LOC110526477 (mthfsd)


Basic Information

Item Value
gene id LOC110526477
gene name mthfsd
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69724498 ~ 69732656 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607476.2
TGGTCTTTCCGAGCTACCATACAGAAAAAAACATCCCTGACAAGCAGCTGTTGCTACAATGTTACAGAACTCCCACGTGCGCAAATCAATCTGTGGTCACTTTGTGATAGTTTGACTAATCGTCAGTGATTTGTGAGAATTTTCTACATCTTCGACGAGAGGAAAATGGAGGCCGTTATTACGATTAATCCCGGGGCCACGAAATGGGACATCCGAGAGAAAGTTTGGGATTACATTGAAGCTAAGAATCTTGCAAACTTTCCAAGGCCTGTGCACAACAGAATCCCCAATTTTAAGGGTGCGGTCCCGGCCTGTGACCGTCTCTCAGCCCTGCAGGAGTTCAAGTCCAGCCAGACGGTCAAAGTGAACCCGGACCGACCCCAGCAGCAGGCACGCTACATCACCCTGGATGCGAGGAAAACCCTGCTGGTGCCGACCCCTCGCCTTCGCACAGGACTCTTCAATAAGATTGTCCCGCCTGAGGGAGCAAGCAAAGAAGAACTGAGAGTGTGCTCCACCTCGCAGGGAGTGAAGGAGTTCAGCGTCCCTGTGGGTCTGGATTCCAACGTTCAGGTGGATCTTCTGGTGGTTGGCTCTGTGGCCGTGTCTGAGAAAGgTTACCGGATAGGTAAAGGAGAGGGCTTTGCTGACATGGAGTATGCCATGATGCTCTGCATGGGGGCTGTGACCGAATCCACTGTGGTGGTTACCATCGTCCATGACTGCCAGGTTGTTGACATCCCAGAGGATCTGATTGAGAGCCATGATATCACTGTGGACTACATCCTCACCCCGACCAGAGTCATCAAGACAGACTGCCAACGCCCCAAGCCCCAGGGCATCATCTGGACTAAGCTGAACGCTGAGATGCTGGAGAAGATCCCCGTGCTGAAGAAGCTCCGGGCCTTGGAGGAGGAGCAAGGGAAGGACGTGACCCTGGGGACCCACCCTCCCCCGCAGCCCAGGGAGAGGGCCAGGAGGGCGCCCCGGAGGGACAGAGAGCCCAGGTCAGAGGGTGATAGACCCCGGCGTGAGCCCAGGCGCAGGCCTAGACGGGACACCCAAGAGGACTCTGAGAGGGACCCCAACGGGGAGTCCAGAGAGGAGACTGAGCAGAAACCCAGACGACGCCCACCaagagtgaggagggaggggggtagagaggggggtagggatggtgatggggagggggagggaggccaggagggaggcagagaggggggtaGGAGGGTCAGGGGATTCCGCAATGGGGGCTTCCGTGAGGGGGGCAGAGATGGAAGTagggggagaggcagaggaggaggccGGGAGGGGGccagggggaggggaagagaggtggacAGGGATGGGGTCAGGCAAGAGGGCAGGGAGGAAGGTGGTGAGCCCCGTGAGCGCAGGCCCCCCCTAACTGTGACCACAGTGTACCTGGGGGGCATCCCTGCCGGGCTGCGTGTCAGCGAGCTGAAGACTGCTCTCCGGGAGAGGGAGGCAGCCCCCATCCGTCTCACGTGGCAGGGTGCTCAGCACCGGGCCTTCCTGGACTACTTAGACCCCCAGGCTGCAGACCAGGCCCTGGCCGCCCTGGAGGGGCTCTCCCTGAACGGCCATGACCTGCAGGCTGAGCTGGCCAAGAGCCAGAGGGGAGGCAGGAGGCCAGGTCCAAGCAACCGGAGGCCCAGACCAAATACAGGCCCCAAAAATACAGctagagaaagtagagagagtaCGAGTGAACCAGAGGCAGATTCCCCCAAGCAGGAGCTCAACCATAACGAGTAACTGTCTGCTTCTATGTCCATCTCTGTACAGAAGCCAAGCCAGCAGAAAGAAAAGGCTGTGGTTCATGAAAGGGAAGGATGATACCTTCACTGTACCAATGTGAAGTGTGAAAATATGTTTAATGCCTTAAGCAGAGTTTGGTTTGTCGTTATGGTTTTTAGTGTTGGTATTGATAACACGTAACCCCATTTACGTTTGAAATGTTCTTATACGGAAGTTTCATCCACACTGGCAGGCCTGTCTGTCAGTCACAAAGGAAGGAGAGGTTGGAGGTTTCCCTGTTAGTCTCTTTGTGCAGGGGCAATGTTTAATGCCCTACATGTAATGCCATCGGAATTCACAGGATATTTTGTGTACTAAATAAACCATACTTTGAGTTCATAGTTTTAA
