LOC110526482 (LOC106587370)


Basic Information

Item Value
gene id LOC110526482
gene name LOC106587370
gene type coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048570.1
NCBI id CM023224.2
chromosome length 101096859
location 70015270 ~ 70024522 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>XM_021607489.1
CAAGTTTGCAGAGCTGGCTAATGGAACTTTGAACTGAAGGATCCTGTGTCGGAGGAAATCTCATCATATTCATCCCCTCCACAAACCCAGAATGCTGGCCACCAGAGCCCTTAGCCTTGTTGGCAAACGTGCCATTTCCACATCAATCTGTGTACGTGGGGGACATGGTGTTGCCAAGGTAGACGACTACGCTCTCCCAGCCTACTTTGACAGGCGGGAGAACCCCCTCCCAGACGTCCAGTTTGTGACAGAGCTGAGTGCAGTGCAGAAGTCCttaaaggagaaggagaagggctCCTGGGCCACACTCTCCAATGAGGAGAAGATTGCATTGTACCGTATTAGCTTCAAGCAGAGCTTCGCAGAGATGAACGAGGGCACAAAGGAGTGGAAATCGGTTATCGCAGGAATGTTCTTCTTTATTGGCATGACTGGACTGGTTGTCCTATGGCAGAGGAAGTTTGTGTACGGACCTGTCCCCCCCACCTTTGAGTCAGAATGGAAAGAGAAGGAGGTACAGAGGATGCTGGACATGAGGATCAACCCGGTGGAGGGCTTCTCAGCCAAATGGGACTATGAGAACAAGGAATGGAAGAAGTAAACCAACCATCCAGAGGACCACATTACATACCATGACACCTACAAACGTACCAATTACTTGTCTGTATTTATCTATTGTCCACATTACCTCAGTCAATACGTTTTGGAAGGTCTCTTCCTCTTAAGGTCATCATGTATTATAGAGCAAAATAAAAGTTCCTATGTTTACCCAATA
>XM_036980864.1
TTTCGATGACGTATCATGAtgtctgacgagtatacacttgcaggAATGCTGGCCACCAGAGCCCTTAGCCTTGTTGGCAAACGTGCCATTTCCACATCAATCTGTGTACGTGGGGGACATGGTGTTGCCAAGGTAGACGACTACGCTCTCCCAGCCTACTTTGACAGGCGGGAGAACCCCCTCCCAGACGTCCAGTTTGTGACAGAGCTGAGTGCAGTGCAGAAGTCCttaaaggagaaggagaagggctCCTGGGCCACACTCTCCAATGAGGAGAAGATTGCATTGTACCGTATTAGCTTCAAGCAGAGCTTCGCAGAGATGAACGAGGGCACAAAGGAGTGGAAATCGGTTATCGCAGGAATGTTCTTCTTTATTGGCATGACTGGACTGGTTGTCCTATGGCAGAGGAAGTTTGTGTACGGACCTGTCCCCCCCACCTTTGAGTCAGAATGGAAAGAGAAGGAGGTACAGAGGATGCTGGACATGAGGATCAACCCGGTGGAGGGCTTCTCAGCCAAATGGGACTATGAGAACAAGGAATGGAAGAAGTAAACCAACCATCCAGAGGACCACATTACATACCATGACACCTACAAACGTACCAATTACTTGTCTGTATTTATCTATTGTCCACATTACCTCAGTCAATACGTTTTGGAAGGTCTCTTCCTCTTAAGGTCATCATGTATTATAGAGCAAAATAAAAGTTCCTATGTTTACCCAATA
>XM_021607490.1
GAATTTTCTAAATTATTAGACGTCTGATATTCAGCTATCGTAgaacatattatatatattttaattaagACAAACATGCTACATGTCTGCTGTGTTATCAGAAATGGATTTGTCAATGTTTCCGAACGAGCCGAGTGAAGAGATTGACATTGACATTGAAAAGAGGCAGACAAGACAAGGGGCAAATATGCAATGGTTGGCTAGGCTAGCATCCTAGCTAACGCTAGTTAAGAATGCTGGCCACCAGAGCCCTTAGCCTTGTTGGCAAACGTGCCATTTCCACATCAATCTGTGTACGTGGGGGACATGGTGTTGCCAAGGTAGACGACTACGCTCTCCCAGCCTACTTTGACAGGCGGGAGAACCCCCTCCCAGACGTCCAGTTTGTGACAGAGCTGAGTGCAGTGCAGAAGTCCttaaaggagaaggagaagggctCCTGGGCCACACTCTCCAATGAGGAGAAGATTGCATTGTACCGTATTAGCTTCAAGCAGAGCTTCGCAGAGATGAACGAGGGCACAAAGGAGTGGAAATCGGTTATCGCAGGAATGTTCTTCTTTATTGGCATGACTGGACTGGTTGTCCTATGGCAGAGGAAGTTTGTGTACGGACCTGTCCCCCCCACCTTTGAGTCAGAATGGAAAGAGAAGGAGGTACAGAGGATGCTGGACATGAGGATCAACCCGGTGGAGGGCTTCTCAGCCAAATGGGACTATGAGAACAAGGAATGGAAGAAGTAAACCAACCATCCAGAGGACCACATTACATACCATGACACCTACAAACGTACCAATTACTTGTCTGTATTTATCTATTGTCCACATTACCTCAGTCAATACGTTTTGGAAGGTCTCTTCCTCTTAAGGTCATCATGTATTATAGAGCAAAATAAAAGTTCCTATGTTTACCCAATA
>XM_021607488.2
CCGAGCACAGGTTCCCTCACCAGCTACGTATTTCCGGTTAATCGCACTTCCTTTATGGTTTTTGGAGCGTCGGCGAAAGGAGAAAAAAATGCTGGCCACCAGAGCCCTTAGCCTTGTTGGCAAACGTGCCATTTCCACATCAATCTGTGTACGTGGGGGACATGGTGTTGCCAAGGTAGACGACTACGCTCTCCCAGCCTACTTTGACAGGCGGGAGAACCCCCTCCCAGACGTCCAGTTTGTGACAGAGCTGAGTGCAGTGCAGAAGTCCttaaaggagaaggagaagggctCCTGGGCCACACTCTCCAATGAGGAGAAGATTGCATTGTACCGTATTAGCTTCAAGCAGAGCTTCGCAGAGATGAACGAGGGCACAAAGGAGTGGAAATCGGTTATCGCAGGAATGTTCTTCTTTATTGGCATGACTGGACTGGTTGTCCTATGGCAGAGGAAGTTTGTGTACGGACCTGTCCCCCCCACCTTTGAGTCAGAATGGAAAGAGAAGGAGGTACAGAGGATGCTGGACATGAGGATCAACCCGGTGGAGGGCTTCTCAGCCAAATGGGACTATGAGAACAAGGAATGGAAGAAGTAAACCAACCATCCAGAGGACCACATTACATACCATGACACCTACAAACGTACCAATTACTTGTCTGTATTTATCTATTGTCCACATTACCTCAGTCAATACGTTTTGGAAGGTCTCTTCCTCTTAAGGTCATCATGTATTATAGAGCAAAATAAAAGTTCCTATGTTTACCCAATA

