGAACACCTTCAGCGTGGTGCCCTCCCCTAAAGTATCAGACACAGTGGTGGAGCCCTACAATGCCACCCTGTCCATCCATCAGCTGCTGGAGAACACAGACGAAACCTACTGCATTGACAACGAGGCGCTTTATGACATCTGCTTCCGCACGCTCAAGCTCCCCACGCCCACCTACGGAGACCTCAACCACCTGGTGTCGGCCACCATGAGCGGTGTTACTACCTCCTTCCGCTTCCCCGGCCAGCTCAATGCTGACCTCCGCAAACTGGCTGTCAACATGGTGCCCTTCCCCCGTCTGCACTTCTTCATGCCTGGCTTCGCCCCCCTCACGGCGCGTGGCAGTGCGTGCTACAATGCACTGTCTGTGCCTGAGCTCACCCAGCAGTTGTTTGACGCCAAGAACATGATGGCCGCTTGCGACCCGCGTCACGGACGCTACCTGACCGTAGCCATGGTGTTCCGTGGTCAGATGTCCATGAAGGAGGTGGACGAACAGATGTTGGCCATCCAGAGTAAGAACAGCAGCTACTTTGTTGAATGGATCCCCAACAACGTCAAAGTGGCCGTCTGTAACATCCCGCCCCGCGGTCTCAAGATGTCCGCCACCTTCATCGGGAACAACACGGCCATCCAGGAGCTATTCAAGCGCATCTCTGAGCAGTTCACCGCCATGTTTCGCCGCAAGGCGTTCCTGCACTGGTATACCGGAGAGGGCATGGACGAGATGGAGTTCACCGAGGCAGAGAGCAACATGAACGACCTGGTGTCAGAGTACCAGCAGTACCAGGACGCCACCAccgaggaggagggagagatgtatgaagaggatgaggaagagtcAGAGAGCCAGGCCCGGTGAACACCTTGGAAGAAGAGCCAAGCTTGTGGAAACCCAGCCGACAGCGCTTTGTCTATGTGTAGCAGGGTTGTTATCTGCCTCATGTACACTGTACTGTATAACCCGCCCTCCCTATACCCCTCCCTGCTCTCACTGTCTTTGCTAACTGTTAGCCCCAATTCTCTTAGCCCTCTGACCAACTCATGGCCTCCTGTTGATTTATCCTGTTGATAAAAACCTCCCAGACAGACCACTAAGTTGAATGGGTGAAATAAAGTGTCTCATAAACTGATGACGAATATCCCTTAATTTCTTATAATAAACATGTTCAAGCCTA

Function

NR:

description
tubulin beta-3 chain-like

GO:

id name namespace
GO:0007017 microtubule-based process biological_process
GO:0051258 protein polymerization biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005874 microtubule cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0005200 structural constituent of cytoskeleton molecular_function

KEGG:

id description
K07375 TUBB; tubulin beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607465.2 True 1827 mRNA 0.55 4 69599153 69604659

Neighbor

gene id symbol gene type direction distance location
mc1r mc1r_par1 coding upstream 7890 69590045 ~ 69591263 (+)
LOC110526470 LOC106587382 coding upstream 15910 69552499 ~ 69583243 (+)
mvda erg19 coding upstream 48402 69541893 ~ 69550751 (+)
pdcd5 LOC106587385 coding upstream 59430 69531187 ~ 69539723 (+)
LOC110526467 LOC106587383 coding upstream 72504 69441369 ~ 69526649 (+)
LOC110526473 LOC106587381 coding downstream 5903 69610562 ~ 69642119 (+)
LOC110526472 LOC106587380 coding downstream 37616 69642275 ~ 69654389 (+)
trnav-cac-7 NA coding downstream 95406 69700065 ~ 69700137 (+)
gas8 gas8 coding downstream 95628 69700287 ~ 69708734 (+)
LOC110526477 mthfsd coding downstream 119839 69724498 ~ 69732656 (+)
G539139 NA non-coding upstream 121814 69474348 ~ 69477339 (+)
G539138 NA non-coding upstream 127911 69469984 ~ 69471242 (+)
G539105 NA non-coding upstream 171366 69408748 ~ 69427787 (+)
G538993 LOC106587389 non-coding upstream 289173 69307979 ~ 69309980 (+)
G539213 NA non-coding downstream 53839 69658498 ~ 69660305 (+)
G539239 NA non-coding downstream 82289 69686948 ~ 69687800 (+)
G539258 NA non-coding downstream 115277 69719936 ~ 69720174 (+)
G539265 NA non-coding downstream 140804 69745463 ~ 69745782 (+)
G539272 NA non-coding downstream 153227 69757886 ~ 69758091 (+)
G539068 NA other upstream 231511 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 587191 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 596325 68996083 ~ 69002828 (+)
G538859 NA other upstream 692306 68906045 ~ 68906847 (+)
G538607 NA other upstream 787263 68811119 ~ 68811890 (+)
G539959 NA other downstream 411683 70015270 ~ 70019477 (+)
LOC110525047 psf2 other downstream 431535 70036194 ~ 70039507 (+)
G540179 NA other downstream 877291 70481950 ~ 70484368 (+)
LOC110526485 fam92b other downstream 947136 70551763 ~ 70558098 (+)
cmc2 cmc2 other downstream 1010866 70615476 ~ 70621510 (+)

Expression


Co-expression Network