>XM_021607474.2
GGTCTTTCCGAGCTACCATACAGAAAAAAACATCCCTGACAAGCAGCTGTTGCTACAATGTTACAGAACTCCCACGTGCGCAAATCAATCTGTGGTCACTTTGTGATAGTTTGACTAATCGTCAGTGATTTGTGAGAATTTTCTACATCTTCGACGAGAGGAAAATGGAGGCCGTTATTACGATTAATCCCGGGGCCACGAAATGGGACATCCGAGAGAAAGTTTGGGATTACATTGAAGCTAAGAATCTTGCAAACTTTCCAAGGCCTGTGCACAACAGAATCCCCAATTTTAAGGGTGCCCACACTGCCTGCGCCAAGGTGTCGGAGCTGCAGGTATTCAGTGAGACTGATGAGGTGAAGGTGGACCCTGACAAGCCGCTGGAGGGGGCGAGGCTGGCCGTGCTGCAGGCGAGGAAAACCCTGCTGGTGCCGACCCCTCGCCTTCGCACAGGACTCTTCAATAAGATTGTCCCGCCTGAGGGAGCAAGCAAAGAAGAACTGAGAGTGTGCTCCACCTCGCAGGGAGTGAAGGAGTTCAGCGTCCCTGTGGGTCTGGATTCCAACGTTCAGGTGGATCTTCTGGTGGTTGGCTCTGTGGCCGTGTCTGAGAAAGgTTACCGGATAGGTAAAGGAGAGGGCTTTGCTGACATGGAGTATGCCATGATGCTCTGCATGGGGGCTGTGACCGAATCCACTGTGGTGGTTACCATCGTCCATGACTGCCAGGTTGTTGACATCCCAGAGGATCTGATTGAGAGCCATGATATCACTGTGGACTACATCCTCACCCCGACCAGAGTCATCAAGACAGACTGCCAACGCCCCAAGCCCCAGGGCATCATCTGGACTAAGCTGAACGCTGAGATGCTGGAGAAGATCCCCGTGCTGAAGAAGCTCCGGGCCTTGGAGGAGGAGCAAGGGAAGGACGTGACCCTGGGGACCCACCCTCCCCCGCAGCCCAGGGAGAGGGCCAGGAGGGCGCCCCGGAGGGACAGAGAGCCCAGGTCAGAGGGTGATAGACCCCGGCGTGAGCCCAGGCGCAGGCCTAGACGGGACACCCAAGAGGACTCTGAGAGGGACCCCAACGGGGAGTCCAGAGAGGAGACTGAGCAGAAACCCAGACGACGCCCACCaagagtgaggagggaggggggtagagaggggggtagggatggtgatggggagggggagggaggccaggagggaggcagagaggggggtaGGAGGGTCAGGGGATTCCGCAATGGGGGCTTCCGTGAGGGGGGCAGAGATGGAAGTagggggagaggcagaggaggaggccGGGAGGGGGccagggggaggggaagagaggtggacAGGGATGGGGTCAGGCAAGAGGGCAGGGAGGAAGGTGGTGAGCCCCGTGAGCGCAGGCCCCCCCTAACTGTGACCACAGTGTACCTGGGGGGCATCCCTGCCGGGCTGCGTGTCAGCGAGCTGAAGACTGCTCTCCGGGAGAGGGAGGCAGCCCCCATCCGTCTCACGTGGCAGGGTGCTCAGCACCGGGCCTTCCTGGACTACTTAGACCCCCAGGCTGCAGACCAGGCCCTGGCCGCCCTGGAGGGGCTCTCCCTGAACGGCCATGACCTGCAGGCTGAGCTGGCCAAGAGCCAGAGGGGAGGCAGGAGGCCAGGTCCAAGCAACCGGAGGCCCAGACCAAATACAGGCCCCAAAAATACAGctagagaaagtagagagagtaCGAGTGAACCAGAGGCAGATTCCCCCAAGCAGGAGCTCAACCATAACGAGTAACTGTCTGCTTCTATGTCCATCTCTGTACAGAAGCCAAGCCAGCAGAAAGAAAAGGCTGTGGTTCATGAAAGGGAAGGATGATACCTTCACTGTACCAATGTGAAGTGTGAAAATATGTTTAATGCCTTAAGCAGAGTTTGGTTTGTCGTTATGGTTTTTAGTGTTGGTATTGATAACACGTAACCCCATTTACGTTTGAAATGTTCTTATACGGAAGTTTCATCCACACTGGCAGGCCTGTCTGTCAGTCACAAAGGAAGGAGAGGTTGGAGGTTTCCCTGTTAGTCTCTTTGTGCAGGGGCAATGTTTAATGCCCTACATGTAATGCCATCGGAATTCACAGGATATTTTGTGTACTAAATAAACCATACTTTGAGTTCATAGTTTTAA

