LOC110526472 (LOC106587380)


Basic Information

Item Value
gene id LOC110526472
gene name LOC106587380
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69642275 ~ 69654389 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_036980856.1
GGGATTGTTTCTATCTGATCGTAGTGGAAAATGTGACCACTGAATGAGGGGATTCAATTATCTggcccggtgggaggagtttgTTTAGGTGTGCGTTCGTTTGCCCCCGACCTCAGTGATTCAAAGCCCACGGCTCCAAAGAAAAGTGACATAGCCCAGGCTAGATCAAACACGTGGGGTAAAGAGTAGGATTCGGTATTTTCACATGCAGAAgtgatttatttttataaaaacgCTTTATCTGCATTCCCAtcccagggtagcctagtggttagagcattcgACTAGTaaacggaaggttgcaagttccaacccccgagctgacaaggtacaaatctgtcgttctgcccctgaacaggcagttaacccactgttcctaggccgtcattgaaaataagaatttgttcttaactgacttgcctagttaaataaatgtaaaataaattttaaaaactaGTTAGAAAATTCTAACATATATTTTATAGACAGGATATGTAAATGTATAGACCTTGCTGCCTTGTTGGCAACCTTGCAGAATATTGTAAGGTTTGAGAAGGGCGCTCCTTCGCCGCTTTTGCTCGTTACGTCACGGGCCATTGACAGGTGCACCGCGGCTCAGGTTAATAGAACTCCCTCATTTTCATAAACGTCACTTGTTGTTATCGTTCCACGCATATTGACCAATCGCAAAGCAGCAGTCCGGTCTTTCGAAGGACCCGATGAGGTCGTGGCTAGTTTTAAACTGTTGAGGCTCGGGAGTCGATCGACCCCAACAGCGGGGACACTCTGCCTGCTCCAGCCGAAGTATGGTTCACATGATGGGGCTGCTTTCAGTGAGTGTTGTGCCCCTGCGGAACGGGGTGCAGGCTTGGGGCAGAGGCTGCGCCACCATCCACGCAGCTTTTCGCTACAGTAACTTTAGCTCATTATCGAAGTGTTCTGCATTAAAACGAATCAATCCCATGGGATTAAATCAATGCACTTTCACATTGGCTCGATTGCTCAGTTCCAAACCCCCACGAGGATTTGAGAAGTTCTTCCCAAAGAGTGAGGACACTCCTGGAGTGAACAAGTCATCTGAAGAGACCGGAGATGAGAAGACCAAAGAGACAGAATCTCAGGGCGGAGGAGAAGAGGGACAAAATGaaagtggtgagagagagaggaggagaggcggaaggaaggatgaatcagactggtGGACACGCTTCCAGAATGATTTCCCCTGGGATGAGAAGACCACGCGCAATGTCGCGATCGGATTCGCCGGCATGGCCTCTGCGTTCCTGTATTTCTACTTCCGAGAGACTGGGAAGGAAGTCTCCTGGAAGGACTTTATAAATAACTACCTGGCTAGAGGACTGGTGGACCGTCTGGAGGTAGTCAACAAACAGTATGTCAGAGTCATCCCAGTGCATGGAGTCAACACATCAGAGGTGAGCTACCTGTGGTTCAACATCGGCAGCGTGGAGACGTTTGAACGCAACCTGGAGCTGGCCCAGCAGGAGATGGGCctggactctacacacagagTACCGGTGATCTATGGAAGCGAGAGCGACGGTACTTTCCTGATGAGCATTCTTCCAACCCTCTTGCTGGTTGGCTTCCTGCTCTTCACCATGCGCCAGGGACCAATGGCAGGAGGCCGTGGCGGGGGGCGGGGCAACCCCTTCAGCATGGGGGAATCCAAGGCCAAGGTCATGAAGGACAACATTGATGTGAGATTTAAGGATGTGGCGGGCTGTGAAGAGGCCAAGCTGGAGATCCTAGAGTTTGTCAACTTCCTGAAGAACCCCCGGCAGTACCAGGACCTGGGGGCCAAGATTCCCAAGGGTGCAGTGTTGTCGGGTCCCCCCGGCACAGGGAAGACCCTGCTAGCCAAGGCCACAGCCGGAGAGGCCAATGTCCCCTTCATCACCGTCAACGGCTCTGAGTTCCAGGAGATGTTTGTTGGCGTGGGTCCAGCCAGGGTGAGGGATATGTTTGCCATGGCCCGTAAGAACGCTCCCTGCATCCTGTTCATCGATGAGATAGATGCCGTGGGcaggaagagaggcagagggaacTTTGGGGGACAGAGTGAGCAGGAGAACACACTCAACCAGCTGCTAGTGGAGATGGATGGGTTCAACACCAGCACTAACGTGGTCGTCTTGGCTGGAACCAACCGaccagacatcctggacccagcaCTGATGAGACCTGGGCGCTTCGACAGACAGATTTACATAGgTCCACCAGACATAAAAGGCAGAGCATCCATCTTTCAGGTCCATCTGAGGCCTCTGAAGCTGGACTCCAGTATAGACTCTGAAGCTTTGGCCAGGAAACTAGCTGCCCTCACACCTGGCTTCACTGGAGCTGATATTGCCAACGTGTGTAATGAGGCGGCCCTGATAGCAGCACGCTACCTTAACGAGTCTATCATCGTCAAGCACTTTGAGCAGGCCATCGAGAGGGTCATCGGAGGTCTGGAGAAGAAGACCCAGGTACTACAGCCATTAGAGAAGACCACTGTAGCATACCACGAGGCTGGCCATGCTGTGGTGGGCTGGTACCTGGAACATGCTGACCCTCTGCTCAAGGTGTCAATCATCCCCCGGGGGAAGGGTTTGGGGTATGCTCAGTACCTCCCTAAGGAGCAGTACCTCTTCACGCGGGAGCAGCTGTTTGACAGGATGTGTATGATGCTGGGGGGACGTGTGGCAGAGCAGGTCTTTTTTGGGAAGATCACCACAGGGGCACAGGATGACCTCCGGAAGGTCACGCAGTCTGCCTACGCACAGGTGGTTCAGTTTGGGATGAGTGAGGTGGTGGGCCAGGTGTCTTTTGAGCTCCCCAGGCAGGGAGAGATGTTGATGGAGAAGCCTTACAGCGAGCCCACGGCCCAGCTCATAGACCAGGAGGTCCGCTCACTCATAGACGCTGCCTTCCAACGCACACACCAGCTCATCACTGAGAAGAGAGATGTGGTGGAGAAgGTGGGGAGGCGTCTCCTGGAGAAGGAGGTTCTGGACAGGGCTGATATGCTGGAGTTGCTGGGTCCTCGCCCCTACAAGGAGAAGTCTACGTATGAGGAGTTTGTGGAGGGGACGGGGCCCATGAAGGAGGACACCTCCCTTCCAGAGGGCCTCAAGAACTGGAACAAGGACCGGGGGACGGAAGAGCCTCCCCAGGAGCAGCAACGCAAGCAGGCTCTTTACCTGTAGACAGACACCACGTCTGACCTGGCCCCCACCCAACCAGGCCACTGGAGGAACATGTTGAGACTTAATTTGGTGAGGGGAGGGCACTTGACATGACCCAGACAGACTGATATCAAGAGAGGGTGTCAGGTTTAAGAAGGCACCCCTGCACCGTGTCCCTGATGGCTACAGATTGAGGGTTGTGGGGTGCAGCAGGGGATCTGCTCCAACAGCCTAGATTGTGCCAATTCTCATGTAGActttttttaaaatctgtttGGGAATGCAAAAAGGTGTTCCTGCATTTTGGTTTTGCAGGGCATGAGATTCATCAATCTGTGAAGGATATCCACTCCTCCACCATGCTGTTCATTTCCTTCCCTGGAGATTCCCTGCTGCACTATGTTCCTCCTTTGTCCTGACCACAGTGCATTCCAGGGCTGGTGTGGTCATTCTAAGGCCCTAGAGACCATGGTCGTCACAGGGAACATATATTGTTTTAATAGTTGTGTAGTATTCATTATTTTACCTTTTTCATTGTGTGTTGGATGAGTTTGTCTGACATGCAACATTTTTATGAATATATGATCATGTACATCAGGGATGGGTGACTGTCGGTGGCCATTTTGAAAGCCCTTGGATAAATCCCCCCCCAACTTACTGTTGTGAGTtaaaatacacaaggtgcaatttctacATTTGGTTGCACATCCGTTTTTCTGTTATGTTAGTCAATTAGcaattttattgatgtatttttaTGATATAGGAATGCAGATCTGTGAgcaactgcggcccctcatgatgagttcagttTTTTGTGGACCCCACCCCCATCAATACTACCCATCCCTGATGTACATCTCATTTGAAGTGAGATGTTTTCTTTTAGATTTCATATTGGAACATGAAGggctatgtgagtgtgtgtgttgcaccATTGTAATAATTTGGTTGGTGCTAATTTGTCCtctttcacacatgtacaagtgtatATTAATACCGTGTGTGATTTggacagccagggtctgccattatcaacggcGACCCTGGaggtaagtgccttgctcaagggcacattgacagatttggttttcaccttgttggctctGGGTTCTAGCAACCTTTAACTAGCAACCTTTTaagttactgtcccaacgctctatccgctaggctacctgccgagcTACGTATAATCCTCAACGTTTTTGCTACCTTCTGACCTTATTGAATTTCAGCGACGTGTTCATGTTCCCATGTCTCTCTTCAGTCATTGACACTTGTTAACTAAACAGCCATGTGATTGCAGAGGGTTTTCAGAAAGCTCAGCAGAAATCCAGTCCATGCAGAGCAGACTGTAACACTGGGACAGTATGACATTTACATTGTATTTTATCCTCTTTCTGGTTGAGGTTCAAACTGTTAGTAGGCCTAATTGAAGAAAAACACGTCTTCTGAATGTCACTTCAGTCTTTTGCAAAAAACAACCGCCACTCCTCTACCTGCCCACTTTTCCCCACAGGAAAACAGCTTCTGACAAGTTTTATTTCTGAGTACAACTAGTGTACACTACCTCACCTCTTATGCTCTCTGTGTTGCTATAAGTCAACTGACAACAGATGAACTTCACACGTCTTTTGTGAAGTATTGAGatacatacactactgttcaaacatttgggatcacttagaaatgtccttgtttttgaaagaaaataacatttttgtccatttaaattaacataaaattgatcagaaatacagtgtagacattgttaatgttgtaaattactatt
>XM_036980857.1
CGTCAACTTGCAAAAGAACCATGTCATGCTATCACACAACATTGATTACAGATATGCAATATATTTAAAAATGCATGATTAAGCCTTGTTTGCCTATGCTTGATTAACTTTGTCATAAAGAGTTTATTGCACAAAGATCCCGTCCTTGCTTATGAAACATTTTTCCCCTCATTCACTTCATAACATGTAGAGTTGCTGCGTCCTGTGGGGAAGGGGGCGTCTCAGCTGCAGCAAATTGTGGGTCATGGCTAGAAGCGATCACTTCAGTTTTGATCAAATTAACGTCAGATTTGATTTTTCGTATCAGGTTAGGATAATTTactcagcagTGTTCTGCATTAAAACGAATCAATCCCATGGGATTAAATCAATGCACTTTCACATTGGCTCGATTGCTCAGTTCCAAACCCCCACGAGGATTTGAGAAGTTCTTCCCAAAGAGTGAGGACACTCCTGGAGTGAACAAGTCATCTGAAGAGACCGGAGATGAGAAGACCAAAGAGACAGAATCTCAGGGCGGAGGAGAAGAGGGACAAAATGaaagtggtgagagagagaggaggagaggcggaaggaaggatgaatcagactggtGGACACGCTTCCAGAATGATTTCCCCTGGGATGAGAAGACCACGCGCAATGTCGCGATCGGATTCGCCGGCATGGCCTCTGCGTTCCTGTATTTCTACTTCCGAGAGACTGGGAAGGAAGTCTCCTGGAAGGACTTTATAAATAACTACCTGGCTAGAGGACTGGTGGACCGTCTGGAGGTAGTCAACAAACAGTATGTCAGAGTCATCCCAGTGCATGGAGTCAACACATCAGAGGTGAGCTACCTGTGGTTCAACATCGGCAGCGTGGAGACGTTTGAACGCAACCTGGAGCTGGCCCAGCAGGAGATGGGCctggactctacacacagagTACCGGTGATCTATGGAAGCGAGAGCGACGGTACTTTCCTGATGAGCATTCTTCCAACCCTCTTGCTGGTTGGCTTCCTGCTCTTCACCATGCGCCAGGGACCAATGGCAGGAGGCCGTGGCGGGGGGCGGGGCAACCCCTTCAGCATGGGGGAATCCAAGGCCAAGGTCATGAAGGACAACATTGATGTGAGATTTAAGGATGTGGCGGGCTGTGAAGAGGCCAAGCTGGAGATCCTAGAGTTTGTCAACTTCCTGAAGAACCCCCGGCAGTACCAGGACCTGGGGGCCAAGATTCCCAAGGGTGCAGTGTTGTCGGGTCCCCCCGGCACAGGGAAGACCCTGCTAGCCAAGGCCACAGCCGGAGAGGCCAATGTCCCCTTCATCACCGTCAACGGCTCTGAGTTCCAGGAGATGTTTGTTGGCGTGGGTCCAGCCAGGGTGAGGGATATGTTTGCCATGGCCCGTAAGAACGCTCCCTGCATCCTGTTCATCGATGAGATAGATGCCGTGGGcaggaagagaggcagagggaacTTTGGGGGACAGAGTGAGCAGGAGAACACACTCAACCAGCTGCTAGTGGAGATGGATGGGTTCAACACCAGCACTAACGTGGTCGTCTTGGCTGGAACCAACCGaccagacatcctggacccagcaCTGATGAGACCTGGGCGCTTCGACAGACAGATTTACATAGgTCCACCAGACATAAAAGGCAGAGCATCCATCTTTCAGGTCCATCTGAGGCCTCTGAAGCTGGACTCCAGTATAGACTCTGAAGCTTTGGCCAGGAAACTAGCTGCCCTCACACCTGGCTTCACTGGAGCTGATATTGCCAACGTGTGTAATGAGGCGGCCCTGATAGCAGCACGCTACCTTAACGAGTCTATCATCGTCAAGCACTTTGAGCAGGCCATCGAGAGGGTCATCGGAGGTCTGGAGAAGAAGACCCAGGTACTACAGCCATTAGAGAAGACCACTGTAGCATACCACGAGGCTGGCCATGCTGTGGTGGGCTGGTACCTGGAACATGCTGACCCTCTGCTCAAGGTGTCAATCATCCCCCGGGGGAAGGGTTTGGGGTATGCTCAGTACCTCCCTAAGGAGCAGTACCTCTTCACGCGGGAGCAGCTGTTTGACAGGATGTGTATGATGCTGGGGGGACGTGTGGCAGAGCAGGTCTTTTTTGGGAAGATCACCACAGGGGCACAGGATGACCTCCGGAAGGTCACGCAGTCTGCCTACGCACAGGTGGTTCAGTTTGGGATGAGTGAGGTGGTGGGCCAGGTGTCTTTTGAGCTCCCCAGGCAGGGAGAGATGTTGATGGAGAAGCCTTACAGCGAGCCCACGGCCCAGCTCATAGACCAGGAGGTCCGCTCACTCATAGACGCTGCCTTCCAACGCACACACCAGCTCATCACTGAGAAGAGAGATGTGGTGGAGAAgGTGGGGAGGCGTCTCCTGGAGAAGGAGGTTCTGGACAGGGCTGATATGCTGGAGTTGCTGGGTCCTCGCCCCTACAAGGAGAAGTCTACGTATGAGGAGTTTGTGGAGGGGACGGGGCCCATGAAGGAGGACACCTCCCTTCCAGAGGGCCTCAAGAACTGGAACAAGGACCGGGGGACGGAAGAGCCTCCCCAGGAGCAGCAACGCAAGCAGGCTCTTTACCTGTAGACAGACACCACGTCTGACCTGGCCCCCACCCAACCAGGCCACTGGAGGAACATGTTGAGACTTAATTTGGTGAGGGGAGGGCACTTGACATGACCCAGACAGACTGATATCAAGAGAGGGTGTCAGGTTTAAGAAGGCACCCCTGCACCGTGTCCCTGATGGCTACAGATTGAGGGTTGTGGGGTGCAGCAGGGGATCTGCTCCAACAGCCTAGATTGTGCCAATTCTCATGTAGActttttttaaaatctgtttGGGAATGCAAAAAGGTGTTCCTGCATTTTGGTTTTGCAGGGCATGAGATTCATCAATCTGTGAAGGATATCCACTCCTCCACCATGCTGTTCATTTCCTTCCCTGGAGATTCCCTGCTGCACTATGTTCCTCCTTTGTCCTGACCACAGTGCATTCCAGGGCTGGTGTGGTCATTCTAAGGCCCTAGAGACCATGGTCGTCACAGGGAACATATATTGTTTTAATAGTTGTGTAGTATTCATTATTTTACCTTTTTCATTGTGTGTTGGATGAGTTTGTCTGACATGCAACATTTTTATGAATATATGATCATGTACATCAGGGATGGGTGACTGTCGGTGGCCATTTTGAAAGCCCTTGGATAAATCCCCCCCCAACTTACTGTTGTGAGTtaaaatacacaaggtgcaatttctacATTTGGTTGCACATCCGTTTTTCTGTTATGTTAGTCAATTAGcaattttattgatgtatttttaTGATATAGGAATGCAGATCTGTGAgcaactgcggcccctcatgatgagttcagttTTTTGTGGACCCCACCCCCATCAATACTACCCATCCCTGATGTACATCTCATTTGAAGTGAGATGTTTTCTTTTAGATTTCATATTGGAACATGAAGggctatgtgagtgtgtgtgttgcaccATTGTAATAATTTGGTTGGTGCTAATTTGTCCtctttcacacatgtacaagtgtatATTAATACCGTGTGTGATTTggacagccagggtctgccattatcaacggcGACCCTGGaggtaagtgccttgctcaagggcacattgacagatttggttttcaccttgttggctctGGGTTCTAGCAACCTTTAACTAGCAACCTTTTaagttactgtcccaacgctctatccgctaggctacctgccgagcTACGTATAATCCTCAACGTTTTTGCTACCTTCTGACCTTATTGAATTTCAGCGACGTGTTCATGTTCCCATGTCTCTCTTCAGTCATTGACACTTGTTAACTAAACAGCCATGTGATTGCAGAGGGTTTTCAGAAAGCTCAGCAGAAATCCAGTCCATGCAGAGCAGACTGTAACACTGGGACAGTATGACATTTACATTGTATTTTATCCTCTTTCTGGTTGAGGTTCAAACTGTTAGTAGGCCTAATTGAAGAAAAACACGTCTTCTGAATGTCACTTCAGTCTTTTGCAAAAAACAACCGCCACTCCTCTACCTGCCCACTTTTCCCCACAGGAAAACAGCTTCTGACAAGTTTTATTTCTGAGTACAACTAGTGTACACTACCTCACCTCTTATGCTCTCTGTGTTGCTATAAGTCAACTGACAACAGATGAACTTCACACGTCTTTTGTGAAGTATTGAGatacatacactactgttcaaacatttgggatcacttagaaatgtccttgtttttgaaagaaaataacatttttgtccatttaaattaacataaaattgatcagaaatacagtgtagacattgttaatgttgtaaattactatt

