gas8 (gas8)


Basic Information

Item Value
gene id gas8
gene name gas8
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69700287 ~ 69708734 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607473.2
AGTCTCGCGAGATATTCATCAACGTTGCCATGACGACACGTTGTTGTAGTTCGAGCTATCACAGATGGGTAGGCAGCGTGCTAGCTGTTTACTTTTTCAAAGATAGTCCCTTTTCAGCTATATCTGTGCGTGGTAGCAGTATTTCAGAATGCCACCCAAAAAGAAGGCCGCAGCCAAGTCTGCCAAAGGGAAGACGCCCACAGTAGTAGATGGCCTTTCCACGGAGGAGATGTCGAAGGAGCAGCTGGAGGAGCACATTGTGCGGCTGCGGGAGGAgctggacagggagagggaggagaggaactaCTTCCAGCTGGAGAGGGACAAGATCCACACCTTCTGGGAGATCACCAAGAGACATCTGGACGAGAGGAAGGCAGACCTGAGGAACAGAGACCGGGAGATGGAAGAGGCTGAGGAGCGCCACCAAGTAGAGatcaagGTGTACAAGCAGAAAGTGAAGCATCTGCTGTATGAGCACCAGAACAGCATCTCAGAGCTGAAGGGAGAGGGCGTGGTCTCTAACAAGCTGATGCAGAAAGAGCACGCCGAGCTGGAGAACGAGCTCTGCAAGGGCATGCGTACCCTCAAAGTGGACATTAAGGAGCAGGAGCTCTCCAACGAGAACCTCGTCAAGGGCCTCAAACTGAAAAACGACCAGGAAATTACCAAAACGAGAAATGACTTTGAGAGACAAGTGCGAGAAATTGAGGCCAAGTATGAGAAGAAGATGCAGATGCTGCGTCAGGAGCAGGAcctgaggaggaagacagagatccACGAGATCGAGGAGAGGAAGAACAGCCAGATCAACACGCTGATGAAGAACCACGAGAAGGCTTTCAGCGACATCAAGAACTACTACAATGACATCACCCTCAACAACCTGGCCCTCATCAACTCACTCAAGgaaCAAATGGAGGAGATGAAGAGGAAGGAGGAGCGTCTGGAGAAGGACATGGCAGAGGTGCTGCTGCAGAACAAGCGCCTGACGGAGCCCCTGCAGAGGGCCAAGGAGGAGGTGACCGAGCTGCAGAAACAACTGGCCAACTACGAGAAGGACAAGACCTCACTGGCGGGGGCCAAAGCACATCTGAAGGTCGCAGGCAAGGAGATGAAAGACCTGAAGTGGGAACACGAAGTGCTGGAACAGAGGTTTAGTAAGGTCCAGGTGGAGCGTGATGACCTGTATAAGAAGTTCACCCAGGCCATCCAGGAAGTGCAGCAGAAGAGTGGCTTTAAGAACCTCCTGTTGGAGAGGAAACTGGGGGCTCTGACCAACACCCTGGAGAAGAAGGAGGCTCAGCTCAACGAGGTGCTGTCTGCCTCCAACTTGGACCACACCGCCCTCGGCGTGGTCACACGCAAACTGGAGGAAGTTTTGGACTCCAAGAACATTGCGATCAAAGACTTGCAGTATGAGTTGGCGCGGGTTTGTAAGGCCCATAATGACCTGCTGAGAACCTATGAGGCCAAGCTGCAGGCCTTTGGGATCCCTATGGAGGAGCTGGGCTTCAAGCCCCTGGAGAGCAGTGTGGCTGGACACTCCCTGGGCCAGGGCCCTGCAGGGCTGGTGTCTGTCCCCACATGAGAGGCTCCCAGGCTGGGCTCAGAGACACAAATACTCCCTGACCCACACAGACTATCACTTACTGCAGTGCTAATGTGACTCTTctttctatctcactctctctttattgtaacgtTTGATAGTTGCTGTTGATCTTCAGTAGTATTTCTATCTGTTTGCGAAGAGGAACTTGTCTTTTTCCAATACACTGTAAACATTtccaaataaatatattttaaaaagta

Function

symbol description
gas8 Predicted to enable microtubule binding activity. Involved in cilium movement involved in otolith formation and otolith tethering. Acts upstream of or within muscle cell development and positive regulation of smoothened signaling pathway. Predicted to be located in ciliary basal body and cytoplasm. Predicted to be active in Golgi apparatus and microtubule. Is expressed in neural tube; otic placode; otic vesicle; and pronephric duct. Human ortholog(s) of this gene implicated in primary ciliary dyskinesia 33. Orthologous to human GAS8 (growth arrest specific 8).

NR:

description
growth arrest-specific protein 8

GO:

id name namespace
GO:0055001 muscle cell development biological_process
GO:0048870 cell motility biological_process
GO:0045880 positive regulation of smoothened signaling pathway biological_process
GO:0031514 motile cilium cellular_component

KEGG:

id description
K19942 GAS8; growth arrest-specific protein 8

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607473.2 True 1815 mRNA 0.52 11 69700287 69708734

Neighbor

gene id symbol gene type direction distance location
trnav-cac-7 NA coding upstream 150 69700065 ~ 69700137 (+)
LOC110526472 LOC106587380 coding upstream 45898 69642275 ~ 69654389 (+)
LOC110526473 LOC106587381 coding upstream 58168 69610562 ~ 69642119 (+)
LOC110526471 tbb3 coding upstream 95628 69599153 ~ 69604659 (+)
mc1r mc1r_par1 coding upstream 109024 69590045 ~ 69591263 (+)
LOC110526477 mthfsd coding downstream 15764 69724498 ~ 69732656 (+)
LOC118964926 NA coding downstream 30885 69739619 ~ 69756833 (+)
emc8 LOC106587369 coding downstream 317428 70026162 ~ 70028929 (+)
LOC110525047 psf2 coding downstream 328254 70036194 ~ 70039507 (+)
LOC110526484 LOC106587367 coding downstream 340416 70049150 ~ 70058063 (+)
G539239 NA non-coding upstream 12487 69686948 ~ 69687800 (+)
G539213 NA non-coding upstream 39982 69658498 ~ 69660305 (+)
mvda erg19 non-coding upstream 149567 69541893 ~ 69550751 (+)
G539139 NA non-coding upstream 222948 69474348 ~ 69477339 (+)
G539138 NA non-coding upstream 229045 69469984 ~ 69471242 (+)
G539258 NA non-coding downstream 11202 69719936 ~ 69720174 (+)
G539265 NA non-coding downstream 36729 69745463 ~ 69745782 (+)
G539272 NA non-coding downstream 49152 69757886 ~ 69758091 (+)
G539278 NA non-coding downstream 53811 69762545 ~ 69762761 (+)
G539783 NA non-coding downstream 71450 69780184 ~ 69780410 (+)
G539068 NA other upstream 332645 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 688325 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 697459 68996083 ~ 69002828 (+)
G538859 NA other upstream 793440 68906045 ~ 68906847 (+)
G538607 NA other upstream 888397 68811119 ~ 68811890 (+)
G539959 NA other downstream 307608 70015270 ~ 70019477 (+)
G540179 NA other downstream 773216 70481950 ~ 70484368 (+)
LOC110526485 fam92b other downstream 843061 70551763 ~ 70558098 (+)
cmc2 cmc2 other downstream 906791 70615476 ~ 70621510 (+)

Expression


Co-expression Network