Function

symbol description
mthfsd Predicted to enable RNA binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be active in cytoplasm. Orthologous to human MTHFSD (methenyltetrahydrofolate synthetase domain containing).

NR:

description
methenyltetrahydrofolate synthase domain-containing protein-like isoform X1

GO:

id name namespace
GO:0009396 folic acid-containing compound biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0030272 5-formyltetrahydrofolate cyclo-ligase activity molecular_function

KEGG:

id description
K24991 MTHFSD; methenyltetrahydrofolate synthase domain-containing protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607476.2 False 2169 mRNA 0.56 8 69724498 69732656
XM_021607474.2 True 2168 mRNA 0.56 8 69724499 69732656

Neighbor

gene id symbol gene type direction distance location
gas8 gas8 coding upstream 15764 69700287 ~ 69708734 (+)
trnav-cac-7 NA coding upstream 24361 69700065 ~ 69700137 (+)
LOC110526472 LOC106587380 coding upstream 70109 69642275 ~ 69654389 (+)
LOC110526473 LOC106587381 coding upstream 82379 69610562 ~ 69642119 (+)
LOC110526471 tbb3 coding upstream 119839 69599153 ~ 69604659 (+)
LOC118964926 NA coding downstream 6963 69739619 ~ 69756833 (+)
emc8 LOC106587369 coding downstream 293506 70026162 ~ 70028929 (+)
LOC110525047 psf2 coding downstream 304332 70036194 ~ 70039507 (+)
LOC110526484 LOC106587367 coding downstream 316494 70049150 ~ 70058063 (+)
LOC110526485 fam92b coding downstream 819107 70551763 ~ 70558098 (+)
G539258 NA non-coding upstream 4324 69719936 ~ 69720174 (+)
G539239 NA non-coding upstream 36698 69686948 ~ 69687800 (+)
G539213 NA non-coding upstream 64193 69658498 ~ 69660305 (+)
mvda erg19 non-coding upstream 173778 69541893 ~ 69550751 (+)
G539139 NA non-coding upstream 247159 69474348 ~ 69477339 (+)
G539265 NA non-coding downstream 12807 69745463 ~ 69745782 (+)
G539272 NA non-coding downstream 25230 69757886 ~ 69758091 (+)
G539278 NA non-coding downstream 29889 69762545 ~ 69762761 (+)
G539783 NA non-coding downstream 47528 69780184 ~ 69780410 (+)
G539787 NA non-coding downstream 52640 69785296 ~ 69785615 (+)
G539068 NA other upstream 356856 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 712536 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 721670 68996083 ~ 69002828 (+)
G538859 NA other upstream 817651 68906045 ~ 68906847 (+)
G538607 NA other upstream 912608 68811119 ~ 68811890 (+)
G539959 NA other downstream 283686 70015270 ~ 70019477 (+)
G540179 NA other downstream 749294 70481950 ~ 70484368 (+)
cmc2 cmc2 other downstream 882869 70615476 ~ 70621510 (+)

Expression


Co-expression Network