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description
K02263 COX4; cytochrome c oxidase subunit 4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_021607489.1 False 775 mRNA 0.48 5 70015270 70020558
XM_036980864.1 False 729 mRNA 0.48 5 70015270 70023633
XM_021607490.1 False 917 mRNA 0.45 5 70015270 70024419
XM_021607488.2 True 772 mRNA 0.48 5 70015270 70024522

Neighbor

gene id symbol gene type direction distance location
dusp22a ds22a coding downstream 338 69975945 ~ 70014932 (-)
irf8 NA coding downstream 49246 69958081 ~ 69966024 (-)
LOC110526478 foxf1 coding downstream 275737 69735574 ~ 69739533 (-)
LOC110526474 LOC106562278 coding downstream 319791 69658483 ~ 69695479 (-)
LOC110526465 LOC106587363 coding downstream 550787 69367059 ~ 69464483 (-)
gse1 LOC106587451 coding upstream 38025 70062547 ~ 70519005 (-)
LOC118964927 NA coding upstream 474024 70498546 ~ 70503416 (-)
LOC118964928 NA coding upstream 502574 70527096 ~ 70556412 (-)
LOC110526959 LOC106587454 coding upstream 568036 70592558 ~ 70593481 (-)
LOC110526960 atmin coding upstream 575479 70600001 ~ 70613388 (-)
G540326 NA non-coding downstream 30458 69984471 ~ 69984812 (-)
G540325 NA non-coding downstream 32287 69982562 ~ 69982983 (-)
G539887 NA non-coding downstream 93743 69921297 ~ 69921527 (-)
G539874 NA non-coding downstream 130550 69884402 ~ 69884720 (-)
G539872 NA non-coding downstream 135414 69879516 ~ 69879856 (-)
G540353 NA non-coding upstream 17851 70042373 ~ 70042841 (-)
G540355 NA non-coding upstream 20033 70044555 ~ 70044781 (-)
G540357 NA non-coding upstream 26388 70050910 ~ 70051143 (-)
G540323 NA non-coding upstream 31867 70056389 ~ 70057154 (-)
G540358 NA non-coding upstream 35445 70059967 ~ 70061150 (-)
G539714 NA other downstream 325255 69688907 ~ 69690015 (-)
G539674 LOC106587381 other downstream 398951 69615754 ~ 69616671 (-)
LOC110526462 NA other downstream 725774 69272988 ~ 69289496 (-)
G539306 NA other downstream 1009605 69002743 ~ 69005665 (-)
LOC110526455 LOC106587401 other downstream 1061606 68949510 ~ 68953699 (-)
G540376 NA other upstream 79276 70103798 ~ 70107175 (-)
LOC110526488 LOC106562298 other upstream 626442 70623828 ~ 70666213 (-)
G541798 NA other upstream 1585009 71609531 ~ 71613840 (-)
G543091 NA other upstream 2575753 72600275 ~ 72721818 (-)
G543092 NA other upstream 2634934 72659456 ~ 72666713 (-)

Expression


Co-expression Network