Function

NR:

description
AFG3-like protein 1

GO: NA

KEGG:

id description
K08956 AFG3; AFG3 family protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_036980856.1 False 4983 mRNA 0.49 18 69642275 69654389
XM_036980857.1 True 4377 mRNA 0.49 17 69643441 69654389

Neighbor

gene id symbol gene type direction distance location
LOC110526473 LOC106587381 coding upstream 156 69610562 ~ 69642119 (+)
LOC110526471 tbb3 coding upstream 37616 69599153 ~ 69604659 (+)
mc1r mc1r_par1 coding upstream 51012 69590045 ~ 69591263 (+)
LOC110526470 LOC106587382 coding upstream 59032 69552499 ~ 69583243 (+)
mvda erg19 coding upstream 91524 69541893 ~ 69550751 (+)
trnav-cac-7 NA coding downstream 45676 69700065 ~ 69700137 (+)
gas8 gas8 coding downstream 45898 69700287 ~ 69708734 (+)
LOC110526477 mthfsd coding downstream 70109 69724498 ~ 69732656 (+)
LOC118964926 NA coding downstream 85230 69739619 ~ 69756833 (+)
emc8 LOC106587369 coding downstream 371773 70026162 ~ 70028929 (+)
G539139 NA non-coding upstream 164936 69474348 ~ 69477339 (+)
G539138 NA non-coding upstream 171033 69469984 ~ 69471242 (+)
G539105 NA non-coding upstream 214488 69408748 ~ 69427787 (+)
G538993 LOC106587389 non-coding upstream 332295 69307979 ~ 69309980 (+)
G539213 NA non-coding downstream 4109 69658498 ~ 69660305 (+)
G539239 NA non-coding downstream 32559 69686948 ~ 69687800 (+)
G539258 NA non-coding downstream 65547 69719936 ~ 69720174 (+)
G539265 NA non-coding downstream 91074 69745463 ~ 69745782 (+)
G539272 NA non-coding downstream 103497 69757886 ~ 69758091 (+)
G539068 NA other upstream 274633 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 630313 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 639447 68996083 ~ 69002828 (+)
G538859 NA other upstream 735428 68906045 ~ 68906847 (+)
G538607 NA other upstream 830385 68811119 ~ 68811890 (+)
G539959 NA other downstream 361953 70015270 ~ 70019477 (+)
LOC110525047 psf2 other downstream 381805 70036194 ~ 70039507 (+)
G540179 NA other downstream 827561 70481950 ~ 70484368 (+)
LOC110526485 fam92b other downstream 897406 70551763 ~ 70558098 (+)
cmc2 cmc2 other downstream 961136 70615476 ~ 70621510 (+)

Expression


Co-expression Network