LOC118964926


Basic Information

Item Value
gene id LOC118964926
gene name NA
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 69739619 ~ 69756833 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XR_005052225.1
GGGCCCgcccagtcccctcccactcacacACATCTGCCTGgctttagtttgtctgggagcagtTTTTTTCCAACTCAGAATCAGAGAAGTGGGTCTTTCTTAACACtcaaaattacattttattgaacAGAAAattatcttaaaaaaaaaaaaagaatggcgTGAAACAGGACTTATTTTCAAATATAGGACATAGCCAACTAGAATGTCTGTTTTTCAGAATATAAATGGTAGCCTAATACAACAGAGGCCTATGCTTGAACTTTGCAACGTTGGGACATGTTGTCTTTATTTTCGCAACGACAATATTtcttcaaaacatttttttgaaaatgtatgttTTAGTAAGCTTGTATGCACAACCACCGTGATATATAAAACTGGTTTTCCACTTGTCAGATACAGCAGGCCAACCTCACCATAGCACATTTCACTGACTTTGACTTATTAAAGTatgaagtatatttaaaatgttGCTTAAAATACGCTTATTTTAAAGAAAATGTCTCTATTCAAGACCACGCTGCTGATTTCTTTAAAAGATAGACAGGAACATGGGCAGGATGTTTATACAGCAAAATGTAAACATTTTCCCTGGCCTTCTTTAAATAAAAAATCAAGCAAAAAGACTCTCTAGATCAGCTCATACTCAATCTGATGCATTATGTCCGTTTTAGACAGCTCCTTGTGTATATGGATAGGACTTTTCAACGTAAATGCAGAAAGGGATTCAATCATGAATAATTATTATGTTCACACAGTAGAACTGAGGGTAAGAGCGCCCTGAGCCTAGCCGAATACTGTGCACTGAAACTCGGATGAGGACTTCAGATCGACGCCCACCAAACTCTCTCCCCTCAGAATGGTGCTCGAATCAAGCCCTCTgtgatggatgagagagagaaggttttCCAGTGATGGCAACAGTTCCTATGACGACCAGACCTCCACCGGGGGATTGCGCCTGTCAGACAGTGCTAATGATAATTGAGAGgCTGGAGTGGGCAGGCGTGTGGGTTTGGCCACAGGAAGCCGTGAATTCCTTGAAGAACAGAGAGTGTCAGGGCCCAGAACGCAACTTGGGGGGGGGGCTTACTGTACCTTGTAACGTCTCATAATCCTCCTAGTTGACCCCTGACCCCGGCCTGTGTTTGTATCAGGTCATCAACGTGAGGAATTGTAATGAGTCACTCCAGCAGTGTGTTTACCTTCTGGAGTCACGCAAGGAAGGAAATAAGGCACGGTCTTCTAAAAGTGTCAAAGTGAGAGAGAATAGCAGCAGTATTAGAGCAGAGCCCTGATTCATCTCACTGTGACTGACCTCTTGAACCGTTACACTGGGTTTATTTAACCTATTCACTACTGTAGGGAGACTAGCTACAGATCAGCCAAAACAGGGAGTAAGTCTACAATACTGTATGAAAACACAAGGTATGAGATTAATAGTGTAATTCTGTAATTGAAGTCTGATTCGTACCCCAACTCATTGAGTGAAATGATCCGTGTACTGCAGTATGTGGATACAACTTATTTTTGCTATCACTGTGTAATATGTTGCTAATAGACCAAACATGTATTATTTTTGTCATAATTCTCTGTTGTGTGTTgcagtcatttttttattttttttgctatgCCCAATGAAATTTGGAGAGATTTAGTATTTTCCTTTGTCTCATGCAACAATCATAAATTATGTGTATGTGATTTTTCTGTTTAATAATAATTTATTGCAATATATTTCTGACTCCAAGATATAGATTATATATGGAAGATCCCTTGTAATACACTTTGAAGGAGAAATCTGCACTCCCAAATACATCGTTTTTAAAATCTTGAACTTACAATGAGCTCTTGAAACTGGAATGAGTATGGAACTGTGGCCAACGCCTGTGATTAAAATACAATGTCCTGGCCTACCATCACGCCTTCCACACCGTGGGCTTGTGTGATTGCACAATTGTTGTTTTTGAGCAAGTGCCCCTGTTAGTTTTACTCTGTAAATAAATATGTGCTCCGAGCTGACAA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_005052225.1 True 2028 mRNA 0.40 3 69739619 69756833

Neighbor

gene id symbol gene type direction distance location
LOC110526477 mthfsd coding upstream 6963 69724498 ~ 69732656 (+)
gas8 gas8 coding upstream 30885 69700287 ~ 69708734 (+)
trnav-cac-7 NA coding upstream 39482 69700065 ~ 69700137 (+)
LOC110526472 LOC106587380 coding upstream 85230 69642275 ~ 69654389 (+)
LOC110526473 LOC106587381 coding upstream 97500 69610562 ~ 69642119 (+)
emc8 LOC106587369 coding downstream 269329 70026162 ~ 70028929 (+)
LOC110525047 psf2 coding downstream 280155 70036194 ~ 70039507 (+)
LOC110526484 LOC106587367 coding downstream 292317 70049150 ~ 70058063 (+)
LOC110526485 fam92b coding downstream 794930 70551763 ~ 70558098 (+)
si:ch73-103b9.2 cssa26h16orf46 coding downstream 837914 70594747 ~ 70599188 (+)
G539258 NA non-coding upstream 19445 69719936 ~ 69720174 (+)
G539239 NA non-coding upstream 51819 69686948 ~ 69687800 (+)
G539213 NA non-coding upstream 79314 69658498 ~ 69660305 (+)
mvda erg19 non-coding upstream 188899 69541893 ~ 69550751 (+)
G539139 NA non-coding upstream 262280 69474348 ~ 69477339 (+)
G539272 NA non-coding downstream 1053 69757886 ~ 69758091 (+)
G539278 NA non-coding downstream 5712 69762545 ~ 69762761 (+)
G539783 NA non-coding downstream 23351 69780184 ~ 69780410 (+)
G539787 NA non-coding downstream 28463 69785296 ~ 69785615 (+)
G539806 NA non-coding downstream 46345 69803178 ~ 69803444 (+)
G539068 NA other upstream 371977 69361641 ~ 69367642 (+)
LOC110526955 LOC106587395 other upstream 727657 69007055 ~ 69018414 (+)
G538877 LOC106582599 other upstream 736791 68996083 ~ 69002828 (+)
G538859 NA other upstream 832772 68906045 ~ 68906847 (+)
G538607 NA other upstream 927729 68811119 ~ 68811890 (+)
G539959 NA other downstream 259509 70015270 ~ 70019477 (+)
G540179 NA other downstream 725117 70481950 ~ 70484368 (+)
cmc2 cmc2 other downstream 858692 70615476 ~ 70621510 (+)

Expression


Co-expression Network